Ss1.1-Lng1-LNG010044F12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCAGTACCGGCAAGAGCTGTAGCCAGATCATCAGACTGCGGCCCAGACAAGGTCCCCTG GCCAGGATGTCGGGCCTGGTGTTGGGACAGCGGGATGAGTCTGCAGGGCACCGGCTCAGC CAGGAGGAGATCCTGGGGAGCACCCGTCTGGTGAGCCAAGGTCTGGAGGCTCTACACAGT GAGCACCAGGCAGTGCTGCAAAGCCTCTCGCATACCATCGAGTGTCTGCAGCAGGGAGGC CATGAAGAAGGGCTGGTGCACGAGAAGGCCCGGCAGCTGCGCCGATCCATGGAAAACATC GAGCTGGGGCTGAGTGAGGCCCAGGTGATGCTGGCCCTGGCCAACCACCTGAGCACAGTG GAGTCAGAGAAACAGAAGCTGCGGGCTCAGGTCCGGCGGCTGTGTCAGGAGAACCAGTGG CTCCGGGACGAGCTGGCGGGTACCCAGCAGCGACTCCAGCGCAGCGAACAAGCCGTGGCT CAGCTGGAGGAGGAAAAGAAGCACCTAGAGTTCCTGGGACAGCTGCGACAGTATGACGAA GATGGGCACACTGCGGAGGAGAAGGAAGGCGATGCCTCCAAGGATTCCCTGGATGACCTC TTCCGAAATGAAGAGGAAGAGGACCCCAGCAATGGCTTGGCCCGTGGCCAGGGCGCCCAG CATAACGGCTATGAGATCCCAGCGAGGCTGCGGACACTGCACAATCTGGTGATACAGTAT GCCGCCCAGGGCCGCTATGAGGTAGCCGTGCCACTCTGCAAGCAGGCACTGGAGGACCTG GAACGCACGTCCGGCCGAGGCCAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCAGTACCGGCAAGAGCTGTAGCCAGATCATCAGACTGCGGCCCAGACAAGGTCCCCTG GCCAGGATGTCGGGCCTGGTGTTGGGACAGCGGGATGAGTCTGCAGGGCACCGGCTCAGC CAGGAGGAGATCCTGGGGAGCACCCGTCTGGTGAGCCAAGGTCTGGAGGCTCTACACAGT GAGCACCAGGCAGTGCTGCAAAGCCTCTCGCATACCATCGAGTGTCTGCAGCAGGGAGGC CATGAAGAAGGGCTGGTGCACGAGAAGGCCCGGCAGCTGCGCCGATCCATGGAAAACATC GAGCTGGGGCTGAGTGAGGCCCAGGTGATGCTGGCCCTGGCCAACCACCTGAGCACAGTG GAGTCAGAGAAACAGAAGCTGCGGGCTCAGGTCCGGCGGCTGTGTCAGGAGAACCAGTGG CTCCGGGACGAGCTGGCGGGTACCCAGCAGCGACTCCAGCGCAGCGAACAAGCCGTGGCT CAGCTGGAGGAGGAAAAGAAGCACCTAGAGTTCCTGGGACAGCTGCGACAGTATGACGAA GATGGGCACACTGCGGAGGAGAAGGAAGGCGATGCCTCCAAGGATTCCCTGGATGACCTC TTCCGAAATGAAGAGGAAGAGGACCCCAGCAATGGCTTGGCCCGTGGCCAGGGCGCCCAG CATAACGGCTATGAGATCCCAGCGAGGCTGCGGACACTGCACAATCTGGTGATACAGTAT GCCGCCCAGGGCCGCTATGAGGTAGCCGTGCCACTCTGCAAGCAGGCACTGGAGGACCTG GAACGCACGTCCGGCCGAGGCCAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 401-520, - strand, RNAz p=0.924791 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 401-520, - strand, RNAz p=0.924791 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 318-542, gnl|bosTau2|chr21 (48091698-48091922) | |
| 318-542, gnl|Hg17|chr14 (103193629-103193853) | |
| 318-542, gnl|Mm7|chr12 (109298942-109299166) | |
| 322-537, gnl|bosTau2|chr18 (38521062-38520847) | |
| 322-537, gnl|Hg17|chr19 (50541639-50541854) | |
| 322-537, gnl|Mm7|chr7 (17080569-17080354) | |
| 646-804, gnl|bosTau2|chr18 (38520028-38519869) | |
| 646-804, gnl|canFam2|chr1 (113084464-113084344) | |
| 646-804, gnl|danRer3|chr16 (16384024-16384143) | |
| 646-804, gnl|dasNov1|scaffold_4312 (10937-11053) | |
| 646-804, gnl|echTel1|scaffold_311398 (49550-49662) | |
| 646-804, gnl|fr1|chrUn (89441916-89441796) | |
| 646-804, gnl|galGal2|chr5 (47240696-47240815) | |
| 646-804, gnl|hg17|chr19 (50543056-50543176) | |
| 646-804, gnl|Hg17|chr19 (50543055-50543214) | |
| 646-804, gnl|loxAfr1|scaffold_27717 (10221-10340) | |
| 646-804, gnl|mm7|chr7 (17079450-17079330) | |
| 646-804, gnl|Mm7|chr7 (17079449-17079290) | |
| 646-804, gnl|monDom2|scaffold_107 (2684052-2683933) | |
| 646-804, gnl|oryCun1|scaffold_123083 (4711-4591) | |
| 646-804, gnl|panTro1|chr20 (47726459-47726579) | |
| 646-804, gnl|rheMac2|chr19 (51781198-51781318) | |
| 646-804, gnl|rn3|chr1 (78992752-78992632) | |
| 646-804, gnl|tetNig1|chr16 (6603195-6603309) | |
| 646-804, gnl|xenTro1|scaffold_127 (1667156-1667275) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 318-542, gnl|bosTau2|chr21 (48091698-48091922) | |
| 318-542, gnl|Hg17|chr14 (103193629-103193853) | |
| 318-542, gnl|Mm7|chr12 (109298942-109299166) | |
| 322-537, gnl|bosTau2|chr18 (38521062-38520847) | |
| 322-537, gnl|Hg17|chr19 (50541639-50541854) | |
| 322-537, gnl|Mm7|chr7 (17080569-17080354) | |
| 646-804, gnl|bosTau2|chr18 (38520028-38519869) | |
| 646-804, gnl|canFam2|chr1 (113084464-113084344) | |
| 646-804, gnl|danRer3|chr16 (16384024-16384143) | |
| 646-804, gnl|dasNov1|scaffold_4312 (10937-11053) | |
| 646-804, gnl|echTel1|scaffold_311398 (49550-49662) | |
| 646-804, gnl|fr1|chrUn (89441916-89441796) | |
| 646-804, gnl|galGal2|chr5 (47240696-47240815) | |
| 646-804, gnl|hg17|chr19 (50543056-50543176) | |
| 646-804, gnl|Hg17|chr19 (50543055-50543214) | |
| 646-804, gnl|loxAfr1|scaffold_27717 (10221-10340) | |
| 646-804, gnl|mm7|chr7 (17079450-17079330) | |
| 646-804, gnl|Mm7|chr7 (17079449-17079290) | |
| 646-804, gnl|monDom2|scaffold_107 (2684052-2683933) | |
| 646-804, gnl|oryCun1|scaffold_123083 (4711-4591) | |
| 646-804, gnl|panTro1|chr20 (47726459-47726579) | |
| 646-804, gnl|rheMac2|chr19 (51781198-51781318) | |
| 646-804, gnl|rn3|chr1 (78992752-78992632) | |
| 646-804, gnl|tetNig1|chr16 (6603195-6603309) | |
| 646-804, gnl|xenTro1|scaffold_127 (1667156-1667275) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.122564) | |
| cty (0.10408) |