Ss1.1-Lng1-LNG010044F11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGCCATCTTGTCTTGTTCGTGAAGAAGTAGAAGCATCGAAAGGGTTGGAGAGGTATTAC GCGAACGGTGGCAACAACAGTGTTCCGGAACCAGAGTGGGGTCTAAGTAATCTCGCTGCT ATGCTTCCAAGCTGTAGTTCTGAATCAACCTAAATTTTAAAGAGAAGGCGAACCTCTGAG ACTGAAAATCAAATATATTTTAAAAGTCAAGATGTGGGATCAAGGAGGACAGCCTTGGCA GCAATGGCCCTTGAACCAACAACAATGGATGCAGTCATTCCAGCACCAGCAGGATCCAAG CCAGATTGACTGGGCTGCATTGGCTCAAGCTTGGATTGCCCAAAGAGAAGCTTCAGGACA GCAAAACATGGTAGAACAACCACCAGGAATGATGCCAAATGGACAAGATATGTCTACAAT GGAATCTGGTCCAAATAATCATGGAAATTTTCAAGGGGATTCAAACTTTAACAGAATGTG GCAACCAGAATGGGGAATGCATCAGCAACCCCCACACCCCCCTCCAGATCAGCCATGGAT GCCACCAACACCAGGCCCAATGGACATTGTTCCTCCTTCCGAAGACAGCAACAGTCAGGA CAGTGGGGAATTTGCCCCTGACAACAGGCATATATTTAACCAGAACAATCACAACTTTGG TGGACCACCCGATAATTTTGCAGTGGGGCCAGTGAACCAGTTTGACTATCAGCATGGGGC TGCTTTTGGTCCACCGCAAGGTGGATTTCATCCTCCTTATTGGCAACCAGGACCTCCAGG ACCTCCAGCACCTCCCCAGAATCGAAGAGAAAGGCCATCATCTTTCAGGGATCGGCAGCG TTCACCTATTGCACTTCCTGTGAAGCAGGAGCCTCCACAAATTGATGCAGTAAAACGCAG GACTCTTCCAGCTTGGATTCGAGAAGGTCTTGAAAAAATGGAACGTGAAAAGCAGAAGAA ATTGGAGAAAGAAAGAATGGAACAACAACGTTCACA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGCCATCTTGTCTTGTTCGTGAAGAAGTAGAAGCATCGAAAGGGTTGGAGAGGTATTAC GCGAACGGTGGCAACAACAGTGTTCCGGAACCAGAGTGGGGTCTAAGTAATCTCGCTGCT ATGCTTCCAAGCTGTAGTTCTGAATCAACCTAAATTTTAAAGAGAAGGCGAACCTCTGAG ACTGAAAATCAAATATATTTTAAAAGTCAAGATGTGGGATCAAGGAGGACAGCCTTGGCA GCAATGGCCCTTGAACCAACAACAATGGATGCAGTCATTCCAGCACCAGCAGGATCCAAG CCAGATTGACTGGGCTGCATTGGCTCAAGCTTGGATTGCCCAAAGAGAAGCTTCAGGACA GCAAAACATGGTAGAACAACCACCAGGAATGATGCCAAATGGACAAGATATGTCTACAAT GGAATCTGGTCCAAATAATCATGGAAATTTTCAAGGGGATTCAAACTTTAACAGAATGTG GCAACCAGAATGGGGAATGCATCAGCAACCCCCACACCCCCCTCCAGATCAGCCATGGAT GCCACCAACACCAGGCCCAATGGACATTGTTCCTCCTTCCGAAGACAGCAACAGTCAGGA CAGTGGGGAATTTGCCCCTGACAACAGGCATATATTTAACCAGAACAATCACAACTTTGG TGGACCACCCGATAATTTTGCAGTGGGGCCAGTGAACCAGTTTGACTATCAGCATGGGGC TGCTTTTGGTCCACCGCAAGGTGGATTTCATCCTCCTTATTGGCAACCAGGACCTCCAGG ACCTCCAGCACCTCCCCAGAATCGAAGAGAAAGGCCATCATCTTTCAGGGATCGGCAGCG TTCACCTATTGCACTTCCTGTGAAGCAGGAGCCTCCACAAATTGATGCAGTAAAACGCAG GACTCTTCCAGCTTGGATTCGAGAAGGTCTTGAAAAAATGGAACGTGAAAAGCAGAAGAA ATTGGAGAAAGAAAGAATGGAACAACAACGTTCACA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 487-605, - strand, RNAz p=0.580564 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 487-605, - strand, RNAz p=0.580564 |
| Aligned organism(s): 52 entry(ies) | More info |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
| 179-300, gnl|bosTau2|chr9 (33703989-33703868) | |
| 179-300, gnl|canFam2|chr12 (60623663-60623794) | |
| 179-300, gnl|dasNov1|scaffold_16083 (13997-14129) | |
| 179-300, gnl|echTel1|scaffold_309828 (86934-86801) | |
| 179-300, gnl|fr1|chrUn (260846446-260846567) | |
| 179-300, gnl|galGal2|chr3 (69856793-69856685) | |
| 179-300, gnl|hg17|chr6 (99969145-99969278) | |
| 179-300, gnl|Hg17|chr6 (99969289-99969168) | |
| 179-300, gnl|loxAfr1|scaffold_61198 (9155-9020) | |
| 179-300, gnl|mm7|chr4 (21858126-21858011) | |
| 179-300, gnl|Mm7|chr4 (21857998-21858103) | |
| 179-300, gnl|monDom2|scaffold_0 (124474831-124474699) | |
| 179-300, gnl|oryCun1|scaffold_213419 (19892-19759) | |
| 179-300, gnl|panTro1|chr5 (101955367-101955500) | |
| 179-300, gnl|rheMac2|chr4 (95356937-95357070) | |
| 179-300, gnl|rn3|chr5 (36605411-36605295) | |
| 179-300, gnl|tetNig1|chr8 (1398561-1398682) | |
| 179-300, gnl|xenTro1|scaffold_164 (1933087-1933216) | |
| 487-712, gnl|bosTau2|chr9 (33700676-33700451) | |
| 487-712, gnl|canFam2|chr12 (60620286-60620541) | |
| 487-712, gnl|dasNov1|scaffold_16083 (10845-11100) | |
| 487-712, gnl|echTel1|scaffold_258540 (1863-1608) | |
| 487-712, gnl|fr1|chrUn (260845761-260846001) | |
| 487-712, gnl|galGal2|chr3 (69860069-69859829) | |
| 487-712, gnl|hg17|chr6 (99965337-99965592) | |
| 487-712, gnl|Hg17|chr6 (99965563-99965338) | |
| 487-712, gnl|mm7|chr4 (21862967-21862712) | |
| 487-712, gnl|Mm7|chr4 (21862739-21862964) | |
| 487-712, gnl|monDom2|scaffold_0 (124484011-124483756) | |
| 487-712, gnl|oryCun1|scaffold_213419 (24245-23990) | |
| 487-712, gnl|panTro1|chr5 (101951571-101951826) | |
| 487-712, gnl|rheMac2|chr4 (95353102-95353357) | |
| 487-712, gnl|rn3|chr5 (36609626-36609371) | |
| 487-712, gnl|tetNig1|chr8 (1397817-1398086) | |
| 487-712, gnl|xenTro1|scaffold_164 (1931605-1931831) | |
| 879-996, gnl|bosTau2|chr9 (33697726-33697609) | |
| 879-996, gnl|canFam2|chr12 (60617088-60617288) | |
| 879-996, gnl|dasNov1|scaffold_16083 (7620-7820) | |
| 879-996, gnl|echTel1|scaffold_258540 (6113-5913) | |
| 879-996, gnl|fr1|chrUn (260844922-260845122) | |
| 879-996, gnl|galGal2|chr3 (69862407-69862207) | |
| 879-996, gnl|hg17|chr6 (99962672-99962872) | |
| 879-996, gnl|Hg17|chr6 (99962874-99962757) | |
| 879-996, gnl|mm7|chr4 (21865842-21865642) | |
| 879-996, gnl|Mm7|chr4 (21865638-21865755) | |
| 879-996, gnl|monDom2|scaffold_0 (124489368-124489168) | |
| 879-996, gnl|oryCun1|scaffold_213419 (28341-28142) | |
| 879-996, gnl|panTro1|chr5 (101948916-101949116) | |
| 879-996, gnl|rheMac2|chr4 (95350426-95350626) | |
| 879-996, gnl|rn3|chr5 (36612765-36612565) | |
| 879-996, gnl|tetNig1|chr8 (1396978-1397178) | |
| 879-996, gnl|xenTro1|scaffold_164 (1928088-1928286) |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 179-300, gnl|bosTau2|chr9 (33703989-33703868) | |
| 179-300, gnl|canFam2|chr12 (60623663-60623794) | |
| 179-300, gnl|dasNov1|scaffold_16083 (13997-14129) | |
| 179-300, gnl|echTel1|scaffold_309828 (86934-86801) | |
| 179-300, gnl|fr1|chrUn (260846446-260846567) | |
| 179-300, gnl|galGal2|chr3 (69856793-69856685) | |
| 179-300, gnl|hg17|chr6 (99969145-99969278) | |
| 179-300, gnl|Hg17|chr6 (99969289-99969168) | |
| 179-300, gnl|loxAfr1|scaffold_61198 (9155-9020) | |
| 179-300, gnl|mm7|chr4 (21858126-21858011) | |
| 179-300, gnl|Mm7|chr4 (21857998-21858103) | |
| 179-300, gnl|monDom2|scaffold_0 (124474831-124474699) | |
| 179-300, gnl|oryCun1|scaffold_213419 (19892-19759) | |
| 179-300, gnl|panTro1|chr5 (101955367-101955500) | |
| 179-300, gnl|rheMac2|chr4 (95356937-95357070) | |
| 179-300, gnl|rn3|chr5 (36605411-36605295) | |
| 179-300, gnl|tetNig1|chr8 (1398561-1398682) | |
| 179-300, gnl|xenTro1|scaffold_164 (1933087-1933216) | |
| 487-712, gnl|bosTau2|chr9 (33700676-33700451) | |
| 487-712, gnl|canFam2|chr12 (60620286-60620541) | |
| 487-712, gnl|dasNov1|scaffold_16083 (10845-11100) | |
| 487-712, gnl|echTel1|scaffold_258540 (1863-1608) | |
| 487-712, gnl|fr1|chrUn (260845761-260846001) | |
| 487-712, gnl|galGal2|chr3 (69860069-69859829) | |
| 487-712, gnl|hg17|chr6 (99965337-99965592) | |
| 487-712, gnl|Hg17|chr6 (99965563-99965338) | |
| 487-712, gnl|mm7|chr4 (21862967-21862712) | |
| 487-712, gnl|Mm7|chr4 (21862739-21862964) | |
| 487-712, gnl|monDom2|scaffold_0 (124484011-124483756) | |
| 487-712, gnl|oryCun1|scaffold_213419 (24245-23990) | |
| 487-712, gnl|panTro1|chr5 (101951571-101951826) | |
| 487-712, gnl|rheMac2|chr4 (95353102-95353357) | |
| 487-712, gnl|rn3|chr5 (36609626-36609371) | |
| 487-712, gnl|tetNig1|chr8 (1397817-1398086) | |
| 487-712, gnl|xenTro1|scaffold_164 (1931605-1931831) | |
| 879-996, gnl|bosTau2|chr9 (33697726-33697609) | |
| 879-996, gnl|canFam2|chr12 (60617088-60617288) | |
| 879-996, gnl|dasNov1|scaffold_16083 (7620-7820) | |
| 879-996, gnl|echTel1|scaffold_258540 (6113-5913) | |
| 879-996, gnl|fr1|chrUn (260844922-260845122) | |
| 879-996, gnl|galGal2|chr3 (69862407-69862207) | |
| 879-996, gnl|hg17|chr6 (99962672-99962872) | |
| 879-996, gnl|Hg17|chr6 (99962874-99962757) | |
| 879-996, gnl|mm7|chr4 (21865842-21865642) | |
| 879-996, gnl|Mm7|chr4 (21865638-21865755) | |
| 879-996, gnl|monDom2|scaffold_0 (124489368-124489168) | |
| 879-996, gnl|oryCun1|scaffold_213419 (28341-28142) | |
| 879-996, gnl|panTro1|chr5 (101948916-101949116) | |
| 879-996, gnl|rheMac2|chr4 (95350426-95350626) | |
| 879-996, gnl|rn3|chr5 (36612765-36612565) | |
| 879-996, gnl|tetNig1|chr8 (1396978-1397178) | |
| 879-996, gnl|xenTro1|scaffold_164 (1928088-1928286) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| cte (0.58548) | |
| ova (0.258264) | |
| med (0.232504) | |
| aor (0.195274) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| eli (0.151814) | |
| isp (0.150376) | |
| thg (0.126791) | |
| bla (0.124347) | |
| tra (0.123092) | |
| pgl (0.118483) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (0.58548) | |
| ova (0.258264) | |
| med (0.232504) | |
| aor (0.195274) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| eli (0.151814) | |
| isp (0.150376) | |
| thg (0.126791) | |
| bla (0.124347) | |
| tra (0.123092) | |
| pgl (0.118483) |