Ss1.1-Lng1-LNG010044C11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGTTGTTACGAGGTCGACGGAGACGCTGGAGTCTGAGTTGTCTGCGATTGTTTTTCTTC GGAGACGCGGCTGTCTGAGTTGTCTGGGGTTGTTTTGCCACGTTCGCTCGTCCTGCCGGC GCCGCCGCTGCCACCGACGCCATGGGGAAGCGACAGCACCAGAAAGACAAGATGTACATC ACCTGCGCAGAATATACTCACTTCTATGGTGGCAAGAAACCAGATATCCCACAAACAAAT TTTCGCCGCTTACCTTTTGACCACTGCAGTCTCTCTCTGCAGCCCTTCGCCTACCCGGTC TGCACTCCTGAAGGCATCGTCTTTGACTTGCTAAACATCGTTCCTTGGCTGAAGAAGTAC GGGACCAACCCCAGCAACGGAGAGAAACTGGATGGGAGGTCGCTGATCAAACTGAACTTT GCAAAGAACAGTGAAGGGAAGTACCACTGCCCGGTGCTCTTCACTGTGTTCACCAATAAC AGTCACATCGTGGCCATCAAGACCACTGGCAATGTCTACGCCCATGAGGCAGTGGAGCAG CTAAACATCAAGGCCAAGAACTTCCGAGACCTGCTGACCGACGAGCCTTTCTCCCGGCAG GATATCATCACCCTCCAGGACCCCACCAATTTGGACAAATTCAATGTCTCCAACTTCTTC CATGTGAAGAATAACATGAAAATAGTAGACCCAGATGAAGAAAAGGCCAAGCAGGACCCA TCTTATTATTTGAAAAACACAAACACGGAGACACGAGAGACGCTGCAGGAGCTCTACAAG GCATTCCAAGGGGACGAGGTGCTGGCGGCTACCATGAGGGTCCCTGAGAAGACGAAGGTG GACAAGCTCAATGCAGCCCACTACTCTACCGGGAAGGTCAGCGCCTCCTTCACCTCCACT GCAATGGTTCCCGAGACCACGCATGAAGCAGCCGCCATCGATGAGGACGTATTGCGCTAC CAGTTCGTGAAGAAGAAGGGCTATGTGCGGCTGCACACCAGCCATGGGGACCTCAACCTG GAGCTTCACTGTGACCTGACACCAAAAACCTGTGAGAATTTCATCAAGCTCTGCAAGAAG CAGTATTATGATGGCACAGTCTTCCACAGGTCCATCCGGAATTTTGTGATCCAGGGGGGT GACCCCACAGGCACAGGCACAGGCGGGGAGTCCTACTGGGGAAAGCCCTTCAAAGACGAG TTCCGGCCCAACCTCTCACACACAGGCCGAGGGATCCTCAGCATGGCCAACTCAGGGCCC AACACCAACAAGTCTCAGTTCTTCATTACCTTCCGCTCCTGCGCGTACCTGGACAAGAAG CACACCATCTTTGGGCGGGTCGTTGGAGGCTTTGACACACTGACAGCCATGGAGAATGTG GAGAGCGACCCCAAAACTGACCGCCCCAAGGAGGAGATTCGCATCGACTCCACCACAGTG TTTGTGGATCCCTACGAGGAGGCTGACGCTCAGATTGCTGAGGAGCGGAAGAAGACGCAG CTGGAGGCAGAGGCCCCAGAGAGCACAGCCAAGCCAAGCCAGCCCAAGCAGGGGAGCCAG GGTCCCCAGACGTACCGCCAGGGGGTGGGCAAGTACATCAGCCCAGCGGTCACGAAACGG GTAGCAGAGGAAGAAGCATCAACCAGTGCAGCTGCCCCAGGGGCCAAGAAGAGGCCCAGC CGAGGCTTCGGGGACTTCAGCTCATGGTAACAACGGGCCTGCAGCTTGGGATCCTGGGAT GTCCTGTCCGCTTGGTGTGTCCTTCAACCAGCAGTATCACCTGGGACCTGGTTAGAGATT CGGGGGCAGGACTCCTGACACCGATCAAGCCAGAGGACCCTGGACTAGAGCTTTGATGTT TCTTTCAAAAACTTTTTCTGCTGCCTCTTGCTTAGGCTCACTGGGTTTTCCCAGCTCATC CAGCAAGGGTCACGGGCCCTCAGCCTGGGCTCCCCTCTGCCTTGGTCTGGAGGGCAAGGC CAGCCAGCTCCCAGGCCCCAAGCTGCTGTGTCTTCACCCAGCTCCTCTCCATCTCAGGGC CCGGCCTTGTGCTCCAGCGCTGATCCACCCGCCTGCTCGGGCTTCCTGGGTGCCACGCCA GCGTTTTCCCATCTTTCTATTAAAGATCTTCATAAAGCCTGAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGTTGTTACGAGGTCGACGGAGACGCTGGAGTCTGAGTTGTCTGCGATTGTTTTTCTTC GGAGACGCGGCTGTCTGAGTTGTCTGGGGTTGTTTTGCCACGTTCGCTCGTCCTGCCGGC GCCGCCGCTGCCACCGACGCCATGGGGAAGCGACAGCACCAGAAAGACAAGATGTACATC ACCTGCGCAGAATATACTCACTTCTATGGTGGCAAGAAACCAGATATCCCACAAACAAAT TTTCGCCGCTTACCTTTTGACCACTGCAGTCTCTCTCTGCAGCCCTTCGCCTACCCGGTC TGCACTCCTGAAGGCATCGTCTTTGACTTGCTAAACATCGTTCCTTGGCTGAAGAAGTAC GGGACCAACCCCAGCAACGGAGAGAAACTGGATGGGAGGTCGCTGATCAAACTGAACTTT GCAAAGAACAGTGAAGGGAAGTACCACTGCCCGGTGCTCTTCACTGTGTTCACCAATAAC AGTCACATCGTGGCCATCAAGACCACTGGCAATGTCTACGCCCATGAGGCAGTGGAGCAG CTAAACATCAAGGCCAAGAACTTCCGAGACCTGCTGACCGACGAGCCTTTCTCCCGGCAG GATATCATCACCCTCCAGGACCCCACCAATTTGGACAAATTCAATGTCTCCAACTTCTTC CATGTGAAGAATAACATGAAAATAGTAGACCCAGATGAAGAAAAGGCCAAGCAGGACCCA TCTTATTATTTGAAAAACACAAACACGGAGACACGAGAGACGCTGCAGGAGCTCTACAAG GCATTCCAAGGGGACGAGGTGCTGGCGGCTACCATGAGGGTCCCTGAGAAGACGAAGGTG GACAAGCTCAATGCAGCCCACTACTCTACCGGGAAGGTCAGCGCCTCCTTCACCTCCACT GCAATGGTTCCCGAGACCACGCATGAAGCAGCCGCCATCGATGAGGACGTATTGCGCTAC CAGTTCGTGAAGAAGAAGGGCTATGTGCGGCTGCACACCAGCCATGGGGACCTCAACCTG GAGCTTCACTGTGACCTGACACCAAAAACCTGTGAGAATTTCATCAAGCTCTGCAAGAAG CAGTATTATGATGGCACAGTCTTCCACAGGTCCATCCGGAATTTTGTGATCCAGGGGGGT GACCCCACAGGCACAGGCACAGGCGGGGAGTCCTACTGGGGAAAGCCCTTCAAAGACGAG TTCCGGCCCAACCTCTCACACACAGGCCGAGGGATCCTCAGCATGGCCAACTCAGGGCCC AACACCAACAAGTCTCAGTTCTTCATTACCTTCCGCTCCTGCGCGTACCTGGACAAGAAG CACACCATCTTTGGGCGGGTCGTTGGAGGCTTTGACACACTGACAGCCATGGAGAATGTG GAGAGCGACCCCAAAACTGACCGCCCCAAGGAGGAGATTCGCATCGACTCCACCACAGTG TTTGTGGATCCCTACGAGGAGGCTGACGCTCAGATTGCTGAGGAGCGGAAGAAGACGCAG CTGGAGGCAGAGGCCCCAGAGAGCACAGCCAAGCCAAGCCAGCCCAAGCAGGGGAGCCAG GGTCCCCAGACGTACCGCCAGGGGGTGGGCAAGTACATCAGCCCAGCGGTCACGAAACGG GTAGCAGAGGAAGAAGCATCAACCAGTGCAGCTGCCCCAGGGGCCAAGAAGAGGCCCAGC CGAGGCTTCGGGGACTTCAGCTCATGGTAACAACGGGCCTGCAGCTTGGGATCCTGGGAT GTCCTGTCCGCTTGGTGTGTCCTTCAACCAGCAGTATCACCTGGGACCTGGTTAGAGATT CGGGGGCAGGACTCCTGACACCGATCAAGCCAGAGGACCCTGGACTAGAGCTTTGATGTT TCTTTCAAAAACTTTTTCTGCTGCCTCTTGCTTAGGCTCACTGGGTTTTCCCAGCTCATC CAGCAAGGGTCACGGGCCCTCAGCCTGGGCTCCCCTCTGCCTTGGTCTGGAGGGCAAGGC CAGCCAGCTCCCAGGCCCCAAGCTGCTGTGTCTTCACCCAGCTCCTCTCCATCTCAGGGC CCGGCCTTGTGCTCCAGCGCTGATCCACCCGCCTGCTCGGGCTTCCTGGGTGCCACGCCA GCGTTTTCCCATCTTTCTATTAAAGATCTTCATAAAGCCTGAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 930-1038, gnl|bosTau2|chr17 (45454416-45454524) | |
| 930-1038, gnl|canFam2|chr26 (34020578-34020713) | |
| 930-1038, gnl|danRer3|chr5 (3729158-3729042) | |
| 930-1038, gnl|echTel1|scaffold_59586 (355-462) | |
| 930-1038, gnl|fr1|chrUn (237464233-237464100) | |
| 930-1038, gnl|galGal2|chr15 (591236-591121) | |
| 930-1038, gnl|hg17|chr22 (20365724-20365866) | |
| 930-1038, gnl|Hg17|chr22 (20365733-20365841) | |
| 930-1038, gnl|loxAfr1|scaffold_165556 (109-6) | |
| 930-1038, gnl|mm7|chr16 (16642536-16642405) | |
| 930-1038, gnl|Mm7|chr16 (16642526-16642418) | |
| 930-1038, gnl|monDom2|scaffold_112 (3567598-3567733) | |
| 930-1038, gnl|panTro1|chr23 (20393069-20393211) | |
| 930-1038, gnl|rheMac2|chr10 (65439351-65439493) | |
| 930-1038, gnl|rn3|chr11 (85962122-85962253) | |
| 930-1038, gnl|tetNig1|chr12 (3734829-3734949) | |
| 930-1038, gnl|xenTro1|scaffold_118 (313027-312912) | |
| 1160-1280, gnl|bosTau2|chr17 (45455384-45455504) | |
| 1160-1280, gnl|Hg17|chr22 (20367572-20367692) | |
| 1160-1280, gnl|Mm7|chr16 (16641028-16640908) | |
| 1471-1614, gnl|bosTau2|chr17 (45457784-45457927) | |
| 1471-1614, gnl|canFam2|chr26 (34027975-34028142) | |
| 1471-1614, gnl|danRer3|chr5 (3696393-3696240) | |
| 1471-1614, gnl|echTel1|scaffold_59586 (878-1014) | |
| 1471-1614, gnl|fr1|chrUn (237456130-237455980) | |
| 1471-1614, gnl|hg17|chr22 (20373778-20373934) | |
| 1471-1614, gnl|Hg17|chr22 (20373777-20373914) | |
| 1471-1614, gnl|loxAfr1|scaffold_9112 (13457-13621) | |
| 1471-1614, gnl|mm7|chr16 (16639018-16638860) | |
| 1471-1614, gnl|Mm7|chr16 (16639017-16638877) | |
| 1471-1614, gnl|monDom2|scaffold_112 (3577323-3577476) | |
| 1471-1614, gnl|oryCun1|scaffold_215058 (10334-10494) | |
| 1471-1614, gnl|panTro1|chr23 (20401124-20401279) | |
| 1471-1614, gnl|rn3|chr11 (85965675-85965833) | |
| 1471-1614, gnl|tetNig1|chr12 (3741835-3741950) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 930-1038, gnl|bosTau2|chr17 (45454416-45454524) | |
| 930-1038, gnl|canFam2|chr26 (34020578-34020713) | |
| 930-1038, gnl|danRer3|chr5 (3729158-3729042) | |
| 930-1038, gnl|echTel1|scaffold_59586 (355-462) | |
| 930-1038, gnl|fr1|chrUn (237464233-237464100) | |
| 930-1038, gnl|galGal2|chr15 (591236-591121) | |
| 930-1038, gnl|hg17|chr22 (20365724-20365866) | |
| 930-1038, gnl|Hg17|chr22 (20365733-20365841) | |
| 930-1038, gnl|loxAfr1|scaffold_165556 (109-6) | |
| 930-1038, gnl|mm7|chr16 (16642536-16642405) | |
| 930-1038, gnl|Mm7|chr16 (16642526-16642418) | |
| 930-1038, gnl|monDom2|scaffold_112 (3567598-3567733) | |
| 930-1038, gnl|panTro1|chr23 (20393069-20393211) | |
| 930-1038, gnl|rheMac2|chr10 (65439351-65439493) | |
| 930-1038, gnl|rn3|chr11 (85962122-85962253) | |
| 930-1038, gnl|tetNig1|chr12 (3734829-3734949) | |
| 930-1038, gnl|xenTro1|scaffold_118 (313027-312912) | |
| 1160-1280, gnl|bosTau2|chr17 (45455384-45455504) | |
| 1160-1280, gnl|Hg17|chr22 (20367572-20367692) | |
| 1160-1280, gnl|Mm7|chr16 (16641028-16640908) | |
| 1471-1614, gnl|bosTau2|chr17 (45457784-45457927) | |
| 1471-1614, gnl|canFam2|chr26 (34027975-34028142) | |
| 1471-1614, gnl|danRer3|chr5 (3696393-3696240) | |
| 1471-1614, gnl|echTel1|scaffold_59586 (878-1014) | |
| 1471-1614, gnl|fr1|chrUn (237456130-237455980) | |
| 1471-1614, gnl|hg17|chr22 (20373778-20373934) | |
| 1471-1614, gnl|Hg17|chr22 (20373777-20373914) | |
| 1471-1614, gnl|loxAfr1|scaffold_9112 (13457-13621) | |
| 1471-1614, gnl|mm7|chr16 (16639018-16638860) | |
| 1471-1614, gnl|Mm7|chr16 (16639017-16638877) | |
| 1471-1614, gnl|monDom2|scaffold_112 (3577323-3577476) | |
| 1471-1614, gnl|oryCun1|scaffold_215058 (10334-10494) | |
| 1471-1614, gnl|panTro1|chr23 (20401124-20401279) | |
| 1471-1614, gnl|rn3|chr11 (85965675-85965833) | |
| 1471-1614, gnl|tetNig1|chr12 (3741835-3741950) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| nje (0.33184) | |
| ece (0.229305) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| cov (0.132153) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| cbl (0.114797) | |
| jca (0.11396) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.33184) | |
| ece (0.229305) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| cov (0.132153) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| cbl (0.114797) | |
| jca (0.11396) | |
| nbm (0.0993246) | |
| jej (0.0989218) |