Ss1.1-Lng1-LNG010042C10.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTCAACAGTAGTTTAATTAAATAAGTTGGGGGTGGGTTCATCAGAAGGCCATCATGGGA CCCCTGGGGAACCAGCAGTCTTGGCAATATGGGGTTGGAGAAGGGAGAACCCTTTCCTTC CAAGGCAAGGCACAGGCTATTTGGCAAGGAGAGATGAGGTGAGGAGTGGAACCCCGCTCA GGGAGCCGGCTGAAGTGCATGCAATATTGGGACCGTTCAGGCAACTTGAGTTACGAAGCT GGGCATCGCGCAGGTCAGGGGTTCAGGCTGTTCGCAAAGGCTTGTGGTTCACCTGGGAGA TGCTGACGCCAGTGAGTCTCTCCACGCTCTCTGGCAGGCGGCTCAGGATGTCCAGCACTT CCCCGGTCACTTTGGCCGCCCCCATGGTCCCGCTTCCACTGGACACCAGTGTAATCTTCT TGGCCGAGGTCAAGGGACCACTGATCTCCTCTGCCACCTGGGGCAGCTTCTCTAGCAGCA TGTCCAGCTGAGCAGCCTCCTGGTACAGCTGGAAAGCCTCTGCCTTCTTGGCCATCTGCT CAGCCTCCGCCCGGGCTCGGGCCCCAATGGCAAAGGCCTCGGCCTCCCCACGCATCCGCA CTGACTCGGCTTCTGCCTCTGCCTGCATGATCAGCTGGGACTTCTCCGCCGCCGCGAGGC GCTCCAGCTTGTAGCGCTCGGCTTCCGCCGGCTTCCGCACGCGGGCCTCCAGCTCCTTCT CGCGGCGGGCGATCTCCTGCTCCTGCACCGCCACCTGCTGGGCCCGCTCCACCACCTGCA CCTGCACCCGCTGCTCCTCGATCTGCTGCTTCGTCTTCGCCACCTGAAGCTGATAGGCCA GGTCAGCCTGTGCTCGCCGGGTGTTGACCTCGATGTCATAGGCAGCCTTCTTCAGCTCGT AGTCCCTCTGCGCCTTGGCCATCTCGATCTCACTCAGGTATTGAGCAGACACCTTTTCCT GCTTGGCTTTGGCCTCCCGGATCCCAGCATCTCTCTTGGCCTCTGCTTCCCCAATCCGAG CATCTTTTTGGACTTGAGCTGTTCGGGCCTTCCCCAAGGAGTGCAAATAGTCCTGATCAT CGTGAATGTCCTTCAGGGTGTAGCTGACCACGCTGATGCCCATGTTGACCAGGTCTGAGG AGGCCACTTTGAAAACTTGCTCAGAGAATTTCTGCCTGTCCTTATAGATTTCCTCCACAG TCATGTGGGCCATGATAGCCCTCTGGTGGCCCTCCAGCGTCTCCAGTGCGATGTGGGCAA TCTCAGCCTCCGTCTTCCCCAGGAACATCTGGCAGGCAGCCGCCAACATCTCCTTGTTCT GGCCCTGGATTTTCACCTGGGCAATGCCAGTGACTGAGATGGGGACCCCATGGCGAGTGT AAACCTTTTCACTCTTGACATTGAGAGTCAATGTGTTGAGAGAGATCCTCTGGATTTGCT GGATGCAGGGCAGGACAAAGACACGACCTCCAGCCACCATGACTGGGGGGCTCCGGCAGA AACCAGAGACCACCATGGCCTCGTTTGGGCCACAGGTGAAAAACATGGCTCAAGGTGGAG CTTCCTGGACGCAGGCGGCGGCCGGGCAGGGGTCCCTGGCAGGGCGGGGGCGCGCAAGGG ACCCGTGCGCGAAGCAGGGGAAGCTCGCGCAAGGCCTTTCAAGAAGCGGGGCCTGGCTTG GCGCCCGCGCCCCCTACCCGGCCACACCCTGTTGCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTCAACAGTAGTTTAATTAAATAAGTTGGGGGTGGGTTCATCAGAAGGCCATCATGGGA CCCCTGGGGAACCAGCAGTCTTGGCAATATGGGGTTGGAGAAGGGAGAACCCTTTCCTTC CAAGGCAAGGCACAGGCTATTTGGCAAGGAGAGATGAGGTGAGGAGTGGAACCCCGCTCA GGGAGCCGGCTGAAGTGCATGCAATATTGGGACCGTTCAGGCAACTTGAGTTACGAAGCT GGGCATCGCGCAGGTCAGGGGTTCAGGCTGTTCGCAAAGGCTTGTGGTTCACCTGGGAGA TGCTGACGCCAGTGAGTCTCTCCACGCTCTCTGGCAGGCGGCTCAGGATGTCCAGCACTT CCCCGGTCACTTTGGCCGCCCCCATGGTCCCGCTTCCACTGGACACCAGTGTAATCTTCT TGGCCGAGGTCAAGGGACCACTGATCTCCTCTGCCACCTGGGGCAGCTTCTCTAGCAGCA TGTCCAGCTGAGCAGCCTCCTGGTACAGCTGGAAAGCCTCTGCCTTCTTGGCCATCTGCT CAGCCTCCGCCCGGGCTCGGGCCCCAATGGCAAAGGCCTCGGCCTCCCCACGCATCCGCA CTGACTCGGCTTCTGCCTCTGCCTGCATGATCAGCTGGGACTTCTCCGCCGCCGCGAGGC GCTCCAGCTTGTAGCGCTCGGCTTCCGCCGGCTTCCGCACGCGGGCCTCCAGCTCCTTCT CGCGGCGGGCGATCTCCTGCTCCTGCACCGCCACCTGCTGGGCCCGCTCCACCACCTGCA CCTGCACCCGCTGCTCCTCGATCTGCTGCTTCGTCTTCGCCACCTGAAGCTGATAGGCCA GGTCAGCCTGTGCTCGCCGGGTGTTGACCTCGATGTCATAGGCAGCCTTCTTCAGCTCGT AGTCCCTCTGCGCCTTGGCCATCTCGATCTCACTCAGGTATTGAGCAGACACCTTTTCCT GCTTGGCTTTGGCCTCCCGGATCCCAGCATCTCTCTTGGCCTCTGCTTCCCCAATCCGAG CATCTTTTTGGACTTGAGCTGTTCGGGCCTTCCCCAAGGAGTGCAAATAGTCCTGATCAT CGTGAATGTCCTTCAGGGTGTAGCTGACCACGCTGATGCCCATGTTGACCAGGTCTGAGG AGGCCACTTTGAAAACTTGCTCAGAGAATTTCTGCCTGTCCTTATAGATTTCCTCCACAG TCATGTGGGCCATGATAGCCCTCTGGTGGCCCTCCAGCGTCTCCAGTGCGATGTGGGCAA TCTCAGCCTCCGTCTTCCCCAGGAACATCTGGCAGGCAGCCGCCAACATCTCCTTGTTCT GGCCCTGGATTTTCACCTGGGCAATGCCAGTGACTGAGATGGGGACCCCATGGCGAGTGT AAACCTTTTCACTCTTGACATTGAGAGTCAATGTGTTGAGAGAGATCCTCTGGATTTGCT GGATGCAGGGCAGGACAAAGACACGACCTCCAGCCACCATGACTGGGGGGCTCCGGCAGA AACCAGAGACCACCATGGCCTCGTTTGGGCCACAGGTGAAAAACATGGCTCAAGGTGGAG CTTCCTGGACGCAGGCGGCGGCCGGGCAGGGGTCCCTGGCAGGGCGGGGGCGCGCAAGGG ACCCGTGCGCGAAGCAGGGGAAGCTCGCGCAAGGCCTTTCAAGAAGCGGGGCCTGGCTTG GCGCCCGCGCCCCCTACCCGGCCACACCCTGTTGCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 289-1339, + strand, RNAz p=0.869116 | |
| 289-1339, - strand, RNAz p=0.869116 | |
| 289-408, + strand, RNAz p=0.788627 | |
| 289-408, - strand, RNAz p=0.788627 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 289-1339, + strand, RNAz p=0.869116 | |
| 289-1339, - strand, RNAz p=0.869116 | |
| 289-408, + strand, RNAz p=0.788627 | |
| 289-408, - strand, RNAz p=0.788627 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of AF117234, - |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 289-461, gnl|bosTau2|chr23 (20797919-20797747) | |
| 289-461, gnl|canFam2|chr12 (3521122-3521293) | |
| 289-461, gnl|danRer3|chrUn (116227428-116227598) | |
| 289-461, gnl|echTel1|scaffold_236312 (15391-15220) | |
| 289-461, gnl|fr1|chrUn (116187136-116187276) | |
| 289-461, gnl|hg17|chr6 (30805775-30805946) | |
| 289-461, gnl|Hg17|chr6 (30805774-30805946) | |
| 289-461, gnl|loxAfr1|scaffold_134097 (3974-4145) | |
| 289-461, gnl|mm7|chr17 (33932777-33932606) | |
| 289-461, gnl|Mm7|chr17 (33932776-33932604) | |
| 289-461, gnl|monDom2|scaffold_42 (18602219-18602048) | |
| 289-461, gnl|oryCun1|scaffold_146764 (11181-11010) | |
| 289-461, gnl|panTro1|chr5 (31267208-31267379) | |
| 289-461, gnl|rheMac2|chr4 (30314609-30314780) | |
| 289-461, gnl|rn3|chr20 (3067958-3068129) | |
| 289-461, gnl|tetNig1|chrUn_random (10671518-10671692) | |
| 289-461, gnl|xenTro1|scaffold_547 (582086-582255) | |
| 640-826, gnl|bosTau2|chr23 (20797060-20796874) | |
| 640-826, gnl|Hg17|chr6 (30806673-30806859) | |
| 640-826, gnl|Mm7|chr17 (33931690-33931504) | |
| 1168-1339, gnl|bosTau2|chr23 (20790990-20790820) | |
| 1168-1339, gnl|Hg17|chr6 (30816922-30817092) | |
| 1168-1339, gnl|Mm7|chr17 (33926397-33926226) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 289-461, gnl|bosTau2|chr23 (20797919-20797747) | |
| 289-461, gnl|canFam2|chr12 (3521122-3521293) | |
| 289-461, gnl|danRer3|chrUn (116227428-116227598) | |
| 289-461, gnl|echTel1|scaffold_236312 (15391-15220) | |
| 289-461, gnl|fr1|chrUn (116187136-116187276) | |
| 289-461, gnl|hg17|chr6 (30805775-30805946) | |
| 289-461, gnl|Hg17|chr6 (30805774-30805946) | |
| 289-461, gnl|loxAfr1|scaffold_134097 (3974-4145) | |
| 289-461, gnl|mm7|chr17 (33932777-33932606) | |
| 289-461, gnl|Mm7|chr17 (33932776-33932604) | |
| 289-461, gnl|monDom2|scaffold_42 (18602219-18602048) | |
| 289-461, gnl|oryCun1|scaffold_146764 (11181-11010) | |
| 289-461, gnl|panTro1|chr5 (31267208-31267379) | |
| 289-461, gnl|rheMac2|chr4 (30314609-30314780) | |
| 289-461, gnl|rn3|chr20 (3067958-3068129) | |
| 289-461, gnl|tetNig1|chrUn_random (10671518-10671692) | |
| 289-461, gnl|xenTro1|scaffold_547 (582086-582255) | |
| 640-826, gnl|bosTau2|chr23 (20797060-20796874) | |
| 640-826, gnl|Hg17|chr6 (30806673-30806859) | |
| 640-826, gnl|Mm7|chr17 (33931690-33931504) | |
| 1168-1339, gnl|bosTau2|chr23 (20790990-20790820) | |
| 1168-1339, gnl|Hg17|chr6 (30816922-30817092) | |
| 1168-1339, gnl|Mm7|chr17 (33926397-33926226) |
| Expressed library(ies): 23 entry(ies) | More info |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
| cov (0.528611) | |
| cbl (0.344392) | |
| cty (0.31224) | |
| nca (0.273748) | |
| mas (0.210305) | |
| fcc (0.197785) | |
| col (0.195008) | |
| nlu (0.191681) | |
| ton (0.1755) | |
| eye (0.170503) | |
| nco (0.161734) | |
| csp (0.161186) | |
| eli (0.151814) | |
| cag (0.151194) | |
| lun (0.150489) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| che (0.136314) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| eru (0.120048) | |
| jej (0.0989218) |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.528611) | |
| cbl (0.344392) | |
| cty (0.31224) | |
| nca (0.273748) | |
| mas (0.210305) | |
| fcc (0.197785) | |
| col (0.195008) | |
| nlu (0.191681) | |
| ton (0.1755) | |
| eye (0.170503) | |
| nco (0.161734) | |
| csp (0.161186) | |
| eli (0.151814) | |
| cag (0.151194) | |
| lun (0.150489) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| che (0.136314) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| eru (0.120048) | |
| jej (0.0989218) |