Non-Coding RNA Search

Ss1.1-Lng1-LNG010043F10.5

Sequence:


               
               TGGAAGATCTTAAAAACAAGAATCTGCTGCTACGAGCTCAGTTGCGGCACCATGGAGTAG
AGGTCGTCATCAAGAATGACAGCAACTAACTCTGGGGATTCAGGGGCTTTGGGCCCTACA
GCCCCTTTCTGAGAACTGCAGATAGCCCAGGAGCAACAGGCTAACCCCGTGCCCCTTTCC
CTCACTGCCCACTTCTGGCGTGGGACTGGGGGAAGTCCAGAAGGTGTGTCTCTGAACTGA
GGCCCTGTGACACAGCAGCCTGCAGTGGTGTGAAACACACATGTGGATGTGCACTGACAG
CCTTGCCCAACCCCACCATGCAGCCCCTGGGCCCTTGTGCTCCTCTCGCACAATGCATGT
GCTGTCTCCATGCTGGATACGGGACACACTAAACTGGGGGGCTTGCCCTGTGCTTGCTTA
GAGTGCCAGCAGAGGGTCTGCTGACAAGCAGTGCTCTGTCTTGCCCCAGGACTCTGGCGC
TTCCACTGGTTCTTCCTTTCCTTGGAGCTCAGATGTGCACCTGAGGACTCTGGGGAACAG
GCTTTAGCAAAAAGTGGGGATAGGATGCTTAGCAGTGGCTGCTGCCCCAGGAAGAGGGGA
TTGGCCAGTGAGCAGCTAAGGCCTATGCAGAAGTCTCTGGAACGAGGGAGAACAACAGGC
AGGGGCCCACTGGGGGCCTAACCCCCTTGTGGGGATGGTTTTTTTTTTTTTTTTTTTTCC
CTTTCCTTTCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGAAGATCTTAAAAACAAGAATCTGCTGCTACGAGCTCAGTTGCGGCACCATGGAGTAG
AGGTCGTCATCAAGAATGACAGCAACTAACTCTGGGGATTCAGGGGCTTTGGGCCCTACA
GCCCCTTTCTGAGAACTGCAGATAGCCCAGGAGCAACAGGCTAACCCCGTGCCCCTTTCC
CTCACTGCCCACTTCTGGCGTGGGACTGGGGGAAGTCCAGAAGGTGTGTCTCTGAACTGA
GGCCCTGTGACACAGCAGCCTGCAGTGGTGTGAAACACACATGTGGATGTGCACTGACAG
CCTTGCCCAACCCCACCATGCAGCCCCTGGGCCCTTGTGCTCCTCTCGCACAATGCATGT
GCTGTCTCCATGCTGGATACGGGACACACTAAACTGGGGGGCTTGCCCTGTGCTTGCTTA
GAGTGCCAGCAGAGGGTCTGCTGACAAGCAGTGCTCTGTCTTGCCCCAGGACTCTGGCGC
TTCCACTGGTTCTTCCTTTCCTTGGAGCTCAGATGTGCACCTGAGGACTCTGGGGAACAG
GCTTTAGCAAAAAGTGGGGATAGGATGCTTAGCAGTGGCTGCTGCCCCAGGAAGAGGGGA
TTGGCCAGTGAGCAGCTAAGGCCTATGCAGAAGTCTCTGGAACGAGGGAGAACAACAGGC
AGGGGCCCACTGGGGGCCTAACCCCCTTGTGGGGATGGTTTTTTTTTTTTTTTTTTTTCC
CTTTCCTTTCCT

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               3-271, - strand, RNAz p=0.997338
               

               
               582-729, - strand, RNAz p=0.998512
               

               
               586-729, - strand, RNAz p=0.89177

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-271, - strand, RNAz p=0.997338
               

               
               582-729, - strand, RNAz p=0.998512
               

               
               586-729, - strand, RNAz p=0.89177

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               3-729, gnl|bosTau2|chr3 (7755330-7756059)
               

               
               3-729, gnl|canFam2|chr38 (24418675-24418152)
               

               
               3-729, gnl|dasNov1|scaffold_31369 (4665-4147)
               

               
               3-729, gnl|echTel1|scaffold_319439 (42374-42898)
               

               
               3-729, gnl|hg17|chr1 (157822093-157822631)
               

               
               3-729, gnl|Hg17|chr1 (157822869-157822140)
               

               
               3-729, gnl|loxAfr1|scaffold_71096 (6471-5944)
               

               
               3-729, gnl|mm7|chr1 (171388873-171388365)
               

               
               3-729, gnl|Mm7|chr1 (171388128-171388818)
               

               
               3-729, gnl|monDom2|scaffold_0 (28838912-28838386)
               

               
               3-729, gnl|oryCun1|scaffold_204479 (66652-66162)
               

               
               3-729, gnl|panTro1|chr1 (139888082-139888616)
               

               
               3-729, gnl|rheMac2|chr1 (139649677-139650223)
               

               
               3-729, gnl|rn3|chr13 (87533371-87532881)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-729, gnl|bosTau2|chr3 (7755330-7756059)
               

               
               3-729, gnl|canFam2|chr38 (24418675-24418152)
               

               
               3-729, gnl|dasNov1|scaffold_31369 (4665-4147)
               

               
               3-729, gnl|echTel1|scaffold_319439 (42374-42898)
               

               
               3-729, gnl|hg17|chr1 (157822093-157822631)
               

               
               3-729, gnl|Hg17|chr1 (157822869-157822140)
               

               
               3-729, gnl|loxAfr1|scaffold_71096 (6471-5944)
               

               
               3-729, gnl|mm7|chr1 (171388873-171388365)
               

               
               3-729, gnl|Mm7|chr1 (171388128-171388818)
               

               
               3-729, gnl|monDom2|scaffold_0 (28838912-28838386)
               

               
               3-729, gnl|oryCun1|scaffold_204479 (66652-66162)
               

               
               3-729, gnl|panTro1|chr1 (139888082-139888616)
               

               
               3-729, gnl|rheMac2|chr1 (139649677-139650223)
               

               
               3-729, gnl|rn3|chr13 (87533371-87532881)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               fbs (0.175346)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               cbr (0.127975)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               cbr (0.127975)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	3-271, - strand, RNAz p=0.997338
	582-729, - strand, RNAz p=0.998512
	586-729, - strand, RNAz p=0.89177

	3-729, gnl\|bosTau2\|chr3 (7755330-7756059)
	3-729, gnl\|canFam2\|chr38 (24418675-24418152)
	3-729, gnl\|dasNov1\|scaffold_31369 (4665-4147)
	3-729, gnl\|echTel1\|scaffold_319439 (42374-42898)
	3-729, gnl\|hg17\|chr1 (157822093-157822631)
	3-729, gnl\|Hg17\|chr1 (157822869-157822140)
	3-729, gnl\|loxAfr1\|scaffold_71096 (6471-5944)
	3-729, gnl\|mm7\|chr1 (171388873-171388365)
	3-729, gnl\|Mm7\|chr1 (171388128-171388818)
	3-729, gnl\|monDom2\|scaffold_0 (28838912-28838386)
	3-729, gnl\|oryCun1\|scaffold_204479 (66652-66162)
	3-729, gnl\|panTro1\|chr1 (139888082-139888616)
	3-729, gnl\|rheMac2\|chr1 (139649677-139650223)
	3-729, gnl\|rn3\|chr13 (87533371-87532881)

	fbs (0.175346)
	lnt (0.142308)
	che (0.136314)
	cbr (0.127975)
	cty (0.10408)
	jej (0.0989218)