Ss1.1-Lng1-LNG010044C02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGTGCTGCCGGGCTCAGCCCCGTCTCCTCCTCTTGCTCCCTCGGCCGGGCGGCGGTGAC TGTGCACCGACGTCGGCGCGGGCTGCACCGCCGCGTCCGCCCGCCCGCCAGCATGGCCAC CACCGCCACCTGCACCCGCTTCACCGACGACTACCAGCTCTTCGAGGAGCTCGGCAAGGG TGCTTTCTCTGTGGTCCGCAGGTGTGTGAAGAAAACCTCCACGCAGGAATATGCAGCAAA AATCATCAATACCAAGAAGTTATCTGCCCGGGATCACCAGAAACTAGAACGTGAGGCCCG GATATGCCGACTTTTGAAACATCCAAACATTGTACGCCTCCATGACAGTATTTCTGAAGA AGGGTTTCACTACCTCGTGTTTGACCTTGTTACTGGCGGGGAGCTGTTTGAAGACATTGT GGCCAGAGAGTACTACAGTGAAGCTGATGCCAGCCACTGTATACATCAGATTCTGGAGAG TGTTAACCACATCCACCAGCATGACATCGTCCACCGGGACCTGAAGCCTGAGAACCTGCT GCTGGCGAGTAAATGCAAGGGTGCCGCCGTCAAGCTAGCTGATTTTGGCCTAGCCATCGA AGTACAGGGAGAGCAACAGGCTTGGTTTGGTTTTGCTGGCACCCCAGGTTACTTGTCCCC TGAGGTCTTGAGGAAAGATCCCTATGGAAAACCTGTGGATATCTGGGCCTGCGGGGTCAT CCTGTATATCCTCCTGGTGGGCTACCCTCCCTTTTGGGATGAGGATCAGCATAAGCTGTA TCAACAGATCAAGGCTGGAGCCTATGACTTCCCATCACCAGAGTGGGACACGGTGACTCC TGAAGCCAAGAACTTGATCAACCAGATGCTGACTATAAACCCCGCAAAGCGTATCACAGC TGACCAGGCTCTCAAACACCCATGGGTCTGCCAACGGTCCACAGTGGCATCTATGATGCA TCGTCAAGAGACTGTGGAGTGCTTGCGCAAGTTCAATGCTCGGAGAAAACTAAAGGGTGC CATCCTTACGACCATGCTTGTCTCCAGGAACTTTTCAGCTGCCAAAAGCCTATTGAACAA GAAGTCGGATGGCCGCACTGGGAATGGCAGCTCGGTGCCTGAAGGACGGAGCTCCCGGGA CAGAACAGCCCCCTCTGCAGGCATGCAGCCCCAGCCTTCTCTCTGCTCCTCAGCCATGCG AAAACAGGAGATCATTAAGATCACAGAACAGCTGATTGAGGCCATCAACAATGGGGACTT TGAGGCCTACACGAAGATTTGTGATCCAGGCCTCACCTCCTTTGAGCCTGAGGCCCTTGG TAACCTGGTGGAAGGGATGGATTTCCATAAGTTTTACTTTGAGAATCTCTTATCCAAGAA CAGCAAGCCCATCCACACCACCATCCTGAACCCGCATGTCCACGTGATCGGAGAGGACGC AGCTTGCATCGCCTATATCCGCCTCACCCAGTACATCGATGGGCAGGGTCGGCCTCGCAC CAGCCAGTCGGAGGAGACCCGGGTCTGGCACCGCCGGGATGGCAAGTGGCTCAATGTCCA CTACCACTGCTCAGGGGCCCCTGCCGCACCGCTGCAGTGAGCTCAGCCACAGGGGCATAA GGAGATCCCAGCCGGAGGTCAAACCTTCGCAGCCAGTGGCTCTGGAGGGCCTGAGCGACA GTGGCAGTTCTGTTCGTTTGAGGTTTAAAACAATTAAATTACAAAGCGGCAGCAGCCAAT GCACGCCCCTGCATGCAGCCCTCCCGCCCGCCCTTCGTGTCTGTCTCTGCTGTACCGAGG TGTTTTTTACAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGTGCTGCCGGGCTCAGCCCCGTCTCCTCCTCTTGCTCCCTCGGCCGGGCGGCGGTGAC TGTGCACCGACGTCGGCGCGGGCTGCACCGCCGCGTCCGCCCGCCCGCCAGCATGGCCAC CACCGCCACCTGCACCCGCTTCACCGACGACTACCAGCTCTTCGAGGAGCTCGGCAAGGG TGCTTTCTCTGTGGTCCGCAGGTGTGTGAAGAAAACCTCCACGCAGGAATATGCAGCAAA AATCATCAATACCAAGAAGTTATCTGCCCGGGATCACCAGAAACTAGAACGTGAGGCCCG GATATGCCGACTTTTGAAACATCCAAACATTGTACGCCTCCATGACAGTATTTCTGAAGA AGGGTTTCACTACCTCGTGTTTGACCTTGTTACTGGCGGGGAGCTGTTTGAAGACATTGT GGCCAGAGAGTACTACAGTGAAGCTGATGCCAGCCACTGTATACATCAGATTCTGGAGAG TGTTAACCACATCCACCAGCATGACATCGTCCACCGGGACCTGAAGCCTGAGAACCTGCT GCTGGCGAGTAAATGCAAGGGTGCCGCCGTCAAGCTAGCTGATTTTGGCCTAGCCATCGA AGTACAGGGAGAGCAACAGGCTTGGTTTGGTTTTGCTGGCACCCCAGGTTACTTGTCCCC TGAGGTCTTGAGGAAAGATCCCTATGGAAAACCTGTGGATATCTGGGCCTGCGGGGTCAT CCTGTATATCCTCCTGGTGGGCTACCCTCCCTTTTGGGATGAGGATCAGCATAAGCTGTA TCAACAGATCAAGGCTGGAGCCTATGACTTCCCATCACCAGAGTGGGACACGGTGACTCC TGAAGCCAAGAACTTGATCAACCAGATGCTGACTATAAACCCCGCAAAGCGTATCACAGC TGACCAGGCTCTCAAACACCCATGGGTCTGCCAACGGTCCACAGTGGCATCTATGATGCA TCGTCAAGAGACTGTGGAGTGCTTGCGCAAGTTCAATGCTCGGAGAAAACTAAAGGGTGC CATCCTTACGACCATGCTTGTCTCCAGGAACTTTTCAGCTGCCAAAAGCCTATTGAACAA GAAGTCGGATGGCCGCACTGGGAATGGCAGCTCGGTGCCTGAAGGACGGAGCTCCCGGGA CAGAACAGCCCCCTCTGCAGGCATGCAGCCCCAGCCTTCTCTCTGCTCCTCAGCCATGCG AAAACAGGAGATCATTAAGATCACAGAACAGCTGATTGAGGCCATCAACAATGGGGACTT TGAGGCCTACACGAAGATTTGTGATCCAGGCCTCACCTCCTTTGAGCCTGAGGCCCTTGG TAACCTGGTGGAAGGGATGGATTTCCATAAGTTTTACTTTGAGAATCTCTTATCCAAGAA CAGCAAGCCCATCCACACCACCATCCTGAACCCGCATGTCCACGTGATCGGAGAGGACGC AGCTTGCATCGCCTATATCCGCCTCACCCAGTACATCGATGGGCAGGGTCGGCCTCGCAC CAGCCAGTCGGAGGAGACCCGGGTCTGGCACCGCCGGGATGGCAAGTGGCTCAATGTCCA CTACCACTGCTCAGGGGCCCCTGCCGCACCGCTGCAGTGAGCTCAGCCACAGGGGCATAA GGAGATCCCAGCCGGAGGTCAAACCTTCGCAGCCAGTGGCTCTGGAGGGCCTGAGCGACA GTGGCAGTTCTGTTCGTTTGAGGTTTAAAACAATTAAATTACAAAGCGGCAGCAGCCAAT GCACGCCCCTGCATGCAGCCCTCCCGCCCGCCCTTCGTGTCTGTCTCTGCTGTACCGAGG TGTTTTTTACAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 79 entry(ies) | More info |
| Aligned organism(s): 79 entry(ies) | Help | Less info |
| 525-631, gnl|bosTau2|chr28 (22981606-22981500) | |
| 525-631, gnl|canFam2|chr4 (27485802-27485940) | |
| 525-631, gnl|danRer3|chrUn (155604365-155604497) | |
| 525-631, gnl|dasNov1|scaffold_34832 (3727-3605) | |
| 525-631, gnl|echTel1|scaffold_257699 (5091-4952) | |
| 525-631, gnl|fr1|chrUn (46990976-46991115) | |
| 525-631, gnl|galGal2|chr6 (14893833-14893715) | |
| 525-631, gnl|hg17|chr10 (75278756-75278896) | |
| 525-631, gnl|Hg17|chr10 (75278881-75278775) | |
| 525-631, gnl|loxAfr1|scaffold_9468 (47731-47592) | |
| 525-631, gnl|mm7|chr14 (18422448-18422588) | |
| 525-631, gnl|Mm7|chr14 (18422573-18422467) | |
| 525-631, gnl|monDom2|scaffold_14 (1824828-1824951) | |
| 525-631, gnl|oryCun1|scaffold_213487 (43764-43626) | |
| 525-631, gnl|panTro1|chr8 (76517502-76517642) | |
| 525-631, gnl|rheMac2|chr9 (63169632-63169492) | |
| 525-631, gnl|rn3|chr15 (3755877-3755737) | |
| 525-631, gnl|tetNig1|chr17 (10670245-10670118) | |
| 525-631, gnl|xenTro1|scaffold_151 (229628-229751) | |
| 809-931, gnl|bosTau2|chr28 (22979892-22979770) | |
| 809-931, gnl|canFam2|chr4 (27484042-27484191) | |
| 809-931, gnl|danRer3|chrUn (155596889-155597038) | |
| 809-931, gnl|dasNov1|scaffold_13696 (44213-44061) | |
| 809-931, gnl|echTel1|scaffold_257699 (7413-7261) | |
| 809-931, gnl|fr1|chrUn (46988623-46988767) | |
| 809-931, gnl|galGal2|chr6 (14898595-14898442) | |
| 809-931, gnl|hg17|chr10 (75276978-75277130) | |
| 809-931, gnl|Hg17|chr10 (75277111-75276989) | |
| 809-931, gnl|loxAfr1|scaffold_9468 (49591-49439) | |
| 809-931, gnl|mm7|chr14 (18420692-18420844) | |
| 809-931, gnl|Mm7|chr14 (18420825-18420703) | |
| 809-931, gnl|monDom2|scaffold_14 (1822608-1822759) | |
| 809-931, gnl|oryCun1|scaffold_201183 (3771-3911) | |
| 809-931, gnl|panTro1|chr8 (76515699-76515851) | |
| 809-931, gnl|rheMac2|chr9 (63171768-63171616) | |
| 809-931, gnl|rn3|chr15 (3757656-3757504) | |
| 809-931, gnl|tetNig1|chr17 (10671356-10671214) | |
| 809-931, gnl|xenTro1|scaffold_151 (226968-227110) | |
| 1093-1196, gnl|bosTau2|chr28 (22956806-22956703) | |
| 1093-1196, gnl|Hg17|chr10 (75249399-75249296) | |
| 1093-1196, gnl|Mm7|chr14 (18398038-18397935) | |
| 1266-1367, gnl|bosTau2|chr28 (22954325-22954224) | |
| 1266-1367, gnl|canFam2|chr4 (27458838-27458987) | |
| 1266-1367, gnl|danRer3|chrUn (155566731-155566854) | |
| 1266-1367, gnl|dasNov1|scaffold_3995 (21293-21159) | |
| 1266-1367, gnl|echTel1|scaffold_325083 (3776-3619) | |
| 1266-1367, gnl|fr1|chrUn (46980454-46980593) | |
| 1266-1367, gnl|galGal2|chr6 (14931112-14930961) | |
| 1266-1367, gnl|hg17|chr10 (75246764-75246919) | |
| 1266-1367, gnl|Hg17|chr10 (75246884-75246787) | |
| 1266-1367, gnl|loxAfr1|scaffold_9468 (76771-76615) | |
| 1266-1367, gnl|mm7|chr14 (18395383-18395557) | |
| 1266-1367, gnl|Mm7|chr14 (18395521-18395406) | |
| 1266-1367, gnl|monDom2|scaffold_14 (1797543-1797691) | |
| 1266-1367, gnl|oryCun1|scaffold_163251 (4225-4382) | |
| 1266-1367, gnl|panTro1|chr8 (76452229-76452384) | |
| 1266-1367, gnl|rheMac2|chr9 (63201846-63201688) | |
| 1266-1367, gnl|rn3|chr15 (3783737-3783561) | |
| 1266-1367, gnl|tetNig1|chr17 (10676917-10676813) | |
| 1266-1367, gnl|xenTro1|scaffold_151 (169911-170048) | |
| 1368-1617, gnl|bosTau2|chr28 (22952527-22952278) | |
| 1368-1617, gnl|canFam2|chr4 (27457159-27457422) | |
| 1368-1617, gnl|danRer3|chrUn (155565944-155566182) | |
| 1368-1617, gnl|dasNov1|scaffold_8314 (86200-86461) | |
| 1368-1617, gnl|echTel1|scaffold_325083 (5459-5196) | |
| 1368-1617, gnl|fr1|chrUn (46980155-46980399) | |
| 1368-1617, gnl|galGal2|chr6 (14932400-14932136) | |
| 1368-1617, gnl|hg17|chr10 (75244779-75245035) | |
| 1368-1617, gnl|Hg17|chr10 (75245011-75244762) | |
| 1368-1617, gnl|loxAfr1|scaffold_14435 (5548-5292) | |
| 1368-1617, gnl|mm7|chr14 (18393828-18394091) | |
| 1368-1617, gnl|Mm7|chr14 (18394060-18393811) | |
| 1368-1617, gnl|monDom2|scaffold_14 (1795841-1796092) | |
| 1368-1617, gnl|oryCun1|scaffold_146505 (272-540) | |
| 1368-1617, gnl|panTro1|chr8 (76450245-76450501) | |
| 1368-1617, gnl|rheMac2|chr9 (63204454-63204198) | |
| 1368-1617, gnl|rn3|chr15 (3785453-3785185) | |
| 1368-1617, gnl|tetNig1|chr17 (10677225-10676981) | |
| 1368-1617, gnl|xenTro1|scaffold_151 (169115-169358) |
| Aligned organism(s): 79 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 525-631, gnl|bosTau2|chr28 (22981606-22981500) | |
| 525-631, gnl|canFam2|chr4 (27485802-27485940) | |
| 525-631, gnl|danRer3|chrUn (155604365-155604497) | |
| 525-631, gnl|dasNov1|scaffold_34832 (3727-3605) | |
| 525-631, gnl|echTel1|scaffold_257699 (5091-4952) | |
| 525-631, gnl|fr1|chrUn (46990976-46991115) | |
| 525-631, gnl|galGal2|chr6 (14893833-14893715) | |
| 525-631, gnl|hg17|chr10 (75278756-75278896) | |
| 525-631, gnl|Hg17|chr10 (75278881-75278775) | |
| 525-631, gnl|loxAfr1|scaffold_9468 (47731-47592) | |
| 525-631, gnl|mm7|chr14 (18422448-18422588) | |
| 525-631, gnl|Mm7|chr14 (18422573-18422467) | |
| 525-631, gnl|monDom2|scaffold_14 (1824828-1824951) | |
| 525-631, gnl|oryCun1|scaffold_213487 (43764-43626) | |
| 525-631, gnl|panTro1|chr8 (76517502-76517642) | |
| 525-631, gnl|rheMac2|chr9 (63169632-63169492) | |
| 525-631, gnl|rn3|chr15 (3755877-3755737) | |
| 525-631, gnl|tetNig1|chr17 (10670245-10670118) | |
| 525-631, gnl|xenTro1|scaffold_151 (229628-229751) | |
| 809-931, gnl|bosTau2|chr28 (22979892-22979770) | |
| 809-931, gnl|canFam2|chr4 (27484042-27484191) | |
| 809-931, gnl|danRer3|chrUn (155596889-155597038) | |
| 809-931, gnl|dasNov1|scaffold_13696 (44213-44061) | |
| 809-931, gnl|echTel1|scaffold_257699 (7413-7261) | |
| 809-931, gnl|fr1|chrUn (46988623-46988767) | |
| 809-931, gnl|galGal2|chr6 (14898595-14898442) | |
| 809-931, gnl|hg17|chr10 (75276978-75277130) | |
| 809-931, gnl|Hg17|chr10 (75277111-75276989) | |
| 809-931, gnl|loxAfr1|scaffold_9468 (49591-49439) | |
| 809-931, gnl|mm7|chr14 (18420692-18420844) | |
| 809-931, gnl|Mm7|chr14 (18420825-18420703) | |
| 809-931, gnl|monDom2|scaffold_14 (1822608-1822759) | |
| 809-931, gnl|oryCun1|scaffold_201183 (3771-3911) | |
| 809-931, gnl|panTro1|chr8 (76515699-76515851) | |
| 809-931, gnl|rheMac2|chr9 (63171768-63171616) | |
| 809-931, gnl|rn3|chr15 (3757656-3757504) | |
| 809-931, gnl|tetNig1|chr17 (10671356-10671214) | |
| 809-931, gnl|xenTro1|scaffold_151 (226968-227110) | |
| 1093-1196, gnl|bosTau2|chr28 (22956806-22956703) | |
| 1093-1196, gnl|Hg17|chr10 (75249399-75249296) | |
| 1093-1196, gnl|Mm7|chr14 (18398038-18397935) | |
| 1266-1367, gnl|bosTau2|chr28 (22954325-22954224) | |
| 1266-1367, gnl|canFam2|chr4 (27458838-27458987) | |
| 1266-1367, gnl|danRer3|chrUn (155566731-155566854) | |
| 1266-1367, gnl|dasNov1|scaffold_3995 (21293-21159) | |
| 1266-1367, gnl|echTel1|scaffold_325083 (3776-3619) | |
| 1266-1367, gnl|fr1|chrUn (46980454-46980593) | |
| 1266-1367, gnl|galGal2|chr6 (14931112-14930961) | |
| 1266-1367, gnl|hg17|chr10 (75246764-75246919) | |
| 1266-1367, gnl|Hg17|chr10 (75246884-75246787) | |
| 1266-1367, gnl|loxAfr1|scaffold_9468 (76771-76615) | |
| 1266-1367, gnl|mm7|chr14 (18395383-18395557) | |
| 1266-1367, gnl|Mm7|chr14 (18395521-18395406) | |
| 1266-1367, gnl|monDom2|scaffold_14 (1797543-1797691) | |
| 1266-1367, gnl|oryCun1|scaffold_163251 (4225-4382) | |
| 1266-1367, gnl|panTro1|chr8 (76452229-76452384) | |
| 1266-1367, gnl|rheMac2|chr9 (63201846-63201688) | |
| 1266-1367, gnl|rn3|chr15 (3783737-3783561) | |
| 1266-1367, gnl|tetNig1|chr17 (10676917-10676813) | |
| 1266-1367, gnl|xenTro1|scaffold_151 (169911-170048) | |
| 1368-1617, gnl|bosTau2|chr28 (22952527-22952278) | |
| 1368-1617, gnl|canFam2|chr4 (27457159-27457422) | |
| 1368-1617, gnl|danRer3|chrUn (155565944-155566182) | |
| 1368-1617, gnl|dasNov1|scaffold_8314 (86200-86461) | |
| 1368-1617, gnl|echTel1|scaffold_325083 (5459-5196) | |
| 1368-1617, gnl|fr1|chrUn (46980155-46980399) | |
| 1368-1617, gnl|galGal2|chr6 (14932400-14932136) | |
| 1368-1617, gnl|hg17|chr10 (75244779-75245035) | |
| 1368-1617, gnl|Hg17|chr10 (75245011-75244762) | |
| 1368-1617, gnl|loxAfr1|scaffold_14435 (5548-5292) | |
| 1368-1617, gnl|mm7|chr14 (18393828-18394091) | |
| 1368-1617, gnl|Mm7|chr14 (18394060-18393811) | |
| 1368-1617, gnl|monDom2|scaffold_14 (1795841-1796092) | |
| 1368-1617, gnl|oryCun1|scaffold_146505 (272-540) | |
| 1368-1617, gnl|panTro1|chr8 (76450245-76450501) | |
| 1368-1617, gnl|rheMac2|chr9 (63204454-63204198) | |
| 1368-1617, gnl|rn3|chr15 (3785453-3785185) | |
| 1368-1617, gnl|tetNig1|chr17 (10677225-10676981) | |
| 1368-1617, gnl|xenTro1|scaffold_151 (169115-169358) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| pla (0.534688) | |
| tbr (0.308356) | |
| fce (0.271592) | |
| ece (0.229305) | |
| ldo (0.194005) | |
| ski (0.146735) | |
| ret (0.128733) | |
| eep (0.122564) | |
| cty (0.10408) | |
| jej (0.0989218) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.534688) | |
| tbr (0.308356) | |
| fce (0.271592) | |
| ece (0.229305) | |
| ldo (0.194005) | |
| ski (0.146735) | |
| ret (0.128733) | |
| eep (0.122564) | |
| cty (0.10408) | |
| jej (0.0989218) |