Ss1.1-Lng1-LNG010045H06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGTGAGAGGTGCACGCGTAGCGCTTGAGGTTGCCAAAGTCGCAGGTGCTGTCCTCCAGG CAGAAGCTGGCCTTGTGGCCCTCGGCCACTTTCTTGCCTGTGGCTGCGTCCAGCAGGTCA TAGTGGCTGAACTCGTCCATGCTGTGGTAATGTTGGTGGCAGCTGTGCCACTCCCAGGTG TGCCGTGGCCGGTTCGGGAGGAAGTCTGCTGTGCCCTGGTTCTTCACGCGCTGGGGGAAA CGCAGCAGCACCCGCACGTCATAGTCGGTGGCCTCTGGGGCATAGGCTGTGCTGGCTAGA CACTTCTCCTCGGCAGCACAGCGCAGGGAGTACAGGTGGGCTCTCTGGACGTAGGTGGAC GCTTGCACGTAGTTGGGGTCCGGCACCAAGTCAGGAAGACCTCGACCGTTCTGGTTGGGC CGGTACACGCTGCCCACACTGAGGCGGCCCTGCTGCGCGCCGCTGCGCTCGGAACCCGGT GGGGGCGCGTCGGAGCTGCGCACGGGCAGGTAGGGAGGCTCCAGCACGCGGAAAGGGGGC TGCGGCTCCACGGCCCGCGGCGGGCTGTAGGCCTCTGGCGGCATGTTGCCGTAGGGCGGG TACCAGCCGAAGCGGGGGTCGCCGCCGTAGGTGCCGCCGTTGGGCTGCGCGGCGTCGGGG CCCGAGTCGGGGTAGGCCCGCTCGAGGCCCGCGGTGCCCTCGTGGTACAGGCTGTGCGAG TAGCGGCGGTCCAGGCCGTCGGCGGGCTGCGGTGGCGGCTGCGGCGCGGGCGGCCTCTCC AGGGCCGGGTAGAAGCCCTGCGGCGGGTACTCGGGCTGCTCCTCGCCGCCGCCGCCGTAC TCCTCGTAGCGCGCCCGGGGCTGGGGCTGGAAGGGGTAGACGACCCCCGCCGAGGCCACG GCCGCCGCCCCTGCTCCCAGGCCGCCTCCCGGGCCGCGGTAGTACACGTAGCCCTGGTCG TAGGTCCGCGACGCGGGGTCGTACGTCTCGTACTGGCTGACGAAGGGCGCCTGCGGGTAG GGGAACTGCTGCGGGAAGGAGGGCGGCTGGCGGTAGGTGGTGGCGAAGGCCGAGGCCGAG ACCGAGGAGGCGGAGCCCCCATGCCGTTGCTGGGAGACGGAGGTGCGGACCCGGGCCATG CCTGTGCTGTCCCCGACGGCCACTTCGCGCCAGTTGTCGGGCACCTGGCCGAAGCCAAAG GGGTGCCGCGCTTGGCCGCGCACGGTGTCCGAGCCGACGCGCCCGGGCAGGGGCAGGGAT GGGGCCTGCCGACGCCGGAGGCCCCCCTGGCTGCGCCGCTGCGGGGCCTGGGGGGCTCCG GCCAGCAGCACTCGGGAGTTACCTTCGGAGCGCTGAGGCCCCGCCGGCACGTACTCGGAG CCCGAGTTGAGCAGGCTGTACACCTGCCCGTTGTTCTCCCACTGGATCAGCTGCCGCCAG CGTCCCGGATCTGAGCCCTGCCCCGGCTGCGCCTGCTGCCCATGCACCAGCACGCAGAGG CAGGCGCCCCACACTAGGGCCCCCAGCTGCCAGCCGGCTGGGGCCAGAGCCATGGTGGCC CCTCTGCAGAGGCCTGATGGACCGAGAGGCTCTCGGGAGTGGCCCCCTGTGCCTGCTTTT CTTCCCACGGCCTCGAGGACAGGACGGCTCCTTGCCTGCCCCAGCTCTAGCTTTGTCCAT CCTGGCCTTGTCCCGAGCGGGACCGCTCCTCCGATGACAGCATTTCGAGGCCAAGGGGTC AGGGCAGGGCAGGGGCGGTGCCCAGGGCTGCAGGAGGCTCTCTGCAGGGCACTGGGCAGG CAGGACTGCCTGGGGGCCTTACATGGCCAGCCCGGCACTGGCTGGCCGCTTGGCTGGCGC TTTCCCACTCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGTGAGAGGTGCACGCGTAGCGCTTGAGGTTGCCAAAGTCGCAGGTGCTGTCCTCCAGG CAGAAGCTGGCCTTGTGGCCCTCGGCCACTTTCTTGCCTGTGGCTGCGTCCAGCAGGTCA TAGTGGCTGAACTCGTCCATGCTGTGGTAATGTTGGTGGCAGCTGTGCCACTCCCAGGTG TGCCGTGGCCGGTTCGGGAGGAAGTCTGCTGTGCCCTGGTTCTTCACGCGCTGGGGGAAA CGCAGCAGCACCCGCACGTCATAGTCGGTGGCCTCTGGGGCATAGGCTGTGCTGGCTAGA CACTTCTCCTCGGCAGCACAGCGCAGGGAGTACAGGTGGGCTCTCTGGACGTAGGTGGAC GCTTGCACGTAGTTGGGGTCCGGCACCAAGTCAGGAAGACCTCGACCGTTCTGGTTGGGC CGGTACACGCTGCCCACACTGAGGCGGCCCTGCTGCGCGCCGCTGCGCTCGGAACCCGGT GGGGGCGCGTCGGAGCTGCGCACGGGCAGGTAGGGAGGCTCCAGCACGCGGAAAGGGGGC TGCGGCTCCACGGCCCGCGGCGGGCTGTAGGCCTCTGGCGGCATGTTGCCGTAGGGCGGG TACCAGCCGAAGCGGGGGTCGCCGCCGTAGGTGCCGCCGTTGGGCTGCGCGGCGTCGGGG CCCGAGTCGGGGTAGGCCCGCTCGAGGCCCGCGGTGCCCTCGTGGTACAGGCTGTGCGAG TAGCGGCGGTCCAGGCCGTCGGCGGGCTGCGGTGGCGGCTGCGGCGCGGGCGGCCTCTCC AGGGCCGGGTAGAAGCCCTGCGGCGGGTACTCGGGCTGCTCCTCGCCGCCGCCGCCGTAC TCCTCGTAGCGCGCCCGGGGCTGGGGCTGGAAGGGGTAGACGACCCCCGCCGAGGCCACG GCCGCCGCCCCTGCTCCCAGGCCGCCTCCCGGGCCGCGGTAGTACACGTAGCCCTGGTCG TAGGTCCGCGACGCGGGGTCGTACGTCTCGTACTGGCTGACGAAGGGCGCCTGCGGGTAG GGGAACTGCTGCGGGAAGGAGGGCGGCTGGCGGTAGGTGGTGGCGAAGGCCGAGGCCGAG ACCGAGGAGGCGGAGCCCCCATGCCGTTGCTGGGAGACGGAGGTGCGGACCCGGGCCATG CCTGTGCTGTCCCCGACGGCCACTTCGCGCCAGTTGTCGGGCACCTGGCCGAAGCCAAAG GGGTGCCGCGCTTGGCCGCGCACGGTGTCCGAGCCGACGCGCCCGGGCAGGGGCAGGGAT GGGGCCTGCCGACGCCGGAGGCCCCCCTGGCTGCGCCGCTGCGGGGCCTGGGGGGCTCCG GCCAGCAGCACTCGGGAGTTACCTTCGGAGCGCTGAGGCCCCGCCGGCACGTACTCGGAG CCCGAGTTGAGCAGGCTGTACACCTGCCCGTTGTTCTCCCACTGGATCAGCTGCCGCCAG CGTCCCGGATCTGAGCCCTGCCCCGGCTGCGCCTGCTGCCCATGCACCAGCACGCAGAGG CAGGCGCCCCACACTAGGGCCCCCAGCTGCCAGCCGGCTGGGGCCAGAGCCATGGTGGCC CCTCTGCAGAGGCCTGATGGACCGAGAGGCTCTCGGGAGTGGCCCCCTGTGCCTGCTTTT CTTCCCACGGCCTCGAGGACAGGACGGCTCCTTGCCTGCCCCAGCTCTAGCTTTGTCCAT CCTGGCCTTGTCCCGAGCGGGACCGCTCCTCCGATGACAGCATTTCGAGGCCAAGGGGTC AGGGCAGGGCAGGGGCGGTGCCCAGGGCTGCAGGAGGCTCTCTGCAGGGCACTGGGCAGG CAGGACTGCCTGGGGGCCTTACATGGCCAGCCCGGCACTGGCTGGCCGCTTGGCTGGCGC TTTCCCACTCTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 978-1128, - strand, RNAz p=0.718007 | |
| 1449-1872, - strand, RNAz p=0.973931 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 978-1128, - strand, RNAz p=0.718007 | |
| 1449-1872, - strand, RNAz p=0.973931 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 1-152, gnl|bosTau2|chr21 (23932088-23931937) | |
| 1-152, gnl|canFam2|chr30 (40197724-40197944) | |
| 1-152, gnl|danRer3|chr18 (50177901-50178076) | |
| 1-152, gnl|dasNov1|scaffold_8413 (2542-2352) | |
| 1-152, gnl|echTel1|scaffold_278459 (2724-2526) | |
| 1-152, gnl|fr1|chrUn (212420703-212420484) | |
| 1-152, gnl|galGal2|chrUn (148649569-148649777) | |
| 1-152, gnl|hg17|chr15 (72026429-72026649) | |
| 1-152, gnl|Hg17|chr15 (72026613-72026462) | |
| 1-152, gnl|loxAfr1|scaffold_126833 (1320-1100) | |
| 1-152, gnl|mm7|chr9 (58322246-58322043) | |
| 1-152, gnl|Mm7|chr9 (58322072-58322223) | |
| 1-152, gnl|monDom2|scaffold_41 (4385982-4385791) | |
| 1-152, gnl|oryCun1|scaffold_199410 (8322-8103) | |
| 1-152, gnl|panTro1|chr16_random (21159020-21159240) | |
| 1-152, gnl|rheMac2|chr7 (52629038-52629265) | |
| 1-152, gnl|rn3|chr8 (62107461-62107257) | |
| 1-152, gnl|tetNig1|chr5 (2044093-2044295) | |
| 1-152, gnl|xenTro1|scaffold_62 (126676-126494) | |
| 154-294, gnl|bosTau2|chr21 (23931507-23931367) | |
| 154-294, gnl|canFam2|chr30 (40197164-40197312) | |
| 154-294, gnl|danRer3|chr18 (50174036-50174182) | |
| 154-294, gnl|dasNov1|scaffold_8413 (4405-4252) | |
| 154-294, gnl|echTel1|scaffold_278459 (3217-3068) | |
| 154-294, gnl|fr1|chrUn (212425641-212425494) | |
| 154-294, gnl|hg17|chr15 (72025809-72025962) | |
| 154-294, gnl|Hg17|chr15 (72025948-72025808) | |
| 154-294, gnl|loxAfr1|scaffold_8565 (23126-22987) | |
| 154-294, gnl|mm7|chr9 (58322995-58322842) | |
| 154-294, gnl|Mm7|chr9 (58322854-58322994) | |
| 154-294, gnl|monDom2|scaffold_41 (4387164-4387018) | |
| 154-294, gnl|oryCun1|scaffold_199410 (10298-10146) | |
| 154-294, gnl|panTro1|chr16_random (21158403-21158556) | |
| 154-294, gnl|rheMac2|chr7 (52628424-52628577) | |
| 154-294, gnl|rn3|chr8 (62108026-62107873) | |
| 154-294, gnl|tetNig1|chr5 (2041325-2041472) | |
| 154-294, gnl|xenTro1|scaffold_62 (127614-127461) | |
| 399-1872, gnl|bosTau2|chr21 (23914170-23912691) | |
| 399-1872, gnl|Hg17|chr15 (72007281-72005859) | |
| 399-1872, gnl|Mm7|chr9 (58340353-58341866) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-152, gnl|bosTau2|chr21 (23932088-23931937) | |
| 1-152, gnl|canFam2|chr30 (40197724-40197944) | |
| 1-152, gnl|danRer3|chr18 (50177901-50178076) | |
| 1-152, gnl|dasNov1|scaffold_8413 (2542-2352) | |
| 1-152, gnl|echTel1|scaffold_278459 (2724-2526) | |
| 1-152, gnl|fr1|chrUn (212420703-212420484) | |
| 1-152, gnl|galGal2|chrUn (148649569-148649777) | |
| 1-152, gnl|hg17|chr15 (72026429-72026649) | |
| 1-152, gnl|Hg17|chr15 (72026613-72026462) | |
| 1-152, gnl|loxAfr1|scaffold_126833 (1320-1100) | |
| 1-152, gnl|mm7|chr9 (58322246-58322043) | |
| 1-152, gnl|Mm7|chr9 (58322072-58322223) | |
| 1-152, gnl|monDom2|scaffold_41 (4385982-4385791) | |
| 1-152, gnl|oryCun1|scaffold_199410 (8322-8103) | |
| 1-152, gnl|panTro1|chr16_random (21159020-21159240) | |
| 1-152, gnl|rheMac2|chr7 (52629038-52629265) | |
| 1-152, gnl|rn3|chr8 (62107461-62107257) | |
| 1-152, gnl|tetNig1|chr5 (2044093-2044295) | |
| 1-152, gnl|xenTro1|scaffold_62 (126676-126494) | |
| 154-294, gnl|bosTau2|chr21 (23931507-23931367) | |
| 154-294, gnl|canFam2|chr30 (40197164-40197312) | |
| 154-294, gnl|danRer3|chr18 (50174036-50174182) | |
| 154-294, gnl|dasNov1|scaffold_8413 (4405-4252) | |
| 154-294, gnl|echTel1|scaffold_278459 (3217-3068) | |
| 154-294, gnl|fr1|chrUn (212425641-212425494) | |
| 154-294, gnl|hg17|chr15 (72025809-72025962) | |
| 154-294, gnl|Hg17|chr15 (72025948-72025808) | |
| 154-294, gnl|loxAfr1|scaffold_8565 (23126-22987) | |
| 154-294, gnl|mm7|chr9 (58322995-58322842) | |
| 154-294, gnl|Mm7|chr9 (58322854-58322994) | |
| 154-294, gnl|monDom2|scaffold_41 (4387164-4387018) | |
| 154-294, gnl|oryCun1|scaffold_199410 (10298-10146) | |
| 154-294, gnl|panTro1|chr16_random (21158403-21158556) | |
| 154-294, gnl|rheMac2|chr7 (52628424-52628577) | |
| 154-294, gnl|rn3|chr8 (62108026-62107873) | |
| 154-294, gnl|tetNig1|chr5 (2041325-2041472) | |
| 154-294, gnl|xenTro1|scaffold_62 (127614-127461) | |
| 399-1872, gnl|bosTau2|chr21 (23914170-23912691) | |
| 399-1872, gnl|Hg17|chr15 (72007281-72005859) | |
| 399-1872, gnl|Mm7|chr9 (58340353-58341866) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| jca (0.22792) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| nca (0.136874) | |
| eep (0.122564) | |
| cly (0.120642) | |
| clu (0.119646) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jca (0.22792) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| nca (0.136874) | |
| eep (0.122564) | |
| cly (0.120642) | |
| clu (0.119646) |