Ss1.1-Lng1-LNG010044D01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGAATCAGTAAAGCTCCTCGACACTGGCTGTGTGGACTAACAGTCAAACCCTCCCGTGA AACAGAGAAGTTACAGAGAAGTCCACTCGTCTCACTGAGAAGAGGAAAGAACTCTCAATG AGACCCGGGGACATGGCCTCAAAGGTGCACATGCCCGAACCACAGTGCCTCATTGAGAAC ATCAATGGGCGACTGGCGGTGAACCCGAAAGCGCTGAAGCTCCTGTCTGCCATCAAGCAG CCCCTGGTGGTGGTGGCTATCGTGGGCCTGTACCGCACAGGCAAATCCTACCTGATGAAC AAGCTGGCTGGGAAGAACAAGGGCTTCTCTCTGGGCTCCACGGTGCAGTCTCACACAAAG GGCATCTGGATGTGGTGTGTGCCTCACCCCAAGAAGCGAGAACACACCCTGGTTCTGCTC GACACCGAGGGCCTGGGGGATGTTGAGAAGGGTGACAACCAGAACGACTCCTGGATCTTC GCCCTGGCAATTCTCCTGAGCAGCACCTTCGTCTACAACAGCATGGGGACCATTAACCAG CAGGCCATGGACCAGCTACACTACGTGACCGAGCTGACAGAGAGAATCAGGGCAAAGTCG GAACCTGATGAAGGGATTGAGGACTCGGCTGACTTTGTGAGCTTCTTTCCAGACTTTGTG TGGACGCTGCGGGACTTCTCCCTGGACTTGGAAACAGATGGAGAATCCATCACAGCAGAC GAGTACCTGGAGAACTCACTCAAGCTTAAGAAGGGTACCAGTCAAAAAGATAAAAATTTT AACCTGCCTCGACTCTGTATCCGGAAGTTCTTCCCCAAGAAGAAATGCTTTATCTTTGAT CGGCCCACTCAGAGGAAGAAGCTGGGCCAGCTTGAGGATCTGGGTGACGATGAGCTGGAC TCAGAATTTGTGCAACAAGCTGCAGAGTTCTGTTCCTACATCTTCTTAAATTCCAAAACG AAAACTCTTTCAGGAGGCATCAAGGTCACTGGGCCCCGTCTGGAGACCCTGGTGCTGACC TTTGTCAACACCATCAGCAGTGGGGACCTGCCCTGCATGGAGAATGCAGTCCTGGCCCTG GCTGAGATCGAGAACTCGGCCGCAGTGCAGAAGGCCATTGCCCACTATGAGCAGCAGATG GCCGAGAAGCTGCAGCTGCCCACGGAGACCCTGCAGGAGCTGCTGGACCTGCACAGGGAC GTCGAGAAGGAGGCCATTGACATCTTCATGAAGAATTCCTTCAAAGATGAAGAGAACGTA TTCCAAAAGGAATTAGCGACCAAACTAGACAAAAAGCGAGACGAATTTTGTGACCAGAAT GTTAAAGCATCATCAGAGCGTTGCTCGGCTTTAATTAAGGAAATTTTCAGTCCTCTAGAA GAAGGTGTGAAACAGGGGCTTTATTCTAAAAGTGGAGGGTATCGTCTCTACGTCGAGAAG AAAGAAGAGCTAAAGATCAAGTATCTTGAGACGCCCAGGAAGGGATTACAGGCGGAAGAG ATCCTCCAGGAATACTTGAAGTCCAAGGAGTCTGTGGGCGAAGCAATTCTACAGACAGAC CAGACTCTCTCGGAGAAAGAAAAGCAGATCGAAGTGGAACGTGTGAGAGCTGAAGCTGCA CAGGCTGCAGCCAAAATGCTGGAGGAGATGCAAATAAGGAACCAGCAGATTATGGAACAG AAAGAAAAGAGTTATCAGGAACACGTGAGACAGCTGGCTGAGAAGATGGAGAAGGACCGG GCCCAGATGCTGGAAGAGCAAGAGAGGACGATGGCTCTTAAGCTTCAGGAACAAGCCCGA CTAATTCAGGAAGGATTCCAGGAAGAGAACAGACGACTTCATAATGAAATACAAAATCTC CAGAAGAAGATGAAAAAATCAAAGAAAGAATGTTTCCTGAGCTAAAGAACTGGAGAAGAG CGCTTTCCCGGTCCCGCTTAGCCATGGTCTTGCTCAAGTAGTTTAGAATTAAGGAAAATG TTGCCAAACCTGATGATAATTACATTTCACATTGGTATTACACAAAGAACTCGCACATCA CGCAGCAGGGTACCTGAAATCATCTCGACCTTCCTCACCACACCAAAGGGGGGACAGGAT ACGCATTTCACCTCTGCACCCGCCCAGATGGCACCACGGTCTGGTTCCAATCAGGAGCTT CCTCTTCCAGATGACCGCCAGCTAGACCAGAAGACCCTGAGCACCGTCTCGGGACTGAGT CCGGCACGAGTTTGGTCAGGCCCACAACACATGCGAACATCGGGGACAACCCTTCTAGCT TCTCAGTGGAGGCAGCATCGTCTTCCACTGTTTCAAAACTGCCCAGTCTGTCAGCAGTGA TGGGATCCCGGGGCACTGGGAATGCGCGATGCTTACTGGTGAATTCGAAGCCAGAGCCAA GGCTCTTCTGGAGAGACCTAGAATCTCCACAGAATTTCCACAGGAAGATGGAAAAACCAT TAGCATGACTGGCAGCTGGGTGATAAATAAATGGGCTAGAGAAGCGAACTGTCCTTTCCT GCTCGATTCGCGCAGATTCTAACTTTACTAGGTGGGACTCTCTGGAATTTTAGGTTACAG TGGACTACACAGTGACCTGAAAACAGTTTCCCATGGCGTTTGCGGCAATTTACAGTCTGC AAAGAAGAATGTGAAATGACAACAGAAACTGTGTTCGAAAACTGAGCTAACTTAAGCGGC TAGACGGTTTAACCCTAGAGTTTAAGCTATCTTTTCCAAATTCTTCGCCATCATACATAA AAACTTATTTTTGCCCTAGAGAATATGAATTGCTTTTGACATTTTTGCCCAGTTAAATAA TGCTCTTGCTATTACTTAGTATATAGACTTTATTGCAGTTGTCAAAAGCCCTAGGTAAAT GGGAAGACGATTAAGAGTATTTTCGAGCTGGAAATAAACTGTGCTTCACTGAAAAAAAAA TTTCTGATAGCTTTCTGTTCAAGTTTTTCACCAAAAAATAAGGTTTTAGATGATCCAGCC ATGGTTGGCTAACTTTTCTGTGAAGACTGGAGAGTAACTAGTCATGGCTTGTCTCAGTTA CTCTACATGTGTATCACGTACGGTTGCCAGACACGACACATACACGAATGCGCATGGGTG TCCCAATAAACATCATTTTCAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGAATCAGTAAAGCTCCTCGACACTGGCTGTGTGGACTAACAGTCAAACCCTCCCGTGA AACAGAGAAGTTACAGAGAAGTCCACTCGTCTCACTGAGAAGAGGAAAGAACTCTCAATG AGACCCGGGGACATGGCCTCAAAGGTGCACATGCCCGAACCACAGTGCCTCATTGAGAAC ATCAATGGGCGACTGGCGGTGAACCCGAAAGCGCTGAAGCTCCTGTCTGCCATCAAGCAG CCCCTGGTGGTGGTGGCTATCGTGGGCCTGTACCGCACAGGCAAATCCTACCTGATGAAC AAGCTGGCTGGGAAGAACAAGGGCTTCTCTCTGGGCTCCACGGTGCAGTCTCACACAAAG GGCATCTGGATGTGGTGTGTGCCTCACCCCAAGAAGCGAGAACACACCCTGGTTCTGCTC GACACCGAGGGCCTGGGGGATGTTGAGAAGGGTGACAACCAGAACGACTCCTGGATCTTC GCCCTGGCAATTCTCCTGAGCAGCACCTTCGTCTACAACAGCATGGGGACCATTAACCAG CAGGCCATGGACCAGCTACACTACGTGACCGAGCTGACAGAGAGAATCAGGGCAAAGTCG GAACCTGATGAAGGGATTGAGGACTCGGCTGACTTTGTGAGCTTCTTTCCAGACTTTGTG TGGACGCTGCGGGACTTCTCCCTGGACTTGGAAACAGATGGAGAATCCATCACAGCAGAC GAGTACCTGGAGAACTCACTCAAGCTTAAGAAGGGTACCAGTCAAAAAGATAAAAATTTT AACCTGCCTCGACTCTGTATCCGGAAGTTCTTCCCCAAGAAGAAATGCTTTATCTTTGAT CGGCCCACTCAGAGGAAGAAGCTGGGCCAGCTTGAGGATCTGGGTGACGATGAGCTGGAC TCAGAATTTGTGCAACAAGCTGCAGAGTTCTGTTCCTACATCTTCTTAAATTCCAAAACG AAAACTCTTTCAGGAGGCATCAAGGTCACTGGGCCCCGTCTGGAGACCCTGGTGCTGACC TTTGTCAACACCATCAGCAGTGGGGACCTGCCCTGCATGGAGAATGCAGTCCTGGCCCTG GCTGAGATCGAGAACTCGGCCGCAGTGCAGAAGGCCATTGCCCACTATGAGCAGCAGATG GCCGAGAAGCTGCAGCTGCCCACGGAGACCCTGCAGGAGCTGCTGGACCTGCACAGGGAC GTCGAGAAGGAGGCCATTGACATCTTCATGAAGAATTCCTTCAAAGATGAAGAGAACGTA TTCCAAAAGGAATTAGCGACCAAACTAGACAAAAAGCGAGACGAATTTTGTGACCAGAAT GTTAAAGCATCATCAGAGCGTTGCTCGGCTTTAATTAAGGAAATTTTCAGTCCTCTAGAA GAAGGTGTGAAACAGGGGCTTTATTCTAAAAGTGGAGGGTATCGTCTCTACGTCGAGAAG AAAGAAGAGCTAAAGATCAAGTATCTTGAGACGCCCAGGAAGGGATTACAGGCGGAAGAG ATCCTCCAGGAATACTTGAAGTCCAAGGAGTCTGTGGGCGAAGCAATTCTACAGACAGAC CAGACTCTCTCGGAGAAAGAAAAGCAGATCGAAGTGGAACGTGTGAGAGCTGAAGCTGCA CAGGCTGCAGCCAAAATGCTGGAGGAGATGCAAATAAGGAACCAGCAGATTATGGAACAG AAAGAAAAGAGTTATCAGGAACACGTGAGACAGCTGGCTGAGAAGATGGAGAAGGACCGG GCCCAGATGCTGGAAGAGCAAGAGAGGACGATGGCTCTTAAGCTTCAGGAACAAGCCCGA CTAATTCAGGAAGGATTCCAGGAAGAGAACAGACGACTTCATAATGAAATACAAAATCTC CAGAAGAAGATGAAAAAATCAAAGAAAGAATGTTTCCTGAGCTAAAGAACTGGAGAAGAG CGCTTTCCCGGTCCCGCTTAGCCATGGTCTTGCTCAAGTAGTTTAGAATTAAGGAAAATG TTGCCAAACCTGATGATAATTACATTTCACATTGGTATTACACAAAGAACTCGCACATCA CGCAGCAGGGTACCTGAAATCATCTCGACCTTCCTCACCACACCAAAGGGGGGACAGGAT ACGCATTTCACCTCTGCACCCGCCCAGATGGCACCACGGTCTGGTTCCAATCAGGAGCTT CCTCTTCCAGATGACCGCCAGCTAGACCAGAAGACCCTGAGCACCGTCTCGGGACTGAGT CCGGCACGAGTTTGGTCAGGCCCACAACACATGCGAACATCGGGGACAACCCTTCTAGCT TCTCAGTGGAGGCAGCATCGTCTTCCACTGTTTCAAAACTGCCCAGTCTGTCAGCAGTGA TGGGATCCCGGGGCACTGGGAATGCGCGATGCTTACTGGTGAATTCGAAGCCAGAGCCAA GGCTCTTCTGGAGAGACCTAGAATCTCCACAGAATTTCCACAGGAAGATGGAAAAACCAT TAGCATGACTGGCAGCTGGGTGATAAATAAATGGGCTAGAGAAGCGAACTGTCCTTTCCT GCTCGATTCGCGCAGATTCTAACTTTACTAGGTGGGACTCTCTGGAATTTTAGGTTACAG TGGACTACACAGTGACCTGAAAACAGTTTCCCATGGCGTTTGCGGCAATTTACAGTCTGC AAAGAAGAATGTGAAATGACAACAGAAACTGTGTTCGAAAACTGAGCTAACTTAAGCGGC TAGACGGTTTAACCCTAGAGTTTAAGCTATCTTTTCCAAATTCTTCGCCATCATACATAA AAACTTATTTTTGCCCTAGAGAATATGAATTGCTTTTGACATTTTTGCCCAGTTAAATAA TGCTCTTGCTATTACTTAGTATATAGACTTTATTGCAGTTGTCAAAAGCCCTAGGTAAAT GGGAAGACGATTAAGAGTATTTTCGAGCTGGAAATAAACTGTGCTTCACTGAAAAAAAAA TTTCTGATAGCTTTCTGTTCAAGTTTTTCACCAAAAAATAAGGTTTTAGATGATCCAGCC ATGGTTGGCTAACTTTTCTGTGAAGACTGGAGAGTAACTAGTCATGGCTTGTCTCAGTTA CTCTACATGTGTATCACGTACGGTTGCCAGACACGACACATACACGAATGCGCATGGGTG TCCCAATAAACATCATTTTCAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 168-287, + strand, RNAz p=0.651157 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 168-287, + strand, RNAz p=0.651157 |
| Aligned organism(s): 45 entry(ies) | More info |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
| 129-323, gnl|bosTau2|chr3 (41062633-41062439) | |
| 129-323, gnl|canFam2|chr6 (62272623-62272469) | |
| 129-323, gnl|danRer3|chr19 (35638088-35637915) | |
| 129-323, gnl|dasNov1|scaffold_50787 (7615-7785) | |
| 129-323, gnl|echTel1|scaffold_266226 (4663-4833) | |
| 129-323, gnl|hg17|chr1 (89299474-89299644) | |
| 129-323, gnl|Hg17|chr1 (89587895-89588089) | |
| 129-323, gnl|loxAfr1|scaffold_13987 (3144-3314) | |
| 129-323, gnl|mm7|chr3 (142491283-142491113) | |
| 129-323, gnl|Mm7|chr3 (142516629-142516823) | |
| 129-323, gnl|monDom2|scaffold_87 (4766588-4766418) | |
| 129-323, gnl|oryCun1|scaffold_16046 (2051-1882) | |
| 129-323, gnl|panTro1|chr1 (88102164-88102334) | |
| 129-323, gnl|rheMac2|chr1 (91887065-91887235) | |
| 129-323, gnl|rn3|chr2 (240514477-240514307) | |
| 129-323, gnl|xenTro1|scaffold_496 (16740-16567) | |
| 561-757, gnl|bosTau2|chr3 (40072228-40072427) | |
| 561-757, gnl|canFam2|chr6 (62447852-62447618) | |
| 561-757, gnl|danRer3|chr19 (35640352-35640134) | |
| 561-757, gnl|dasNov1|scaffold_12102 (6616-6386) | |
| 561-757, gnl|echTel1|scaffold_277203 (35210-35442) | |
| 561-757, gnl|hg17|chr1 (89191781-89192016) | |
| 561-757, gnl|Hg17|chr1 (89191983-89191784) | |
| 561-757, gnl|loxAfr1|scaffold_158 (131544-131777) | |
| 561-757, gnl|mm7|chr3 (142553591-142553357) | |
| 561-757, gnl|Mm7|chr3 (142553387-142553586) | |
| 561-757, gnl|monDom2|scaffold_87 (4878703-4878469) | |
| 561-757, gnl|oryCun1|scaffold_193509 (7836-8069) | |
| 561-757, gnl|panTro1|chr1 (87994851-87995086) | |
| 561-757, gnl|rheMac2|chr1 (91763933-91764168) | |
| 561-757, gnl|rn3|chr2 (240663619-240663382) | |
| 561-757, gnl|xenTro1|scaffold_496 (63471-63236) | |
| 998-1276, gnl|bosTau2|chr3 (41052307-41052029) | |
| 998-1276, gnl|Hg17|chr1 (89599584-89599862) | |
| 998-1276, gnl|Mm7|chr3 (142524932-142525210) | |
| 1489-1594, gnl|bosTau2|chr3 (40075839-40075944) | |
| 1489-1594, gnl|Hg17|chr1 (89187202-89187096) | |
| 1624-1782, gnl|bosTau2|chr3 (41047130-41046972) | |
| 1624-1782, gnl|Hg17|chr1 (89601858-89602031) | |
| 1624-1782, gnl|Mm7|chr3 (142528742-142528915) | |
| 1784-2863, gnl|bosTau2|chr3 (40077475-40078560) | |
| 1784-2863, gnl|Hg17|chr1 (89185561-89184469) | |
| 1784-2863, gnl|Mm7|chr3 (142563013-142563925) | |
| 2888-3050, gnl|bosTau2|chr3 (40078725-40078885) | |
| 2888-3050, gnl|Hg17|chr1 (89184432-89184254) |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 129-323, gnl|bosTau2|chr3 (41062633-41062439) | |
| 129-323, gnl|canFam2|chr6 (62272623-62272469) | |
| 129-323, gnl|danRer3|chr19 (35638088-35637915) | |
| 129-323, gnl|dasNov1|scaffold_50787 (7615-7785) | |
| 129-323, gnl|echTel1|scaffold_266226 (4663-4833) | |
| 129-323, gnl|hg17|chr1 (89299474-89299644) | |
| 129-323, gnl|Hg17|chr1 (89587895-89588089) | |
| 129-323, gnl|loxAfr1|scaffold_13987 (3144-3314) | |
| 129-323, gnl|mm7|chr3 (142491283-142491113) | |
| 129-323, gnl|Mm7|chr3 (142516629-142516823) | |
| 129-323, gnl|monDom2|scaffold_87 (4766588-4766418) | |
| 129-323, gnl|oryCun1|scaffold_16046 (2051-1882) | |
| 129-323, gnl|panTro1|chr1 (88102164-88102334) | |
| 129-323, gnl|rheMac2|chr1 (91887065-91887235) | |
| 129-323, gnl|rn3|chr2 (240514477-240514307) | |
| 129-323, gnl|xenTro1|scaffold_496 (16740-16567) | |
| 561-757, gnl|bosTau2|chr3 (40072228-40072427) | |
| 561-757, gnl|canFam2|chr6 (62447852-62447618) | |
| 561-757, gnl|danRer3|chr19 (35640352-35640134) | |
| 561-757, gnl|dasNov1|scaffold_12102 (6616-6386) | |
| 561-757, gnl|echTel1|scaffold_277203 (35210-35442) | |
| 561-757, gnl|hg17|chr1 (89191781-89192016) | |
| 561-757, gnl|Hg17|chr1 (89191983-89191784) | |
| 561-757, gnl|loxAfr1|scaffold_158 (131544-131777) | |
| 561-757, gnl|mm7|chr3 (142553591-142553357) | |
| 561-757, gnl|Mm7|chr3 (142553387-142553586) | |
| 561-757, gnl|monDom2|scaffold_87 (4878703-4878469) | |
| 561-757, gnl|oryCun1|scaffold_193509 (7836-8069) | |
| 561-757, gnl|panTro1|chr1 (87994851-87995086) | |
| 561-757, gnl|rheMac2|chr1 (91763933-91764168) | |
| 561-757, gnl|rn3|chr2 (240663619-240663382) | |
| 561-757, gnl|xenTro1|scaffold_496 (63471-63236) | |
| 998-1276, gnl|bosTau2|chr3 (41052307-41052029) | |
| 998-1276, gnl|Hg17|chr1 (89599584-89599862) | |
| 998-1276, gnl|Mm7|chr3 (142524932-142525210) | |
| 1489-1594, gnl|bosTau2|chr3 (40075839-40075944) | |
| 1489-1594, gnl|Hg17|chr1 (89187202-89187096) | |
| 1624-1782, gnl|bosTau2|chr3 (41047130-41046972) | |
| 1624-1782, gnl|Hg17|chr1 (89601858-89602031) | |
| 1624-1782, gnl|Mm7|chr3 (142528742-142528915) | |
| 1784-2863, gnl|bosTau2|chr3 (40077475-40078560) | |
| 1784-2863, gnl|Hg17|chr1 (89185561-89184469) | |
| 1784-2863, gnl|Mm7|chr3 (142563013-142563925) | |
| 2888-3050, gnl|bosTau2|chr3 (40078725-40078885) | |
| 2888-3050, gnl|Hg17|chr1 (89184432-89184254) |
| Expressed library(ies): 27 entry(ies) | More info |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
| sin (1.57453) | |
| jej (0.890296) | |
| ill (0.877963) | |
| spl (0.715922) | |
| duo (0.691204) | |
| csp (0.483559) | |
| col (0.390016) | |
| sto (0.359648) | |
| rec (0.346141) | |
| cut (0.339847) | |
| cje (0.330469) | |
| clu (0.239292) | |
| spc (0.226732) | |
| cty (0.20816) | |
| nje (0.16592) | |
| nco (0.161734) | |
| mga (0.160205) | |
| cag (0.151194) | |
| lin (0.145603) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| cst (0.140036) | |
| che (0.136314) | |
| ste (0.135208) | |
| kid (0.129735) | |
| ova (0.129132) | |
| pgl (0.118483) |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sin (1.57453) | |
| jej (0.890296) | |
| ill (0.877963) | |
| spl (0.715922) | |
| duo (0.691204) | |
| csp (0.483559) | |
| col (0.390016) | |
| sto (0.359648) | |
| rec (0.346141) | |
| cut (0.339847) | |
| cje (0.330469) | |
| clu (0.239292) | |
| spc (0.226732) | |
| cty (0.20816) | |
| nje (0.16592) | |
| nco (0.161734) | |
| mga (0.160205) | |
| cag (0.151194) | |
| lin (0.145603) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| cst (0.140036) | |
| che (0.136314) | |
| ste (0.135208) | |
| kid (0.129735) | |
| ova (0.129132) | |
| pgl (0.118483) |