Non-Coding RNA Search

Ss1.1-Lng1-LNG010045C09.5

Sequence:


               
               GGTGTTCTTGGATAGCCACTGTGAGGTGAATAAAATCTGGCTGGAGCCCTTGCTGGATGC
CATCGTCAAGGACCCCAAAATGGTGGTGTGTCCTATCATGGACGTCATTGACTATGTCAC
CCTGGAGTACAAGCCCTCTCCCGTTGTAAGGGGCGTTTTCAACTGGCATCTACAGTTCGA
ATGGGATCGTGTTTTCTCTTATGAGATGGATGGACCAGATGGACCTACCAGACCTATCCG
GTCACCCGCGATGGTTGGAGGACTTTTTGCTATACATAGGCATTATTTTAATGAAATTGG
ACAGTATGACAAAGGCATGAATCTCTGGGGAGGAGAAAACCTGGAACTTTCTCTAAGGAT
TTGGATGTGTGGAGGCCAGCTATTTCTACTCCCCTGCTCTCGAGTAGGACATATCAATAA
GCCCTACTTCACAAATCAAGGTGAAATTAAGAAAGCCATGGCATATAACAACCTCCGCAT
TGTGCATGTCTGGCTAGACGAATACAAGGAGCAGTTTTTTTTACAAAACCCTAGGCTGAA
ATCTCTTGCCTATGGTAACGTTAGTGAGCGTGTTGAATTAAGGAAACGATTGGGTTGCAA
GTCATTTCAGTGGTATTTGGATACCGTCTTCCCAGAACTGGAGACAAGTAACAGCATCTG
ATGAAAGGAAGACCAATCGTTTTTGTTGATAAGGTGTTAAAAAGTCCCCCGATCCTTCAC
CATAGAGAAGAGGACAAATTTGGAACACGGTGAAATTCAGTAAGAAATATAACCCAGAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGTTCTTGGATAGCCACTGTGAGGTGAATAAAATCTGGCTGGAGCCCTTGCTGGATGC
CATCGTCAAGGACCCCAAAATGGTGGTGTGTCCTATCATGGACGTCATTGACTATGTCAC
CCTGGAGTACAAGCCCTCTCCCGTTGTAAGGGGCGTTTTCAACTGGCATCTACAGTTCGA
ATGGGATCGTGTTTTCTCTTATGAGATGGATGGACCAGATGGACCTACCAGACCTATCCG
GTCACCCGCGATGGTTGGAGGACTTTTTGCTATACATAGGCATTATTTTAATGAAATTGG
ACAGTATGACAAAGGCATGAATCTCTGGGGAGGAGAAAACCTGGAACTTTCTCTAAGGAT
TTGGATGTGTGGAGGCCAGCTATTTCTACTCCCCTGCTCTCGAGTAGGACATATCAATAA
GCCCTACTTCACAAATCAAGGTGAAATTAAGAAAGCCATGGCATATAACAACCTCCGCAT
TGTGCATGTCTGGCTAGACGAATACAAGGAGCAGTTTTTTTTACAAAACCCTAGGCTGAA
ATCTCTTGCCTATGGTAACGTTAGTGAGCGTGTTGAATTAAGGAAACGATTGGGTTGCAA
GTCATTTCAGTGGTATTTGGATACCGTCTTCCCAGAACTGGAGACAAGTAACAGCATCTG
ATGAAAGGAAGACCAATCGTTTTTGTTGATAAGGTGTTAAAAAGTCCCCCGATCCTTCAC
CATAGAGAAGAGGACAAATTTGGAACACGGTGAAATTCAGTAAGAAATATAACCCAGAAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55629880|ref|XP_519511.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55629880|ref|XP_519511.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-415, gnl|bosTau2|chr12 (2698140-2698564)
               

               
               1-415, gnl|Hg17|chr1 (65754923-65754510)
               

               
               1-415, gnl|Mm7|chr5 (24295410-24299361)
               


               
               507-772, gnl|bosTau2|chr4 (66857823-66857561)
               

               
               507-772, gnl|Hg17|chr7 (151154377-151154643)
               

               
               507-772, gnl|Mm7|chr5 (24260497-24260763)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-415, gnl|bosTau2|chr12 (2698140-2698564)
               

               
               1-415, gnl|Hg17|chr1 (65754923-65754510)
               

               
               1-415, gnl|Mm7|chr5 (24295410-24299361)
               


               
               507-772, gnl|bosTau2|chr4 (66857823-66857561)
               

               
               507-772, gnl|Hg17|chr7 (151154377-151154643)
               

               
               507-772, gnl|Mm7|chr5 (24260497-24260763)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               tes (1.4547)
               

               
               cte (0.29274)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (1.4547)
               

               
               cte (0.29274)

	1-415, gnl\|bosTau2\|chr12 (2698140-2698564)
	1-415, gnl\|Hg17\|chr1 (65754923-65754510)
	1-415, gnl\|Mm7\|chr5 (24295410-24299361)

	507-772, gnl\|bosTau2\|chr4 (66857823-66857561)
	507-772, gnl\|Hg17\|chr7 (151154377-151154643)
	507-772, gnl\|Mm7\|chr5 (24260497-24260763)