Ss1.1-Lng1-LNG010045A03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCGATGTTGAATAACCCCTGTAACTTGATTGCTAATTTGGTGGTCTACCCTTTATACAA CGGATGAGGGGGATTCTTAAGTAGTAGTGTGGTGACCACCAACTCCTTAGTTCTCGCTGC TTCACCCTCACTGACAGCTGCCGTCTGCCTTCCTTCTAATAAACGAGGCGACGCAGAGAT GAGAAGAAAAAGTGGGAGAAATAACTGAGCGATGGAAAACTGAAGGCAGCCCCCAGGCGG CCGCCCTTGCAGACCGCACCCTCCCTGCACGCTAAGAACCACGCCGGAACCCGTGGGCGG AAACTGGAAGACGGGGTCACAGTGCGTGTTGGTGAGTCCCGTGGATGTGAAAGGCCGGGC TGCGAGCGGGACCCGCCGTGAAACGCCCTGAGAGAAGATGACTGTGTTCTTTAAAACACT TCGGAATCACTGGAAGAAAACGACAGCTGGGGTCTGCCTGCTGACCTGGGGAGGCCACTG GCTCTACGGGAAACACTGGTAACGAGCTGGCAGCCCAGCAGCCTGTCAAGAAGCTCAGGT GTTTGGCAATCAACTCATTCCTCCCAATGCACAAGTGAAGAAGGCAACCGTCTTTCTCAA CCCCGCTGCTTGCAAAGGCAAAGCCAGGACTCTATTTGAAAAAAATGCTGCCCCGATTTT ACACTTATCTGGCATGGATGTGACTGTTGTTAAGACAGACTATGAGGGCCAAGCCAAGAA ACTCCTGGAACTGTTGGAAAACACAGATGTGATCATTGTTGCTGGAGGAGATGGGACATT GCAAGAGGTTATTACTGGAGTTCTTCGAAGAGCAGATGAGGCAACCTTCAGTAAGATTCC CATTGGATTTATCCCACTGGGCCAGACCAGTACTTTGAGTCAGACACTCTTTGCCGAAAG TGGAAACAAAGTCCAACATATTATAGATGCTACACTTGCCATTGTGAAAGGAGAGACAGT TCCACTGGATGTCTTACAGATCAAGGGTGAAAAGGAACAGCCTGTGTTTGCACTGACCGG CCTCCGATGGGGATCTTTCCGAGATGCTGGTGTCACAGTTAGCAGGTACTGGTATCTCGG GCCTCTAAAAACCAAGGCAGCCCACTTTTTCAGCACTCTTAAGGAGTGGCCTCAGACTCA TCAAGCCTCTATCTCGTACACGGGACCTGCAGAGAGACCTCCCAGTGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCGATGTTGAATAACCCCTGTAACTTGATTGCTAATTTGGTGGTCTACCCTTTATACAA CGGATGAGGGGGATTCTTAAGTAGTAGTGTGGTGACCACCAACTCCTTAGTTCTCGCTGC TTCACCCTCACTGACAGCTGCCGTCTGCCTTCCTTCTAATAAACGAGGCGACGCAGAGAT GAGAAGAAAAAGTGGGAGAAATAACTGAGCGATGGAAAACTGAAGGCAGCCCCCAGGCGG CCGCCCTTGCAGACCGCACCCTCCCTGCACGCTAAGAACCACGCCGGAACCCGTGGGCGG AAACTGGAAGACGGGGTCACAGTGCGTGTTGGTGAGTCCCGTGGATGTGAAAGGCCGGGC TGCGAGCGGGACCCGCCGTGAAACGCCCTGAGAGAAGATGACTGTGTTCTTTAAAACACT TCGGAATCACTGGAAGAAAACGACAGCTGGGGTCTGCCTGCTGACCTGGGGAGGCCACTG GCTCTACGGGAAACACTGGTAACGAGCTGGCAGCCCAGCAGCCTGTCAAGAAGCTCAGGT GTTTGGCAATCAACTCATTCCTCCCAATGCACAAGTGAAGAAGGCAACCGTCTTTCTCAA CCCCGCTGCTTGCAAAGGCAAAGCCAGGACTCTATTTGAAAAAAATGCTGCCCCGATTTT ACACTTATCTGGCATGGATGTGACTGTTGTTAAGACAGACTATGAGGGCCAAGCCAAGAA ACTCCTGGAACTGTTGGAAAACACAGATGTGATCATTGTTGCTGGAGGAGATGGGACATT GCAAGAGGTTATTACTGGAGTTCTTCGAAGAGCAGATGAGGCAACCTTCAGTAAGATTCC CATTGGATTTATCCCACTGGGCCAGACCAGTACTTTGAGTCAGACACTCTTTGCCGAAAG TGGAAACAAAGTCCAACATATTATAGATGCTACACTTGCCATTGTGAAAGGAGAGACAGT TCCACTGGATGTCTTACAGATCAAGGGTGAAAAGGAACAGCCTGTGTTTGCACTGACCGG CCTCCGATGGGGATCTTTCCGAGATGCTGGTGTCACAGTTAGCAGGTACTGGTATCTCGG GCCTCTAAAAACCAAGGCAGCCCACTTTTTCAGCACTCTTAAGGAGTGGCCTCAGACTCA TCAAGCCTCTATCTCGTACACGGGACCTGCAGAGAGACCTCCCAGTGG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 386-516, gnl|bosTau2|chr4 (59068552-59068682) | |
| 386-516, gnl|canFam2|chr16 (10599515-10599183) | |
| 386-516, gnl|canFam2|chr16 (10599193-10599292) | |
| 386-516, gnl|dasNov1|scaffold_147617 (39070-39435) | |
| 386-516, gnl|dasNov1|scaffold_147617 (39425-39326) | |
| 386-516, gnl|echTel1|scaffold_104323 (402-718) | |
| 386-516, gnl|echTel1|scaffold_104323 (709-610) | |
| 386-516, gnl|fr1|chrUn (175911868-175911964) | |
| 386-516, gnl|hg17|chr7 (140708206-140708562) | |
| 386-516, gnl|Hg17|chr7 (140708442-140708566) | |
| 386-516, gnl|hg17|chrX (130990816-130990915) | |
| 386-516, gnl|loxAfr1|scaffold_83430 (4688-5008) | |
| 386-516, gnl|loxAfr1|scaffold_83430 (4998-4899) | |
| 386-516, gnl|mm7|chr13 (86652697-86652795) | |
| 386-516, gnl|mm7|chr6 (40259311-40259634) | |
| 386-516, gnl|Mm7|chr6 (40259512-40259641) | |
| 386-516, gnl|monDom2|scaffold_1 (20334231-20334329) | |
| 386-516, gnl|monDom2|scaffold_22 (429960-429611) | |
| 386-516, gnl|oryCun1|scaffold_193805 (4404-4104) | |
| 386-516, gnl|oryCun1|scaffold_193805 (4114-4213) | |
| 386-516, gnl|panTro1|chr6 (143464563-143464919) | |
| 386-516, gnl|panTro1|chrX (135266921-135267020) | |
| 386-516, gnl|rheMac2|chr3 (179032830-179033177) | |
| 386-516, gnl|rheMac2|chrX (130356390-130356489) | |
| 386-516, gnl|rn3|chr4 (68160030-68160349) | |
| 386-516, gnl|rn3|chr4 (68160340-68160241) | |
| 386-516, gnl|tetNig1|chr13 (1679113-1679201) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 386-516, gnl|bosTau2|chr4 (59068552-59068682) | |
| 386-516, gnl|canFam2|chr16 (10599515-10599183) | |
| 386-516, gnl|canFam2|chr16 (10599193-10599292) | |
| 386-516, gnl|dasNov1|scaffold_147617 (39070-39435) | |
| 386-516, gnl|dasNov1|scaffold_147617 (39425-39326) | |
| 386-516, gnl|echTel1|scaffold_104323 (402-718) | |
| 386-516, gnl|echTel1|scaffold_104323 (709-610) | |
| 386-516, gnl|fr1|chrUn (175911868-175911964) | |
| 386-516, gnl|hg17|chr7 (140708206-140708562) | |
| 386-516, gnl|Hg17|chr7 (140708442-140708566) | |
| 386-516, gnl|hg17|chrX (130990816-130990915) | |
| 386-516, gnl|loxAfr1|scaffold_83430 (4688-5008) | |
| 386-516, gnl|loxAfr1|scaffold_83430 (4998-4899) | |
| 386-516, gnl|mm7|chr13 (86652697-86652795) | |
| 386-516, gnl|mm7|chr6 (40259311-40259634) | |
| 386-516, gnl|Mm7|chr6 (40259512-40259641) | |
| 386-516, gnl|monDom2|scaffold_1 (20334231-20334329) | |
| 386-516, gnl|monDom2|scaffold_22 (429960-429611) | |
| 386-516, gnl|oryCun1|scaffold_193805 (4404-4104) | |
| 386-516, gnl|oryCun1|scaffold_193805 (4114-4213) | |
| 386-516, gnl|panTro1|chr6 (143464563-143464919) | |
| 386-516, gnl|panTro1|chrX (135266921-135267020) | |
| 386-516, gnl|rheMac2|chr3 (179032830-179033177) | |
| 386-516, gnl|rheMac2|chrX (130356390-130356489) | |
| 386-516, gnl|rn3|chr4 (68160030-68160349) | |
| 386-516, gnl|rn3|chr4 (68160340-68160241) | |
| 386-516, gnl|tetNig1|chr13 (1679113-1679201) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) | |
| med (0.116252) |