Ss1.1-Lng1-LNG010043G11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGGGCTTCGGCCCCGGCCTGTCAGTCAGAGTGGCTAGGTACTAGCAGAGGGGCTCCGCC GGGCCCGCGCAGGTATGGCGGCGGTGTTTGACCTGGACCTGGAGACGGAGGAAGGCAGCG AGGGCGAAGGCGAGCCAGAGTTCAGCCCGGCGGATGCGTGTCCCCTTGCCGAGTCGAGGG CGGCTGGCCTGGAGCCTGTGGGACACTATGAGGAGGTGGAGCTGACAGAAACCAGTGTAA ACCCGGGCCCTGAGCGCATTGGGCCCCACTGCTTTGAGCTGCTGCGCGTGCTGGGCAAGG GCAACTACGGCAAGGTGTTCCAGGTGAGAAAGGTGCAGGGCACCAACCTGGGCAAAATCT ATGCCATGAAAGTCTTGAGGAAGGCCAAAATCGTGCGCAATGCCAAGGACACAGCCCACA CCCGGGCTGAGCGGAACATTCTAGAGTCAGTGAAGCACCCCTTCATTGTCGAGCTGGCCT ATGCCTTCCAGACTGGTGGCAAACTCTACCTCATCCTCGAGTGCCTTAGTGGCGGCGAGC TCTTCACGCGGCTGGAGCGAGAGGGCATCTTCCTGGAAGACACGGCCTGCTTCTACCTGT CAGAGATCACGCTGGCCCTGGGCCACCTCCACTCCCAAGGCATCATCTACCGGGACCTCA AACCTGAGAACGTCATGCTCAGCAGCCAGGGCCACATCAAGCTGACGGACTTCGGCCTCT GCAAGGAGTCTATCCACGAGGGCACGGTCACCCACACCTTCTGTGGCACCATCGAGTACA TGGCCCCTGAGATTCTGGTGCGCAGTGGCCACAACCGGGCGGTGGACTGGTGGAGCCTGG GGGCCCTGATGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGGGCTTCGGCCCCGGCCTGTCAGTCAGAGTGGCTAGGTACTAGCAGAGGGGCTCCGCC GGGCCCGCGCAGGTATGGCGGCGGTGTTTGACCTGGACCTGGAGACGGAGGAAGGCAGCG AGGGCGAAGGCGAGCCAGAGTTCAGCCCGGCGGATGCGTGTCCCCTTGCCGAGTCGAGGG CGGCTGGCCTGGAGCCTGTGGGACACTATGAGGAGGTGGAGCTGACAGAAACCAGTGTAA ACCCGGGCCCTGAGCGCATTGGGCCCCACTGCTTTGAGCTGCTGCGCGTGCTGGGCAAGG GCAACTACGGCAAGGTGTTCCAGGTGAGAAAGGTGCAGGGCACCAACCTGGGCAAAATCT ATGCCATGAAAGTCTTGAGGAAGGCCAAAATCGTGCGCAATGCCAAGGACACAGCCCACA CCCGGGCTGAGCGGAACATTCTAGAGTCAGTGAAGCACCCCTTCATTGTCGAGCTGGCCT ATGCCTTCCAGACTGGTGGCAAACTCTACCTCATCCTCGAGTGCCTTAGTGGCGGCGAGC TCTTCACGCGGCTGGAGCGAGAGGGCATCTTCCTGGAAGACACGGCCTGCTTCTACCTGT CAGAGATCACGCTGGCCCTGGGCCACCTCCACTCCCAAGGCATCATCTACCGGGACCTCA AACCTGAGAACGTCATGCTCAGCAGCCAGGGCCACATCAAGCTGACGGACTTCGGCCTCT GCAAGGAGTCTATCCACGAGGGCACGGTCACCCACACCTTCTGTGGCACCATCGAGTACA TGGCCCCTGAGATTCTGGTGCGCAGTGGCCACAACCGGGCGGTGGACTGGTGGAGCCTGG GGGCCCTGATGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 591-691, - strand, RNAz p=0.555043 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 591-691, - strand, RNAz p=0.555043 |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 1-160, gnl|bosTau2|chr29 (39741216-39741056) | |
| 1-160, gnl|Hg17|chr11 (66952524-66952677) | |
| 1-160, gnl|Mm7|chr19 (4058123-4057967) | |
| 305-517, gnl|bosTau2|chr29 (33506166-33506381) | |
| 305-517, gnl|Hg17|chr11 (63884212-63884427) | |
| 305-517, gnl|Mm7|chr19 (6659541-6659326) | |
| 306-515, gnl|bosTau2|chr10 (68798435-68798223) | |
| 306-515, gnl|canFam2|chr8 (64940837-64941084) | |
| 306-515, gnl|danRer3|chr17 (43903216-43902966) | |
| 306-515, gnl|dasNov1|scaffold_90297 (6775-7023) | |
| 306-515, gnl|echTel1|scaffold_207530 (5625-5875) | |
| 306-515, gnl|fr1|chrUn (2191136-2191375) | |
| 306-515, gnl|galGal2|chr5 (40970709-40970958) | |
| 306-515, gnl|hg17|chr14 (90514391-90514638) | |
| 306-515, gnl|Hg17|chr14 (90514619-90514407) | |
| 306-515, gnl|loxAfr1|scaffold_943 (131216-131466) | |
| 306-515, gnl|mm7|chr12 (98149611-98149859) | |
| 306-515, gnl|Mm7|chr12 (98149839-98149627) | |
| 306-515, gnl|monDom2|scaffold_8 (34135984-34135722) | |
| 306-515, gnl|oryCun1|scaffold_172949 (52270-52519) | |
| 306-515, gnl|panTro1|chr15 (90842290-90842538) | |
| 306-515, gnl|rheMac2|chr7 (154194887-154195135) | |
| 306-515, gnl|rn3|chr6 (124919347-124919595) | |
| 306-515, gnl|tetNig1|chr10 (10805346-10805585) | |
| 306-515, gnl|xenTro1|scaffold_22 (2470963-2471216) | |
| 591-691, gnl|bosTau2|chr29 (39737699-39737599) | |
| 591-691, gnl|canFam2|chr18 (53063028-53062914) | |
| 591-691, gnl|danRer3|chr15 (11208891-11208784) | |
| 591-691, gnl|dasNov1|scaffold_9478 (27847-27735) | |
| 591-691, gnl|echTel1|scaffold_170311 (3138-3026) | |
| 591-691, gnl|fr1|chrUn (17438381-17438509) | |
| 591-691, gnl|galGal2|chr19 (6954710-6954824) | |
| 591-691, gnl|hg17|chr11 (66956774-66956888) | |
| 591-691, gnl|Hg17|chr11 (66956785-66956885) | |
| 591-691, gnl|loxAfr1|scaffold_76970 (4542-4428) | |
| 591-691, gnl|mm7|chr19 (4054145-4054031) | |
| 591-691, gnl|Mm7|chr19 (4054132-4054032) | |
| 591-691, gnl|monDom2|scaffold_107 (1642145-1642031) | |
| 591-691, gnl|oryCun1|scaffold_157905 (653-767) | |
| 591-691, gnl|panTro1|chr9 (68216935-68217049) | |
| 591-691, gnl|rheMac2|chr14 (7025584-7025470) | |
| 591-691, gnl|rn3|chr1 (206896966-206896852) | |
| 591-691, gnl|tetNig1|chrUn_random (89581293-89581411) | |
| 591-691, gnl|xenTro1|scaffold_38 (2999114-2999002) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-160, gnl|bosTau2|chr29 (39741216-39741056) | |
| 1-160, gnl|Hg17|chr11 (66952524-66952677) | |
| 1-160, gnl|Mm7|chr19 (4058123-4057967) | |
| 305-517, gnl|bosTau2|chr29 (33506166-33506381) | |
| 305-517, gnl|Hg17|chr11 (63884212-63884427) | |
| 305-517, gnl|Mm7|chr19 (6659541-6659326) | |
| 306-515, gnl|bosTau2|chr10 (68798435-68798223) | |
| 306-515, gnl|canFam2|chr8 (64940837-64941084) | |
| 306-515, gnl|danRer3|chr17 (43903216-43902966) | |
| 306-515, gnl|dasNov1|scaffold_90297 (6775-7023) | |
| 306-515, gnl|echTel1|scaffold_207530 (5625-5875) | |
| 306-515, gnl|fr1|chrUn (2191136-2191375) | |
| 306-515, gnl|galGal2|chr5 (40970709-40970958) | |
| 306-515, gnl|hg17|chr14 (90514391-90514638) | |
| 306-515, gnl|Hg17|chr14 (90514619-90514407) | |
| 306-515, gnl|loxAfr1|scaffold_943 (131216-131466) | |
| 306-515, gnl|mm7|chr12 (98149611-98149859) | |
| 306-515, gnl|Mm7|chr12 (98149839-98149627) | |
| 306-515, gnl|monDom2|scaffold_8 (34135984-34135722) | |
| 306-515, gnl|oryCun1|scaffold_172949 (52270-52519) | |
| 306-515, gnl|panTro1|chr15 (90842290-90842538) | |
| 306-515, gnl|rheMac2|chr7 (154194887-154195135) | |
| 306-515, gnl|rn3|chr6 (124919347-124919595) | |
| 306-515, gnl|tetNig1|chr10 (10805346-10805585) | |
| 306-515, gnl|xenTro1|scaffold_22 (2470963-2471216) | |
| 591-691, gnl|bosTau2|chr29 (39737699-39737599) | |
| 591-691, gnl|canFam2|chr18 (53063028-53062914) | |
| 591-691, gnl|danRer3|chr15 (11208891-11208784) | |
| 591-691, gnl|dasNov1|scaffold_9478 (27847-27735) | |
| 591-691, gnl|echTel1|scaffold_170311 (3138-3026) | |
| 591-691, gnl|fr1|chrUn (17438381-17438509) | |
| 591-691, gnl|galGal2|chr19 (6954710-6954824) | |
| 591-691, gnl|hg17|chr11 (66956774-66956888) | |
| 591-691, gnl|Hg17|chr11 (66956785-66956885) | |
| 591-691, gnl|loxAfr1|scaffold_76970 (4542-4428) | |
| 591-691, gnl|mm7|chr19 (4054145-4054031) | |
| 591-691, gnl|Mm7|chr19 (4054132-4054032) | |
| 591-691, gnl|monDom2|scaffold_107 (1642145-1642031) | |
| 591-691, gnl|oryCun1|scaffold_157905 (653-767) | |
| 591-691, gnl|panTro1|chr9 (68216935-68217049) | |
| 591-691, gnl|rheMac2|chr14 (7025584-7025470) | |
| 591-691, gnl|rn3|chr1 (206896966-206896852) | |
| 591-691, gnl|tetNig1|chrUn_random (89581293-89581411) | |
| 591-691, gnl|xenTro1|scaffold_38 (2999114-2999002) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.118301) |