Non-Coding RNA Search

Ss1.1-Lng1-LNG010045A12.5

Sequence:


               
               TTCCGCGGCTTTGCGGGAGTAGGGGAGCTGCCGGGCCGCCGCTGGGCACTCTAGTTGCAG
AGGCGCTAGGGCTTAGGTGGCAGCTGGAACCGCAGCGGGACCCAGGCGGCGGGACACTGG
CCGGGCGCCCACCCGATCTAGGCCGCTCTTGCCCTCGCGGGCCCCCTCTTCGCCCCGCCC
CCACGAGGCCCTGAAGTGGCTCCGCCCCCCGATCTGAGCCGGGTCCCTCCTCTGGCGCTG
ACCCTTGGCTTCGGAACCGCGCCCCCATCTCTCAGGCGCGATGGCTACGGGCGCAGATGT
GAGGGACATTCTAGAACTCGGGGGTCCAGAGGGGGATGCAGCCTCCGGGACCATCAGCAA
GAAGGACATTATCAATCCGGACAAGAAAAAGTCCAAGAAATCCTCGGAGACACTGACCTT
CAAGAGGCCAGAGGGCATGCACCGGGAAGTCTATGCACTGCTGTACTCTGACAAGAAGGA
TGCTCCCCCACTGCTCCCCAGTGACACTGGTCAAGGCTACCGCACGGTGAAGGCCAAGTT
GGGCTCCAAGAAGGTGCGGCCCTGGAAGTGGATGCCATTCACCAACCCTGCCCGCAAGGA
CGGAGCCATGTTCTTCCACTGGCGACGAGCAGCTGAGGAGGGCAAGGACTACCCCTTCGC
CAGGTTCAACAAGACGGTGCAGGTGCCCGTGTACTCAGAGCAGGAGTACCAGCTCTACCT
TCACGACGACGCCTGGACGAAGGCGGAAACCGACCACCTCTTCGACCTCAGCCGCCGCTT
CGACCTACGCTTTGTCGTCATCCATGACCGGTACGACCACCAGCAGTTCAAGAAACGCTC
TGTGGAGGACCTGAAGGAGCGGTACTACCACATCTGTGCCAAGCTCGCCAACGTGAGGGC
CGTGCCAGGCACAGACCTCAAGATACCAGTGTTTGATGCTGGGCACGAGCGACGGCGGAA
GGAACAGCTGGAGCGTCTCTATAATCGGACCCCGGAGCAGGTGGCGGAGGAGGAGTACCT
GCTGCAGGAGCTGCGCAAGATTGAGGCCCGGAAGAAGGAGCGGGAGAAGCGCAGCCAGGA
CCTGCAGAAGCTGATTACGGCAGCGGACACCACTGCCGAGCAGCGGCGGACGGAACGCAA
GGCCCCCAAGAAGAAGCTCCCCCAGAAGAAGGAGGCCGAGAAGCCGGCCGTTCCCGAGAC
CGCAGGCATCAAGTTTCCAGACTTCAAGTCTGCAGGTGTCACCCTGCGGAGCCAGCGGAT
GAAGCTGCCAAGCTCTGTGGGACAGAAGAAGATCAAGGCCCTGGAACAGATGCTGCTGGA
GCTGGGCGTGGAGCTGAGCCCGACGCCCACGGAGGAGCTGGTGCACATGTTCAACGAGCT
GCGGAGCGACCTGGTGCTGCTCTACGAGCTCAAGCAGGCCTGCGCCAACTGCGAGTACGA
GCTCCAGATGCTGCGGCACCGGCACGAGGCGCTGGCCCGGGCTGGCGTGCTCGGGGGCCC
TGCCACGCCGGCCTCGGGCCCGACCCCCACCCCGGCCGAGCCAGTGGTGCCTGAAGCCGG
TCTCGGCCCCGACCCCAGCAAGGACAGCATCATCGATGTGGTGGGCGCGCCCCTCACGCC
CAACTCGAGGAAGCGACGGGAGTCGGCCTCCAGCTCCTCTTCGGTGAAGAAAGCCAAGAA
GCCGTGAGAGGCCACACCGGGTGGGGTGCTGCTGTGTAAATAGAGCTGCTGAGCTGGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCGCGGCTTTGCGGGAGTAGGGGAGCTGCCGGGCCGCCGCTGGGCACTCTAGTTGCAG
AGGCGCTAGGGCTTAGGTGGCAGCTGGAACCGCAGCGGGACCCAGGCGGCGGGACACTGG
CCGGGCGCCCACCCGATCTAGGCCGCTCTTGCCCTCGCGGGCCCCCTCTTCGCCCCGCCC
CCACGAGGCCCTGAAGTGGCTCCGCCCCCCGATCTGAGCCGGGTCCCTCCTCTGGCGCTG
ACCCTTGGCTTCGGAACCGCGCCCCCATCTCTCAGGCGCGATGGCTACGGGCGCAGATGT
GAGGGACATTCTAGAACTCGGGGGTCCAGAGGGGGATGCAGCCTCCGGGACCATCAGCAA
GAAGGACATTATCAATCCGGACAAGAAAAAGTCCAAGAAATCCTCGGAGACACTGACCTT
CAAGAGGCCAGAGGGCATGCACCGGGAAGTCTATGCACTGCTGTACTCTGACAAGAAGGA
TGCTCCCCCACTGCTCCCCAGTGACACTGGTCAAGGCTACCGCACGGTGAAGGCCAAGTT
GGGCTCCAAGAAGGTGCGGCCCTGGAAGTGGATGCCATTCACCAACCCTGCCCGCAAGGA
CGGAGCCATGTTCTTCCACTGGCGACGAGCAGCTGAGGAGGGCAAGGACTACCCCTTCGC
CAGGTTCAACAAGACGGTGCAGGTGCCCGTGTACTCAGAGCAGGAGTACCAGCTCTACCT
TCACGACGACGCCTGGACGAAGGCGGAAACCGACCACCTCTTCGACCTCAGCCGCCGCTT
CGACCTACGCTTTGTCGTCATCCATGACCGGTACGACCACCAGCAGTTCAAGAAACGCTC
TGTGGAGGACCTGAAGGAGCGGTACTACCACATCTGTGCCAAGCTCGCCAACGTGAGGGC
CGTGCCAGGCACAGACCTCAAGATACCAGTGTTTGATGCTGGGCACGAGCGACGGCGGAA
GGAACAGCTGGAGCGTCTCTATAATCGGACCCCGGAGCAGGTGGCGGAGGAGGAGTACCT
GCTGCAGGAGCTGCGCAAGATTGAGGCCCGGAAGAAGGAGCGGGAGAAGCGCAGCCAGGA
CCTGCAGAAGCTGATTACGGCAGCGGACACCACTGCCGAGCAGCGGCGGACGGAACGCAA
GGCCCCCAAGAAGAAGCTCCCCCAGAAGAAGGAGGCCGAGAAGCCGGCCGTTCCCGAGAC
CGCAGGCATCAAGTTTCCAGACTTCAAGTCTGCAGGTGTCACCCTGCGGAGCCAGCGGAT
GAAGCTGCCAAGCTCTGTGGGACAGAAGAAGATCAAGGCCCTGGAACAGATGCTGCTGGA
GCTGGGCGTGGAGCTGAGCCCGACGCCCACGGAGGAGCTGGTGCACATGTTCAACGAGCT
GCGGAGCGACCTGGTGCTGCTCTACGAGCTCAAGCAGGCCTGCGCCAACTGCGAGTACGA
GCTCCAGATGCTGCGGCACCGGCACGAGGCGCTGGCCCGGGCTGGCGTGCTCGGGGGCCC
TGCCACGCCGGCCTCGGGCCCGACCCCCACCCCGGCCGAGCCAGTGGTGCCTGAAGCCGG
TCTCGGCCCCGACCCCAGCAAGGACAGCATCATCGATGTGGTGGGCGCGCCCCTCACGCC
CAACTCGAGGAAGCGACGGGAGTCGGCCTCCAGCTCCTCTTCGGTGAAGAAAGCCAAGAA
GCCGTGAGAGGCCACACCGGGTGGGGTGCTGCTGTGTAAATAGAGCTGCTGAGCTGGGAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q568Y6_RAT

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q568Y6_RAT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               248-1062, gnl|bosTau2|chr3 (1803523-1804331)
               

               
               248-1062, gnl|Hg17|chr1 (44348504-44353891)
               

               
               248-1062, gnl|Mm7|chr4 (117058392-117052504)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               248-1062, gnl|bosTau2|chr3 (1803523-1804331)
               

               
               248-1062, gnl|Hg17|chr1 (44348504-44353891)
               

               
               248-1062, gnl|Mm7|chr4 (117058392-117052504)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               hyp (0.285673)
               

               
               jca (0.22792)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               hlv (0.139256)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.285673)
               

               
               jca (0.22792)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               hlv (0.139256)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	248-1062, gnl\|bosTau2\|chr3 (1803523-1804331)
	248-1062, gnl\|Hg17\|chr1 (44348504-44353891)
	248-1062, gnl\|Mm7\|chr4 (117058392-117052504)

	hyp (0.285673)
	jca (0.22792)
	nco (0.161734)
	cag (0.151194)
	hlv (0.139256)
	nmm (0.132802)
	eep (0.122564)
	eru (0.120048)
	jej (0.0989218)
	eje (0.0988338)