Ss1.1-Lng1-LNG010043D03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGAGCCGGGCCTGGAGGATCCCAAAGAGTCGCTGCCGCTCTGGCCGCCGGCGTTTGCGG GTCGCGGGGAGCAGGGCCTGGCGGGCGGGGTGTGTCGCGATGCCGGAGCTGGCTGTGCAG AAGGTGGTGGTCCACCCCCTGGTGCTGCTGAGTGTGGTGGATCATTTCAATCGAATAGGC AAGGTTGGAAACCAGAAGCGTGTTGTTGGTGTGCTTTTGGGGTCATGGCAAAAGAAAGTA CTTGATGTATCCAACAGTTTTGCAGTCCCTTTTGATGAAGATGACAAAGATGATTCTGTC TGGTTTCTAGACCATGATTATTTGGAAAACATGTATGGCATGTTTAAGAAGGTCAATGCC AGAGAAAGAATAGTCGGGTGGTACCACACAGGCCCTAAACTGCACAAGAATGACATCGCC ATCAACGAGCTCATGAAGAGATACTGCCCTAACTCGGTATTAGTCATCATTGACGTGAAG CCGAAAGACCTGGGCCTGCCTACGGAAGCATATATTTCGGTGGAAGAAGTTCACGATGAT GGAACTCCAACCTCGAAAACATTTGAGCATGTGACGAGTGAAATCGGAGCAGAGGAAGCT GAGGAAGTTGGAGTGGAACACTTGTTACGAGACATCAAAGACACTACAGTGGGCACGCTT TCCCAGCGGATCACAAACCAAGTCCACGGTTTGAAGGGACTCAACTCCAAGCTTCTGGAT ATCAGGAGCTACCTGGAGAAAGTGGCCACCGGCAAGCTGCCCATCAACCACCAGATCATC TACCAGCTGCAGGACGTCTTCAACCTGCTGCCAGATGTCAGCCTGCAGGAGTTTGTCAAG GCCTTTTACCTGAAGACCAACGACCAGATGGTGGTGGTGTATTTGGCCTCACTGATCCGC TCCGTCGTCGCCTTGCACAACCTCATCAACAACAAGATCGCCAACCGGGACGCAGAGAAG AAAGAGGGGCAGGAAAAAGAAGACAGCAAAAAGGATAGAAAAGATGACAAAGAGAAGGAG AAAGACAAGGAAAAGAGTGATGTAAAGAAAGAAGAGAAAAAGGAGAAAAAATAAAACATG TAGCTTTTTAATTTGTAAATTAAAATCTTATAAACTAACTCAGTGTGCCACCAGAGGGTT CTTTTCACTTTAAGCGCTTGTTCCAAAGCTGTGTTGATGAGCGCTCTCTGGATAGAGGGA CTGATCGCACACCTAAGCTGCAGCCCCGGCTGCTGTGATTGGGGATGTGATAGCTCAGGC TGCAGCCTGTGTGAGAAAGAGTGAAGAGAAGTACACCTAACACTGCTGGTACTCTTCATG CTTTTATCTATAAAACCAGGAGTTGACTCTCCCCAGTCAAAAAAGACTCTTGGGGTCTGT TTCTGGCAGTCTGCAAAACTGCAAAATGGAATGCATGAATTCCATAAGTACTCTGCCTCG GAAAACCTTGAGTTCTGACCCCCTGAACTCTGTTGCGAATACCACCCCACAGGACTTCTC GGACCCGTAGCTCTGGCATTCTCGGGGCTTGGGATCCAGCTCAATATATTGTTTACCTTC AAAGACACAATTAAATGGCTTGGTTTTTAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGAGCCGGGCCTGGAGGATCCCAAAGAGTCGCTGCCGCTCTGGCCGCCGGCGTTTGCGG GTCGCGGGGAGCAGGGCCTGGCGGGCGGGGTGTGTCGCGATGCCGGAGCTGGCTGTGCAG AAGGTGGTGGTCCACCCCCTGGTGCTGCTGAGTGTGGTGGATCATTTCAATCGAATAGGC AAGGTTGGAAACCAGAAGCGTGTTGTTGGTGTGCTTTTGGGGTCATGGCAAAAGAAAGTA CTTGATGTATCCAACAGTTTTGCAGTCCCTTTTGATGAAGATGACAAAGATGATTCTGTC TGGTTTCTAGACCATGATTATTTGGAAAACATGTATGGCATGTTTAAGAAGGTCAATGCC AGAGAAAGAATAGTCGGGTGGTACCACACAGGCCCTAAACTGCACAAGAATGACATCGCC ATCAACGAGCTCATGAAGAGATACTGCCCTAACTCGGTATTAGTCATCATTGACGTGAAG CCGAAAGACCTGGGCCTGCCTACGGAAGCATATATTTCGGTGGAAGAAGTTCACGATGAT GGAACTCCAACCTCGAAAACATTTGAGCATGTGACGAGTGAAATCGGAGCAGAGGAAGCT GAGGAAGTTGGAGTGGAACACTTGTTACGAGACATCAAAGACACTACAGTGGGCACGCTT TCCCAGCGGATCACAAACCAAGTCCACGGTTTGAAGGGACTCAACTCCAAGCTTCTGGAT ATCAGGAGCTACCTGGAGAAAGTGGCCACCGGCAAGCTGCCCATCAACCACCAGATCATC TACCAGCTGCAGGACGTCTTCAACCTGCTGCCAGATGTCAGCCTGCAGGAGTTTGTCAAG GCCTTTTACCTGAAGACCAACGACCAGATGGTGGTGGTGTATTTGGCCTCACTGATCCGC TCCGTCGTCGCCTTGCACAACCTCATCAACAACAAGATCGCCAACCGGGACGCAGAGAAG AAAGAGGGGCAGGAAAAAGAAGACAGCAAAAAGGATAGAAAAGATGACAAAGAGAAGGAG AAAGACAAGGAAAAGAGTGATGTAAAGAAAGAAGAGAAAAAGGAGAAAAAATAAAACATG TAGCTTTTTAATTTGTAAATTAAAATCTTATAAACTAACTCAGTGTGCCACCAGAGGGTT CTTTTCACTTTAAGCGCTTGTTCCAAAGCTGTGTTGATGAGCGCTCTCTGGATAGAGGGA CTGATCGCACACCTAAGCTGCAGCCCCGGCTGCTGTGATTGGGGATGTGATAGCTCAGGC TGCAGCCTGTGTGAGAAAGAGTGAAGAGAAGTACACCTAACACTGCTGGTACTCTTCATG CTTTTATCTATAAAACCAGGAGTTGACTCTCCCCAGTCAAAAAAGACTCTTGGGGTCTGT TTCTGGCAGTCTGCAAAACTGCAAAATGGAATGCATGAATTCCATAAGTACTCTGCCTCG GAAAACCTTGAGTTCTGACCCCCTGAACTCTGTTGCGAATACCACCCCACAGGACTTCTC GGACCCGTAGCTCTGGCATTCTCGGGGCTTGGGATCCAGCTCAATATATTGTTTACCTTC AAAGACACAATTAAATGGCTTGGTTTTTAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 629-827, - strand, RNAz p=0.991185 | |
| 1193-1296, - strand, RNAz p=0.699807 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 629-827, - strand, RNAz p=0.991185 | |
| 1193-1296, - strand, RNAz p=0.699807 |
| Aligned organism(s): 54 entry(ies) | More info |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
| 1-173, gnl|bosTau2|chr18 (30564627-30564455) | |
| 1-173, gnl|Hg17|chr16 (72888221-72888387) | |
| 1-173, gnl|Mm7|chr8 (106188588-106188422) | |
| 353-459, gnl|bosTau2|chr18 (30560839-30560733) | |
| 353-459, gnl|canFam2|chr5 (82796035-82796126) | |
| 353-459, gnl|canFam2|chr5 (82796028-82796125) | |
| 353-459, gnl|canFam2|chr5 (82796012-82796145) | |
| 353-459, gnl|dasNov1|scaffold_5094 (24258-24167) | |
| 353-459, gnl|dasNov1|scaffold_5094 (24265-24168) | |
| 353-459, gnl|dasNov1|scaffold_5094 (24282-24152) | |
| 353-459, gnl|echTel1|scaffold_315991 (64856-64765) | |
| 353-459, gnl|echTel1|scaffold_315991 (64863-64766) | |
| 353-459, gnl|echTel1|scaffold_315991 (64884-64750) | |
| 353-459, gnl|fr1|chrUn (73710708-73710614) | |
| 353-459, gnl|fr1|chrUn (73710715-73710618) | |
| 353-459, gnl|fr1|chrUn (73710733-73710611) | |
| 353-459, gnl|galGal2|chr11_random (259213-259119) | |
| 353-459, gnl|galGal2|chr11_random (259220-259123) | |
| 353-459, gnl|galGal2|chr11_random (259235-259107) | |
| 353-459, gnl|hg17|chr1 (51550219-51550313) | |
| 353-459, gnl|hg17|chr16 (72892936-72893071) | |
| 353-459, gnl|Hg17|chr16 (72892948-72893054) | |
| 353-459, gnl|hg17|chr17 (61624531-61624628) | |
| 353-459, gnl|loxAfr1|scaffold_1882 (104222-104131) | |
| 353-459, gnl|loxAfr1|scaffold_1882 (104229-104132) | |
| 353-459, gnl|loxAfr1|scaffold_1882 (104247-104116) | |
| 353-459, gnl|mm7|chr8 (106185096-106185007) | |
| 353-459, gnl|mm7|chr8 (106185104-106185008) | |
| 353-459, gnl|mm7|chr8 (106185122-106184991) | |
| 353-459, gnl|Mm7|chr8 (106185109-106185003) | |
| 353-459, gnl|monDom2|scaffold_23 (4210414-4210505) | |
| 353-459, gnl|monDom2|scaffold_23 (4210407-4210504) | |
| 353-459, gnl|monDom2|scaffold_23 (4210390-4210523) | |
| 353-459, gnl|oryCun1|scaffold_175916 (10315-10227) | |
| 353-459, gnl|oryCun1|scaffold_175916 (10323-10227) | |
| 353-459, gnl|oryCun1|scaffold_175916 (10341-10205) | |
| 353-459, gnl|panTro1|chr1 (49761537-49761631) | |
| 353-459, gnl|panTro1|chr18 (67278695-67278830) | |
| 353-459, gnl|panTro1|chr19_random (50426576-50426479) | |
| 353-459, gnl|rheMac2|chr1 (54198501-54198595) | |
| 353-459, gnl|rheMac2|chr16 (61585070-61585167) | |
| 353-459, gnl|rheMac2|chr20 (68354788-68354653) | |
| 353-459, gnl|rn3|chr19 (37461050-37460961) | |
| 353-459, gnl|rn3|chr19 (37461058-37460962) | |
| 353-459, gnl|rn3|chr19 (37461076-37460944) | |
| 353-459, gnl|tetNig1|chr13 (4322843-4322749) | |
| 353-459, gnl|tetNig1|chr13 (4322850-4322753) | |
| 353-459, gnl|tetNig1|chr13 (4322868-4322746) | |
| 353-459, gnl|xenTro1|scaffold_578 (511542-511448) | |
| 353-459, gnl|xenTro1|scaffold_578 (511549-511452) | |
| 353-459, gnl|xenTro1|scaffold_578 (511557-511432) | |
| 629-1590, gnl|bosTau2|chr18 (30557264-30556326) | |
| 629-1590, gnl|Hg17|chr16 (72896687-72897687) | |
| 629-1590, gnl|Mm7|chr8 (106181463-106180522) |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-173, gnl|bosTau2|chr18 (30564627-30564455) | |
| 1-173, gnl|Hg17|chr16 (72888221-72888387) | |
| 1-173, gnl|Mm7|chr8 (106188588-106188422) | |
| 353-459, gnl|bosTau2|chr18 (30560839-30560733) | |
| 353-459, gnl|canFam2|chr5 (82796035-82796126) | |
| 353-459, gnl|canFam2|chr5 (82796028-82796125) | |
| 353-459, gnl|canFam2|chr5 (82796012-82796145) | |
| 353-459, gnl|dasNov1|scaffold_5094 (24258-24167) | |
| 353-459, gnl|dasNov1|scaffold_5094 (24265-24168) | |
| 353-459, gnl|dasNov1|scaffold_5094 (24282-24152) | |
| 353-459, gnl|echTel1|scaffold_315991 (64856-64765) | |
| 353-459, gnl|echTel1|scaffold_315991 (64863-64766) | |
| 353-459, gnl|echTel1|scaffold_315991 (64884-64750) | |
| 353-459, gnl|fr1|chrUn (73710708-73710614) | |
| 353-459, gnl|fr1|chrUn (73710715-73710618) | |
| 353-459, gnl|fr1|chrUn (73710733-73710611) | |
| 353-459, gnl|galGal2|chr11_random (259213-259119) | |
| 353-459, gnl|galGal2|chr11_random (259220-259123) | |
| 353-459, gnl|galGal2|chr11_random (259235-259107) | |
| 353-459, gnl|hg17|chr1 (51550219-51550313) | |
| 353-459, gnl|hg17|chr16 (72892936-72893071) | |
| 353-459, gnl|Hg17|chr16 (72892948-72893054) | |
| 353-459, gnl|hg17|chr17 (61624531-61624628) | |
| 353-459, gnl|loxAfr1|scaffold_1882 (104222-104131) | |
| 353-459, gnl|loxAfr1|scaffold_1882 (104229-104132) | |
| 353-459, gnl|loxAfr1|scaffold_1882 (104247-104116) | |
| 353-459, gnl|mm7|chr8 (106185096-106185007) | |
| 353-459, gnl|mm7|chr8 (106185104-106185008) | |
| 353-459, gnl|mm7|chr8 (106185122-106184991) | |
| 353-459, gnl|Mm7|chr8 (106185109-106185003) | |
| 353-459, gnl|monDom2|scaffold_23 (4210414-4210505) | |
| 353-459, gnl|monDom2|scaffold_23 (4210407-4210504) | |
| 353-459, gnl|monDom2|scaffold_23 (4210390-4210523) | |
| 353-459, gnl|oryCun1|scaffold_175916 (10315-10227) | |
| 353-459, gnl|oryCun1|scaffold_175916 (10323-10227) | |
| 353-459, gnl|oryCun1|scaffold_175916 (10341-10205) | |
| 353-459, gnl|panTro1|chr1 (49761537-49761631) | |
| 353-459, gnl|panTro1|chr18 (67278695-67278830) | |
| 353-459, gnl|panTro1|chr19_random (50426576-50426479) | |
| 353-459, gnl|rheMac2|chr1 (54198501-54198595) | |
| 353-459, gnl|rheMac2|chr16 (61585070-61585167) | |
| 353-459, gnl|rheMac2|chr20 (68354788-68354653) | |
| 353-459, gnl|rn3|chr19 (37461050-37460961) | |
| 353-459, gnl|rn3|chr19 (37461058-37460962) | |
| 353-459, gnl|rn3|chr19 (37461076-37460944) | |
| 353-459, gnl|tetNig1|chr13 (4322843-4322749) | |
| 353-459, gnl|tetNig1|chr13 (4322850-4322753) | |
| 353-459, gnl|tetNig1|chr13 (4322868-4322746) | |
| 353-459, gnl|xenTro1|scaffold_578 (511542-511448) | |
| 353-459, gnl|xenTro1|scaffold_578 (511549-511452) | |
| 353-459, gnl|xenTro1|scaffold_578 (511557-511432) | |
| 629-1590, gnl|bosTau2|chr18 (30557264-30556326) | |
| 629-1590, gnl|Hg17|chr16 (72896687-72897687) | |
| 629-1590, gnl|Mm7|chr8 (106181463-106180522) |
| Expressed library(ies): 39 entry(ies) | More info |
| Expressed library(ies): 39 entry(ies) | Help | Less info |
| sto (1.07894) | |
| ssp (0.813118) | |
| ste (0.676041) | |
| nms (0.427716) | |
| cst (0.420109) | |
| fcc (0.39557) | |
| elu (0.385356) | |
| cut (0.339847) | |
| vin (0.332557) | |
| ldo (0.291008) | |
| pty (0.285429) | |
| sug (0.254582) | |
| pgl (0.236967) | |
| med (0.232504) | |
| spc (0.226732) | |
| mas (0.210305) | |
| ill (0.175593) | |
| duo (0.172801) | |
| eye (0.170503) | |
| nje (0.16592) | |
| cki (0.165235) | |
| nco (0.161734) | |
| tbr (0.154178) | |
| cli (0.152812) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| ski (0.146735) | |
| lin (0.145603) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| che (0.136314) | |
| ova (0.129132) | |
| bla (0.124347) | |
| eru (0.120048) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 39 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sto (1.07894) | |
| ssp (0.813118) | |
| ste (0.676041) | |
| nms (0.427716) | |
| cst (0.420109) | |
| fcc (0.39557) | |
| elu (0.385356) | |
| cut (0.339847) | |
| vin (0.332557) | |
| ldo (0.291008) | |
| pty (0.285429) | |
| sug (0.254582) | |
| pgl (0.236967) | |
| med (0.232504) | |
| spc (0.226732) | |
| mas (0.210305) | |
| ill (0.175593) | |
| duo (0.172801) | |
| eye (0.170503) | |
| nje (0.16592) | |
| cki (0.165235) | |
| nco (0.161734) | |
| tbr (0.154178) | |
| cli (0.152812) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| ski (0.146735) | |
| lin (0.145603) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| che (0.136314) | |
| ova (0.129132) | |
| bla (0.124347) | |
| eru (0.120048) | |
| nbm (0.0993246) | |
| jej (0.0989218) |