Non-Coding RNA Search

Ss1.1-Lng1-LNG010044A07.5.5

Sequence:


               
               GGTGGCCTGGGTTCCCTTTCTAGGTTGGAGCAGAGCAGTGGGGTCTCTGCGCCTGCCTGG
GGCCCTCGATGGCTGCTTTCTTTAACAAGCGCCTTCTGTGTCGAGCCCTGTGCTAGGTGC
TCCTTGGGAGAAAAGGTCAGTTTCCCAGCCTCCACCAGGGTCGTCTCAGACTTTGGAGGC
CGACTTCTTTCTGCCGTGATACTGCAGCCTTTTACCAGCGCCTGCTCTGTGCCCCTGAGA
GAGAGAGAGGGAGAGAGAGAGAGAGATGAAGGAAATGCTGACTGGGTTCTGGCGTTTCGT
GCAATGCTGCGGCGGGGAGACCTGACGCTAACTCCGAGACACTTGAATTAACTTTAGCAG
AAGAGAAATGGAGGAACCATAGAACATTAAGGATGAATTCGGGAAGACCTGAGACCATGG
AGAACTTGCCTGCTCTCTACACTATTTTCCAAGGAGAGGTTGCTATGGTGACAGACTATG
GAGCCTTTATCAAAATCCCAGGCTGTCGGAAACAAGGTCTGGTCCATCGAACTCACATGT
CATCCTGTCGAGTGGATAAGCCTTCTGAGATAGTAGATGTCGGAGACAAAGTGTGGGTGA
AGCTAATTGGCCGAGAGATGAAAAATGATAGGATAAAAGTATCCCTCTCCATGAAAGTTG
TCAACCAAGGGACTGGGAAGGACCTTGACCCCAACAACGTTATCATTGAGCAAGAAGAGA
GGCGGAGGAGGTCCTTCCAGGATTACACTGGGCAGAAGATCACTCTCGAGGCTGTCCTGA
ACACTACCTGCAAGAAGTGTGGCTGTAAAGGCCACTTTGCGAAGGATTGTTTCATGCAGC
CAGGTGGGACCAAGTACTCTCTGATACCTGATGAGGAAGAGGAGAAGGAAGAGGCCAAGT
CAGCAGAGTTTGAAAAGCCTGACCCCATGAAGAATTCTTCTAGAAAAAGAAAGAAAGAAA
AGAAGAAAAAGAAACATAGAGACAGGAAGTCATCTAACTCTGACAGCTCAGACTCTGAGA
GTGATACAGGCAAGAGGGCAAGGCACACATCAAAAGACAACAAGGCGGCCAAGAAGAAGA
AAAAGAAGAAGAAGCACAAGAAGAAGCACAAGGAGTGAGAGTGGAAAGAGTAGAAGGGGT
GGTTGAGAGAAGGAAACCGGAGCCTTGTGCCTTGAAGCCCTGGCTCCTGGAAGGACTCAC
TAGTGAGAATGTGGCCTCCCACCCCATTTTCTCTCCCATGGAAGGTGGCTTCCCCTTAGC
CACAGGCAGGTTTGGGAGTTAAGTATCAAAACCATCTGCCTGAACGAGTTGTTTCCTTAT
CACTCCTGGTCCCTCTGCAAGTGACCCCTGCAGCTCACCCTCTCATCGACCCAACTTCCT
TCATTCAGCAGGAGGTCCTGTTAACCTCTCCAGCTGCCACTGCCAGAGCCAGATTCCTAT
ACAGGAGTCTAGGCTAGAGCCACAGGTACTGCTGTGGAGGTGAGTCTGGCTATAGTTGGA
GGACAGTGATTGGCCTGCTGTTGGTCTGCCCTGGGCTAATTGGTGGGTGATCTCTGTAGC
ATCCAACACAGGCGCAGAGGGAGACTGGCAGTACAAGGGAGAACATGGTAAGAAGTGGTG
CTCACTTTTTCCAGTCCCCCAACACGATTCTACTGTGTTAGAAGCGACAGCCAGCAGTCA
CAGCCAGAAACCATTGTTTGCAGTGACTCAGCTTGTGTGTGACATTCCATCAGACCACTG
AACCAAACAGCTCAAGCCAAGATCGTTGCTTTACTTTGCATTTACTACAGTGTGAGTCAA
ATGGTTCCATTTCAGGTCTCTGCTTAAATTCCTGGCACTAAATGGAAGTGTGTTTGGTTT
TAAACTTACTGAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGGCCTGGGTTCCCTTTCTAGGTTGGAGCAGAGCAGTGGGGTCTCTGCGCCTGCCTGG
GGCCCTCGATGGCTGCTTTCTTTAACAAGCGCCTTCTGTGTCGAGCCCTGTGCTAGGTGC
TCCTTGGGAGAAAAGGTCAGTTTCCCAGCCTCCACCAGGGTCGTCTCAGACTTTGGAGGC
CGACTTCTTTCTGCCGTGATACTGCAGCCTTTTACCAGCGCCTGCTCTGTGCCCCTGAGA
GAGAGAGAGGGAGAGAGAGAGAGAGATGAAGGAAATGCTGACTGGGTTCTGGCGTTTCGT
GCAATGCTGCGGCGGGGAGACCTGACGCTAACTCCGAGACACTTGAATTAACTTTAGCAG
AAGAGAAATGGAGGAACCATAGAACATTAAGGATGAATTCGGGAAGACCTGAGACCATGG
AGAACTTGCCTGCTCTCTACACTATTTTCCAAGGAGAGGTTGCTATGGTGACAGACTATG
GAGCCTTTATCAAAATCCCAGGCTGTCGGAAACAAGGTCTGGTCCATCGAACTCACATGT
CATCCTGTCGAGTGGATAAGCCTTCTGAGATAGTAGATGTCGGAGACAAAGTGTGGGTGA
AGCTAATTGGCCGAGAGATGAAAAATGATAGGATAAAAGTATCCCTCTCCATGAAAGTTG
TCAACCAAGGGACTGGGAAGGACCTTGACCCCAACAACGTTATCATTGAGCAAGAAGAGA
GGCGGAGGAGGTCCTTCCAGGATTACACTGGGCAGAAGATCACTCTCGAGGCTGTCCTGA
ACACTACCTGCAAGAAGTGTGGCTGTAAAGGCCACTTTGCGAAGGATTGTTTCATGCAGC
CAGGTGGGACCAAGTACTCTCTGATACCTGATGAGGAAGAGGAGAAGGAAGAGGCCAAGT
CAGCAGAGTTTGAAAAGCCTGACCCCATGAAGAATTCTTCTAGAAAAAGAAAGAAAGAAA
AGAAGAAAAAGAAACATAGAGACAGGAAGTCATCTAACTCTGACAGCTCAGACTCTGAGA
GTGATACAGGCAAGAGGGCAAGGCACACATCAAAAGACAACAAGGCGGCCAAGAAGAAGA
AAAAGAAGAAGAAGCACAAGAAGAAGCACAAGGAGTGAGAGTGGAAAGAGTAGAAGGGGT
GGTTGAGAGAAGGAAACCGGAGCCTTGTGCCTTGAAGCCCTGGCTCCTGGAAGGACTCAC
TAGTGAGAATGTGGCCTCCCACCCCATTTTCTCTCCCATGGAAGGTGGCTTCCCCTTAGC
CACAGGCAGGTTTGGGAGTTAAGTATCAAAACCATCTGCCTGAACGAGTTGTTTCCTTAT
CACTCCTGGTCCCTCTGCAAGTGACCCCTGCAGCTCACCCTCTCATCGACCCAACTTCCT
TCATTCAGCAGGAGGTCCTGTTAACCTCTCCAGCTGCCACTGCCAGAGCCAGATTCCTAT
ACAGGAGTCTAGGCTAGAGCCACAGGTACTGCTGTGGAGGTGAGTCTGGCTATAGTTGGA
GGACAGTGATTGGCCTGCTGTTGGTCTGCCCTGGGCTAATTGGTGGGTGATCTCTGTAGC
ATCCAACACAGGCGCAGAGGGAGACTGGCAGTACAAGGGAGAACATGGTAAGAAGTGGTG
CTCACTTTTTCCAGTCCCCCAACACGATTCTACTGTGTTAGAAGCGACAGCCAGCAGTCA
CAGCCAGAAACCATTGTTTGCAGTGACTCAGCTTGTGTGTGACATTCCATCAGACCACTG
AACCAAACAGCTCAAGCCAAGATCGTTGCTTTACTTTGCATTTACTACAGTGTGAGTCAA
ATGGTTCCATTTCAGGTCTCTGCTTAAATTCCTGGCACTAAATGGAAGTGTGTTTGGTTT
TAAACTTACTGAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q9NP64_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q9NP64_HUMAN

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               121-1514, - strand, RNAz p=0.999258
               

               
               601-960, + strand, RNAz p=0.940011
               

               
               1081-1238, - strand, RNAz p=0.997717

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-1514, - strand, RNAz p=0.999258
               

               
               601-960, + strand, RNAz p=0.940011
               

               
               1081-1238, - strand, RNAz p=0.997717

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

Help | Less info


               
               5-249, gnl|bosTau2|chr2 (75474457-75474701)
               

               
               5-249, gnl|Hg17|chr1 (31439164-31439409)
               


               
               282-1848, gnl|bosTau2|chr15 (52733650-52735199)
               

               
               282-1848, gnl|Mm7|chr3 (36888379-36889671)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-249, gnl|bosTau2|chr2 (75474457-75474701)
               

               
               5-249, gnl|Hg17|chr1 (31439164-31439409)
               


               
               282-1848, gnl|bosTau2|chr15 (52733650-52735199)
               

               
               282-1848, gnl|Mm7|chr3 (36888379-36889671)

Expressed library(ies): 24 entry(ies)

More info

Expressed library(ies): 24 entry(ies)

Help | Less info


               
               nco (0.485201)
               

               
               ece (0.45861)
               

               
               ebs (0.354904)
               

               
               fbs (0.350693)
               

               
               fhi (0.339155)
               

               
               pty (0.285429)
               

               
               ssp (0.271039)
               

               
               sto (0.179824)
               

               
               eye (0.170503)
               

               
               cag (0.151194)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.485201)
               

               
               ece (0.45861)
               

               
               ebs (0.354904)
               

               
               fbs (0.350693)
               

               
               fhi (0.339155)
               

               
               pty (0.285429)
               

               
               ssp (0.271039)
               

               
               sto (0.179824)
               

               
               eye (0.170503)
               

               
               cag (0.151194)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	121-1514, - strand, RNAz p=0.999258
	601-960, + strand, RNAz p=0.940011
	1081-1238, - strand, RNAz p=0.997717

	5-249, gnl\|bosTau2\|chr2 (75474457-75474701)
	5-249, gnl\|Hg17\|chr1 (31439164-31439409)

	282-1848, gnl\|bosTau2\|chr15 (52733650-52735199)
	282-1848, gnl\|Mm7\|chr3 (36888379-36889671)

	nco (0.485201)
	ece (0.45861)
	ebs (0.354904)
	fbs (0.350693)
	fhi (0.339155)
	pty (0.285429)
	ssp (0.271039)
	sto (0.179824)
	eye (0.170503)
	cag (0.151194)
	fat (0.147427)
	spl (0.143184)
	hyp (0.142837)
	cst (0.140036)
	hlv (0.139256)
	nca (0.136874)
	nmm (0.132802)
	sug (0.127291)
	ese (0.126502)
	eru (0.120048)
	med (0.116252)
	ecc (0.115035)
	eje (0.0988338)
	ldo (0.0970026)