Non-Coding RNA Search

Ss1.1-Lng1-LNG010044A11.5

Sequence:


               
               GTTCACAGGAGAGGGGGTGGGCCTCTCCTCTCCGGGACAGGAACTGGAGTCAGAGGCTTT
CCCTGCAACGGGTTCAGAGGGAAGAGCAGTAGGAATGCCCTGCAGCGCCTGGGTTTCTGA
ACCGTCTCCCTTGGAAAAGTCCGACTGCCGCTGGCCCTCACCCCTGCAGGAATCCGGATG
CAGACCAAGTTCAGCAGCACGCGGGACATGCTGGATGCCGATGGAGACACCACCATGAGC
TTGCATCCTCGAACCTCTACCACAACCCAGCGGCCAGAGCCTGGCCACCCAGAGCACCGG
CCTCCCTCTTCTGCTTGGCGTCCCGTGGCCCTGACCCTGCTGACTCTGTGTTTGGTGCTG
CTGATTGGCCTGGCAGCTCTGGGGCTTGTGTTTTTTCAGTTCTACCAGCTCTCCAACACT
CAGCAAGACAGCATTTCTCAAAAGGAAGAAAGGTTGGGGAATCTCTCCCAACAGCTGCAA
TCTCTCCAAACCCAGAACAGGAAGCTTGCGGAAACTCTCCACCATGTGGCTGAAAAACTC
TGTCGTGAGCTCTATAACAAAACTGGAGAGCACAGATGCAGCCCTTGTCCAGAAAAATGG
AAGTGGCATGGGGACAAATGCTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCACAGGAGAGGGGGTGGGCCTCTCCTCTCCGGGACAGGAACTGGAGTCAGAGGCTTT
CCCTGCAACGGGTTCAGAGGGAAGAGCAGTAGGAATGCCCTGCAGCGCCTGGGTTTCTGA
ACCGTCTCCCTTGGAAAAGTCCGACTGCCGCTGGCCCTCACCCCTGCAGGAATCCGGATG
CAGACCAAGTTCAGCAGCACGCGGGACATGCTGGATGCCGATGGAGACACCACCATGAGC
TTGCATCCTCGAACCTCTACCACAACCCAGCGGCCAGAGCCTGGCCACCCAGAGCACCGG
CCTCCCTCTTCTGCTTGGCGTCCCGTGGCCCTGACCCTGCTGACTCTGTGTTTGGTGCTG
CTGATTGGCCTGGCAGCTCTGGGGCTTGTGTTTTTTCAGTTCTACCAGCTCTCCAACACT
CAGCAAGACAGCATTTCTCAAAAGGAAGAAAGGTTGGGGAATCTCTCCCAACAGCTGCAA
TCTCTCCAAACCCAGAACAGGAAGCTTGCGGAAACTCTCCACCATGTGGCTGAAAAACTC
TGTCGTGAGCTCTATAACAAAACTGGAGAGCACAGATGCAGCCCTTGTCCAGAAAAATGG
AAGTGGCATGGGGACAAATGCTAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8BZ31_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8BZ31_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               197-292, - strand, RNAz p=0.684904

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               197-292, - strand, RNAz p=0.684904

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-292, gnl|bosTau2|chr5 (58473296-58473581)
               

               
               1-292, gnl|canFam2|chr27 (38915646-38915270)
               

               
               1-292, gnl|dasNov1|scaffold_2081 (44893-45261)
               

               
               1-292, gnl|echTel1|scaffold_253561 (8165-8526)
               

               
               1-292, gnl|hg17|chr12 (10142652-10143024)
               

               
               1-292, gnl|Hg17|chr12 (10142970-10142674)
               

               
               1-292, gnl|loxAfr1|scaffold_41128 (3262-2888)
               

               
               1-292, gnl|mm7|chr6 (129474889-129475262)
               

               
               1-292, gnl|Mm7|chr6 (129475211-129474916)
               

               
               1-292, gnl|monDom2|scaffold_31 (20709327-20708943)
               

               
               1-292, gnl|oryCun1|scaffold_174613 (96184-96536)
               

               
               1-292, gnl|panTro1|chrUn_random (36413716-36414088)
               

               
               1-292, gnl|rheMac2|chr11 (10288976-10289348)
               

               
               1-292, gnl|rn3|chr4 (166966544-166966918)
               


               
               392-568, gnl|bosTau2|chr5 (58485812-58485988)
               

               
               392-568, gnl|Hg17|chr12 (10125279-10125103)
               

               
               392-568, gnl|Mm7|chr6 (129458605-129458429)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-292, gnl|bosTau2|chr5 (58473296-58473581)
               

               
               1-292, gnl|canFam2|chr27 (38915646-38915270)
               

               
               1-292, gnl|dasNov1|scaffold_2081 (44893-45261)
               

               
               1-292, gnl|echTel1|scaffold_253561 (8165-8526)
               

               
               1-292, gnl|hg17|chr12 (10142652-10143024)
               

               
               1-292, gnl|Hg17|chr12 (10142970-10142674)
               

               
               1-292, gnl|loxAfr1|scaffold_41128 (3262-2888)
               

               
               1-292, gnl|mm7|chr6 (129474889-129475262)
               

               
               1-292, gnl|Mm7|chr6 (129475211-129474916)
               

               
               1-292, gnl|monDom2|scaffold_31 (20709327-20708943)
               

               
               1-292, gnl|oryCun1|scaffold_174613 (96184-96536)
               

               
               1-292, gnl|panTro1|chrUn_random (36413716-36414088)
               

               
               1-292, gnl|rheMac2|chr11 (10288976-10289348)
               

               
               1-292, gnl|rn3|chr4 (166966544-166966918)
               


               
               392-568, gnl|bosTau2|chr5 (58485812-58485988)
               

               
               392-568, gnl|Hg17|chr12 (10125279-10125103)
               

               
               392-568, gnl|Mm7|chr6 (129458605-129458429)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               hlv (0.278513)
               

               
               pla (0.133672)
               

               
               cov (0.132153)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.278513)
               

               
               pla (0.133672)
               

               
               cov (0.132153)

	1-292, gnl\|bosTau2\|chr5 (58473296-58473581)
	1-292, gnl\|canFam2\|chr27 (38915646-38915270)
	1-292, gnl\|dasNov1\|scaffold_2081 (44893-45261)
	1-292, gnl\|echTel1\|scaffold_253561 (8165-8526)
	1-292, gnl\|hg17\|chr12 (10142652-10143024)
	1-292, gnl\|Hg17\|chr12 (10142970-10142674)
	1-292, gnl\|loxAfr1\|scaffold_41128 (3262-2888)
	1-292, gnl\|mm7\|chr6 (129474889-129475262)
	1-292, gnl\|Mm7\|chr6 (129475211-129474916)
	1-292, gnl\|monDom2\|scaffold_31 (20709327-20708943)
	1-292, gnl\|oryCun1\|scaffold_174613 (96184-96536)
	1-292, gnl\|panTro1\|chrUn_random (36413716-36414088)
	1-292, gnl\|rheMac2\|chr11 (10288976-10289348)
	1-292, gnl\|rn3\|chr4 (166966544-166966918)

	392-568, gnl\|bosTau2\|chr5 (58485812-58485988)
	392-568, gnl\|Hg17\|chr12 (10125279-10125103)
	392-568, gnl\|Mm7\|chr6 (129458605-129458429)