Non-Coding RNA Search

Ss1.1-Lng1-LNG010042D05.5

Sequence:


               
               AACAGTGAGGGCACTGCAGAGCATGTGCGCCACGGCTGCCACCACCTCAGGTGATAAGGA
CTGTCCAGCCCACTTCTCAGCGGCTGCTGACCGCATCCTCAGTGGCTTCCAGGAAGACTT
TCTGTGGCCCATGCTGGTAGCTGAGTTCCTGGTGGCCCTTGCTGGCAACAGTCTGGCCTT
GTACCGCTTCTGCACACGGGAGCAGCGCCCATGGCACCCAGCCGTGATCTTCTCCGCCCA
ACTGGCCATCAGCGACCTGCTCTATGCCCTGACACTACCCCCGCTGGCTGCCTACTTCTA
CCCACCCAAACACTGGCGCTATGGGGAGGTCACCTGCCGCCTGGAGCGCTTCCTCTTCAC
CTGCAACCTGCTGGGTAGCGTCATCTTCATCACCTGCATCAGCCTCAACCGCTATCTGGG
CATTGTCCATCCCTTCTTCACCCACAGCCAACTGCAGCCCAAGCACGCCTGGGCCATCAG
CACTGCTGGCTGGGTGCTGGCAGCCCTGCTGGCTGCACCCACACTCAGCTTCTCCCACTT
GAAGAGGCCGAAGCAGGAAGGCAGGTGCACTGTGGCCACACCGGAGGCCTGCATCAAGTG
CCTAGGAACGGCAGATGACAACCAGCTTGAGGCCTACAGAGTCTATGGCCTGGTGCTGCT
GGCCCTGGGCTGTGGCCTGCCGCTGCTGCTCAACCTGGCAGCCTATGGCGCCCTGGGGCA
GGCCGTGCGGCGTAGCCACGGCATGACAGCGGCCAACAAGCTGCACGTGATAGTGCTGGT
AGCCAGTGGTGTGGCCCTCTATGCTAGTTTCCTATGTGCCCTACTATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACAGTGAGGGCACTGCAGAGCATGTGCGCCACGGCTGCCACCACCTCAGGTGATAAGGA
CTGTCCAGCCCACTTCTCAGCGGCTGCTGACCGCATCCTCAGTGGCTTCCAGGAAGACTT
TCTGTGGCCCATGCTGGTAGCTGAGTTCCTGGTGGCCCTTGCTGGCAACAGTCTGGCCTT
GTACCGCTTCTGCACACGGGAGCAGCGCCCATGGCACCCAGCCGTGATCTTCTCCGCCCA
ACTGGCCATCAGCGACCTGCTCTATGCCCTGACACTACCCCCGCTGGCTGCCTACTTCTA
CCCACCCAAACACTGGCGCTATGGGGAGGTCACCTGCCGCCTGGAGCGCTTCCTCTTCAC
CTGCAACCTGCTGGGTAGCGTCATCTTCATCACCTGCATCAGCCTCAACCGCTATCTGGG
CATTGTCCATCCCTTCTTCACCCACAGCCAACTGCAGCCCAAGCACGCCTGGGCCATCAG
CACTGCTGGCTGGGTGCTGGCAGCCCTGCTGGCTGCACCCACACTCAGCTTCTCCCACTT
GAAGAGGCCGAAGCAGGAAGGCAGGTGCACTGTGGCCACACCGGAGGCCTGCATCAAGTG
CCTAGGAACGGCAGATGACAACCAGCTTGAGGCCTACAGAGTCTATGGCCTGGTGCTGCT
GGCCCTGGGCTGTGGCCTGCCGCTGCTGCTCAACCTGGCAGCCTATGGCGCCCTGGGGCA
GGCCGTGCGGCGTAGCCACGGCATGACAGCGGCCAACAAGCTGCACGTGATAGTGCTGGT
AGCCAGTGGTGTGGCCCTCTATGCTAGTTTCCTATGTGCCCTACTATG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61833009|ref|XP_591502.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61833009|ref|XP_591502.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               167-286, - strand, RNAz p=0.608815
               

               
               447-763, + strand, RNAz p=0.707459

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               167-286, - strand, RNAz p=0.608815
               

               
               447-763, + strand, RNAz p=0.707459

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               48-827, gnl|bosTau2|chr7 (9675030-9674252)
               

               
               48-827, gnl|Hg17|chr19 (10085306-10086084)
               


               
               242-432, gnl|bosTau2|chr15 (33379277-33379087)
               

               
               242-432, gnl|Hg17|chr11 (72685413-72685603)
               

               
               242-432, gnl|Mm7|chr7 (96985195-96985005)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               48-827, gnl|bosTau2|chr7 (9675030-9674252)
               

               
               48-827, gnl|Hg17|chr19 (10085306-10086084)
               


               
               242-432, gnl|bosTau2|chr15 (33379277-33379087)
               

               
               242-432, gnl|Hg17|chr11 (72685413-72685603)
               

               
               242-432, gnl|Mm7|chr7 (96985195-96985005)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               clu (0.119646)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)

	167-286, - strand, RNAz p=0.608815
	447-763, + strand, RNAz p=0.707459

	48-827, gnl\|bosTau2\|chr7 (9675030-9674252)
	48-827, gnl\|Hg17\|chr19 (10085306-10086084)

	242-432, gnl\|bosTau2\|chr15 (33379277-33379087)
	242-432, gnl\|Hg17\|chr11 (72685413-72685603)
	242-432, gnl\|Mm7\|chr7 (96985195-96985005)