Ss1.1-Lng1-LNG010044B03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGAAACTTTTGCAGCGGCTGGGTAGCGGCAGGTCTCCTGCTCCTCGGGGCCACTGCCAG GCTTGCCGAGTCCTGGGACGGCTCTCGCCCCCGCCGCTACTCTCCCGCGCTCTCCTCGCT CCCCGCGAAGCAGGATGGCAGGGACCGTGCGCACCGCGTGCTTGGTGGTGGCGATGCTGC TTAGCTTGGACTGCCCCGGACAGGCGCAGCCCCCGCCGCCGCCGGACGCCACCTGTCATC AGGTCCGCTCCTTCTTCCAGAGACTGCAGCCCGGACTCAAGTGGGTGCCAGAAACCCCGG TGCCAGGATCAGATTTACAAGTATGTCTCCCCAAGGGCCCGACATGCTGCTCAAGAAAGA TGGAAGAAAAATACCAACTAACAGCGCGATTGAACATGGAACAACTGCTTCAGTCTGCAA GTATGGAGCTCAAGTTCTTAATTATTCAGAATGCTGCGGTTTTCCAAGAGGCCTTTGAAA TCGTTGTTCGCCATGCCAAGAACTACACCAACGCCATGTTCAAGAACAACTATCCGAGCC TGACCCCACAAGCTTTTGAGTTCGTGGGTGAATTTTTCACCGATGTGTCTCTCTACATCC TGGGTTCGGACATCAACGTGGATGACATGGTCAATGAACTGTTTGACAGCCTGTTCCCAG TCATCTATACCCAGCTGATGAACCCAGGCCTGCCCGAGTCGGCCTTGGACATCAATGAGT GCCTCCGAGGGGCGAGGCGTGACCTGAAAGTGTTTGGGAATTTCCCCAAGCTTATTATGA CCCAGGTTTCCAAGTCACTCCAAGTCACGAGAATCTTCCTTCAGGCCCTGAATCTCGGAA TTGAAGTGATCAACACAACAGATCACCTGAAGTTCAGTAAGGACTGCGGCCGAATGCTTA CCCGAATGTGGTATTGCTCGTACTGCCAGGGGCTGATGATGGTTAAGCCTTGTGGTGGCT ACTGCAACGTGGTCATGCAAGGCTGTATGGCGGGCGTGGTGGAGATTGACAAGTACTGGA GAGAATACATTCTGTCTCTGGAAGAACTGGTGAATGGCATGTACAGAATCTATGACATGG AGAATGTACTGCTTGGGCTCTTTTCAACCATCCACGACTCCATCCAGTACGTCCAGAAGA ATGGAGGAAAGCTGGCCACCACTATTGGCAAGTTATGCGCCCATTCTCAGCAACGTCAGT ATAGATCTGCTTATTATCCTGAAGATCTGTTTATTGACAAGAAGGTATTAAAAGTTGCTC ATGTAGAACATGAAGAAACCTTATCCAGCCGGAGAAGGGAACTAATTCAGAAGTTGAAAT CTTTCATCAGCTTCTACAGTGCTTTGCCTGGCTACATCTGCAGCCACAGCCCTGTGGCCG AAAATGACACTCTCTGCTGGAATGGACAAGAACTCGTGGAGAGGTACAGCCAAAAGGCAG CCAGGAATGGAATGAAAAACCAGTTCAACCTCCATGAGCTGAAAATGAAGGGCCCTGAGC CAGTGGTCAGTCAAATTATTGACAAACTGAAGCACATTAACCAGCTCCTGAGAACCATGT CTGTGCCAAAAGGCAGAGTGCCGGACAAAAACCTCGACGAGGAGGGGCTCGAAAGCGGCG ACTGCGGCGACGATGAAGATGAGTGTATCGGGGGCTCTGGGGATGGAATGATGAAGGTGA AGAATCAGCTCCGCTTCCTGGCAGAACTGGCCTATGACCTGGACATGGACGATGCTCCCG GAAGCAAGCAGCAGGCGAATGAGAAGGACAATGAGCTGGCCGCCTCCCACAACCTGGGGA ACGGCCACTCGGCGCCCAAGGTCCTCCCCAGCTTTGCGGTCTCTGTGCTGTGCTACTTCT TGCTGGTGCACTGACTGCTCCTCAGTGCCCCGTGGTTCTCCCTCTCTGAAGGGCACCACC TTTCTTCTTCTTTTCTATTTTTTTTTTACCTTATTTACTTCCTCCAGCCATTAAGTAGAA GACTAACCCTGCGTGACGTTTTCGAAAATCAAATGGATCTTTGCGAGGAAGGTAAATTTT AGTGGTAGCATAGATTGTCCTTTTGCAAAGAAAAAAAAAAAATCAAATTGTGCCAAATTA TTTTCCTATGTTTGGCTGCTAGCACATGGTTACCATGTTTTTTCTGTCTCTCTTTCCCTT TGCATGGATTTCTTTGGAAAAAAAATAATAAATGCTCAAATAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGAAACTTTTGCAGCGGCTGGGTAGCGGCAGGTCTCCTGCTCCTCGGGGCCACTGCCAG GCTTGCCGAGTCCTGGGACGGCTCTCGCCCCCGCCGCTACTCTCCCGCGCTCTCCTCGCT CCCCGCGAAGCAGGATGGCAGGGACCGTGCGCACCGCGTGCTTGGTGGTGGCGATGCTGC TTAGCTTGGACTGCCCCGGACAGGCGCAGCCCCCGCCGCCGCCGGACGCCACCTGTCATC AGGTCCGCTCCTTCTTCCAGAGACTGCAGCCCGGACTCAAGTGGGTGCCAGAAACCCCGG TGCCAGGATCAGATTTACAAGTATGTCTCCCCAAGGGCCCGACATGCTGCTCAAGAAAGA TGGAAGAAAAATACCAACTAACAGCGCGATTGAACATGGAACAACTGCTTCAGTCTGCAA GTATGGAGCTCAAGTTCTTAATTATTCAGAATGCTGCGGTTTTCCAAGAGGCCTTTGAAA TCGTTGTTCGCCATGCCAAGAACTACACCAACGCCATGTTCAAGAACAACTATCCGAGCC TGACCCCACAAGCTTTTGAGTTCGTGGGTGAATTTTTCACCGATGTGTCTCTCTACATCC TGGGTTCGGACATCAACGTGGATGACATGGTCAATGAACTGTTTGACAGCCTGTTCCCAG TCATCTATACCCAGCTGATGAACCCAGGCCTGCCCGAGTCGGCCTTGGACATCAATGAGT GCCTCCGAGGGGCGAGGCGTGACCTGAAAGTGTTTGGGAATTTCCCCAAGCTTATTATGA CCCAGGTTTCCAAGTCACTCCAAGTCACGAGAATCTTCCTTCAGGCCCTGAATCTCGGAA TTGAAGTGATCAACACAACAGATCACCTGAAGTTCAGTAAGGACTGCGGCCGAATGCTTA CCCGAATGTGGTATTGCTCGTACTGCCAGGGGCTGATGATGGTTAAGCCTTGTGGTGGCT ACTGCAACGTGGTCATGCAAGGCTGTATGGCGGGCGTGGTGGAGATTGACAAGTACTGGA GAGAATACATTCTGTCTCTGGAAGAACTGGTGAATGGCATGTACAGAATCTATGACATGG AGAATGTACTGCTTGGGCTCTTTTCAACCATCCACGACTCCATCCAGTACGTCCAGAAGA ATGGAGGAAAGCTGGCCACCACTATTGGCAAGTTATGCGCCCATTCTCAGCAACGTCAGT ATAGATCTGCTTATTATCCTGAAGATCTGTTTATTGACAAGAAGGTATTAAAAGTTGCTC ATGTAGAACATGAAGAAACCTTATCCAGCCGGAGAAGGGAACTAATTCAGAAGTTGAAAT CTTTCATCAGCTTCTACAGTGCTTTGCCTGGCTACATCTGCAGCCACAGCCCTGTGGCCG AAAATGACACTCTCTGCTGGAATGGACAAGAACTCGTGGAGAGGTACAGCCAAAAGGCAG CCAGGAATGGAATGAAAAACCAGTTCAACCTCCATGAGCTGAAAATGAAGGGCCCTGAGC CAGTGGTCAGTCAAATTATTGACAAACTGAAGCACATTAACCAGCTCCTGAGAACCATGT CTGTGCCAAAAGGCAGAGTGCCGGACAAAAACCTCGACGAGGAGGGGCTCGAAAGCGGCG ACTGCGGCGACGATGAAGATGAGTGTATCGGGGGCTCTGGGGATGGAATGATGAAGGTGA AGAATCAGCTCCGCTTCCTGGCAGAACTGGCCTATGACCTGGACATGGACGATGCTCCCG GAAGCAAGCAGCAGGCGAATGAGAAGGACAATGAGCTGGCCGCCTCCCACAACCTGGGGA ACGGCCACTCGGCGCCCAAGGTCCTCCCCAGCTTTGCGGTCTCTGTGCTGTGCTACTTCT TGCTGGTGCACTGACTGCTCCTCAGTGCCCCGTGGTTCTCCCTCTCTGAAGGGCACCACC TTTCTTCTTCTTTTCTATTTTTTTTTTACCTTATTTACTTCCTCCAGCCATTAAGTAGAA GACTAACCCTGCGTGACGTTTTCGAAAATCAAATGGATCTTTGCGAGGAAGGTAAATTTT AGTGGTAGCATAGATTGTCCTTTTGCAAAGAAAAAAAAAAAATCAAATTGTGCCAAATTA TTTTCCTATGTTTGGCTGCTAGCACATGGTTACCATGTTTTTTCTGTCTCTCTTTCCCTT TGCATGGATTTCTTTGGAAAAAAAATAATAAATGCTCAAATAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 572-2163, - strand, RNAz p=0.999973 | |
| 1012-1131, + strand, RNAz p=0.80146 | |
| 1875-1986, - strand, RNAz p=0.999209 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 572-2163, - strand, RNAz p=0.999973 | |
| 1012-1131, + strand, RNAz p=0.80146 | |
| 1875-1986, - strand, RNAz p=0.999209 |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 460-1162, gnl|bosTau2|chr5 (62407904-62407203) | |
| 460-1162, gnl|Hg17|chrX (132613740-132613030) | |
| 460-1162, gnl|Mm7|chrX (47521394-47520693) | |
| 1164-1298, gnl|bosTau2|chr5 (62348759-62348625) | |
| 1164-1298, gnl|canFam2|chrX (107530107-107530280) | |
| 1164-1298, gnl|dasNov1|scaffold_9632 (46913-47088) | |
| 1164-1298, gnl|echTel1|scaffold_292822 (4546-4722) | |
| 1164-1298, gnl|galGal2|chr4 (3709107-3709253) | |
| 1164-1298, gnl|hg17|chrX (132559439-132559613) | |
| 1164-1298, gnl|Hg17|chrX (132559576-132559442) | |
| 1164-1298, gnl|loxAfr1|scaffold_8271 (25007-25182) | |
| 1164-1298, gnl|mm7|chrX (47489321-47489503) | |
| 1164-1298, gnl|Mm7|chrX (47489458-47489324) | |
| 1164-1298, gnl|monDom2|scaffold_98 (1778311-1778138) | |
| 1164-1298, gnl|oryCun1|scaffold_200352 (220613-220788) | |
| 1164-1298, gnl|panTro1|chrX (137156258-137156432) | |
| 1164-1298, gnl|rheMac2|chrX (131936993-131937167) | |
| 1164-1298, gnl|rn3|chrX (139391022-139391212) | |
| 1542-1702, gnl|bosTau2|chr5 (62229256-62229096) | |
| 1542-1702, gnl|canFam2|chrX (107432798-107432971) | |
| 1542-1702, gnl|galGal2|chr4 (3682639-3682809) | |
| 1542-1702, gnl|hg17|chrX (132455985-132456158) | |
| 1542-1702, gnl|Hg17|chrX (132456150-132455990) | |
| 1542-1702, gnl|loxAfr1|scaffold_11342 (11196-11369) | |
| 1542-1702, gnl|mm7|chrX (47407086-47407259) | |
| 1542-1702, gnl|Mm7|chrX (47407251-47407091) | |
| 1542-1702, gnl|oryCun1|scaffold_200352 (118355-118528) | |
| 1542-1702, gnl|panTro1|chrX (137050579-137050752) | |
| 1542-1702, gnl|rheMac2|chrX (131834998-131835171) | |
| 1542-1702, gnl|rn3|chrX (139314321-139314494) | |
| 1875-2206, gnl|bosTau2|chr5 (62168487-62168165) | |
| 1875-2206, gnl|Hg17|chrX (132395648-132395293) | |
| 1875-2206, gnl|Mm7|chrX (47365013-47364676) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 460-1162, gnl|bosTau2|chr5 (62407904-62407203) | |
| 460-1162, gnl|Hg17|chrX (132613740-132613030) | |
| 460-1162, gnl|Mm7|chrX (47521394-47520693) | |
| 1164-1298, gnl|bosTau2|chr5 (62348759-62348625) | |
| 1164-1298, gnl|canFam2|chrX (107530107-107530280) | |
| 1164-1298, gnl|dasNov1|scaffold_9632 (46913-47088) | |
| 1164-1298, gnl|echTel1|scaffold_292822 (4546-4722) | |
| 1164-1298, gnl|galGal2|chr4 (3709107-3709253) | |
| 1164-1298, gnl|hg17|chrX (132559439-132559613) | |
| 1164-1298, gnl|Hg17|chrX (132559576-132559442) | |
| 1164-1298, gnl|loxAfr1|scaffold_8271 (25007-25182) | |
| 1164-1298, gnl|mm7|chrX (47489321-47489503) | |
| 1164-1298, gnl|Mm7|chrX (47489458-47489324) | |
| 1164-1298, gnl|monDom2|scaffold_98 (1778311-1778138) | |
| 1164-1298, gnl|oryCun1|scaffold_200352 (220613-220788) | |
| 1164-1298, gnl|panTro1|chrX (137156258-137156432) | |
| 1164-1298, gnl|rheMac2|chrX (131936993-131937167) | |
| 1164-1298, gnl|rn3|chrX (139391022-139391212) | |
| 1542-1702, gnl|bosTau2|chr5 (62229256-62229096) | |
| 1542-1702, gnl|canFam2|chrX (107432798-107432971) | |
| 1542-1702, gnl|galGal2|chr4 (3682639-3682809) | |
| 1542-1702, gnl|hg17|chrX (132455985-132456158) | |
| 1542-1702, gnl|Hg17|chrX (132456150-132455990) | |
| 1542-1702, gnl|loxAfr1|scaffold_11342 (11196-11369) | |
| 1542-1702, gnl|mm7|chrX (47407086-47407259) | |
| 1542-1702, gnl|Mm7|chrX (47407251-47407091) | |
| 1542-1702, gnl|oryCun1|scaffold_200352 (118355-118528) | |
| 1542-1702, gnl|panTro1|chrX (137050579-137050752) | |
| 1542-1702, gnl|rheMac2|chrX (131834998-131835171) | |
| 1542-1702, gnl|rn3|chrX (139314321-139314494) | |
| 1875-2206, gnl|bosTau2|chr5 (62168487-62168165) | |
| 1875-2206, gnl|Hg17|chrX (132395648-132395293) | |
| 1875-2206, gnl|Mm7|chrX (47365013-47364676) |
| Expressed library(ies): 21 entry(ies) | More info |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
| eep (1.10308) | |
| fli (1.0144) | |
| eli (0.759071) | |
| eru (0.720288) | |
| nep (0.551775) | |
| eye (0.511509) | |
| ese (0.506009) | |
| cli (0.458435) | |
| sme (0.305437) | |
| fty (0.17584) | |
| rec (0.17307) | |
| cag (0.151194) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| ste (0.135208) | |
| ute (0.132784) | |
| kid (0.129735) | |
| tra (0.123092) | |
| cly (0.120642) | |
| cty (0.10408) | |
| nbm (0.0993246) |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (1.10308) | |
| fli (1.0144) | |
| eli (0.759071) | |
| eru (0.720288) | |
| nep (0.551775) | |
| eye (0.511509) | |
| ese (0.506009) | |
| cli (0.458435) | |
| sme (0.305437) | |
| fty (0.17584) | |
| rec (0.17307) | |
| cag (0.151194) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| ste (0.135208) | |
| ute (0.132784) | |
| kid (0.129735) | |
| tra (0.123092) | |
| cly (0.120642) | |
| cty (0.10408) | |
| nbm (0.0993246) |