Non-Coding RNA Search

Ss1.1-Lng1-LNG010046B02.5

Sequence:


               
               AAGGATGTGAGGCTGGCGAGGCGGCTACTGCTCGTGGCACCGGAGGGGGCGCGCTGCAAA
GGCGGGCAGCCGAGCGAAGAGATCCCGGGAGCGGAGTTGGACACTCTCCGGAGGGAAGAA
ATGAGGTAGCGACCGTCCCCGGAGCGGGCTATGCGCGTGCCCTGCCCTCGGAGCCCCGCG
CTGCCCCGGCCGAGCCAGCCCGGACAGTGAGCCGGCGGAGCCGGAGTCCCCGGCGTCCTG
CCGGAGCGAAGATGCAGTGACCCACCGAAGGACTGCTGCGCGGGGCCCGCTGGGGCCAGC
CGGACCCACCATCTGAGTGCACTTGGGGCAAGCAGCTGATTCTGGGACCCGCTCGGCCGA
GGGGCTTTTTGCCTCCAGCACCCCTTGGGGTGGGGAGCACTGGCTCCTGGGCACACTCGC
GGTTGTTTCCGCGGTTTCTGGCCCTAGCCCTGGGGGTTGAGTGTGTGAATGTGAGAGGGG
GGCCCTTTTCACCTTCGCCGAGGAGTTCCTGCGTATTCTCGCACCATCCCGGCTGCTCTT
GCTGGGGCTCTCTCATTTATTTGCACGCGCGTATCTCTCTCTCTCTCTTTTTTTTCCTAA
AGACATTTTCCGCTCCACTCTCGTGCTGTCTTTCTCTCATTTGGCTTGCCTAAGACTCTT
TGCCCTCGTCCTGCCCAGGCTGGGGTAAATCTGTGTTCGTCCCCCCTCCCCCCAACTCCC
GCAGTTAAACCTTTTCTTCTTTTTAAAAATTCTTTCCCTACCTCTTTCGGCGGGGTTCCG
GAGCGCTATACACGCCCCCGCCCCCACTCCCTCCGACCCGGCCACTCCCAGCAGAGTTTT
ATTTTTCGGTCTTGCCCGGGCCCAGCCCGGCCGGGGCGGGTGGCTCAGCCGGGCTTCCAC
CCGGCGCTCCGCCGCCACCGCCGCCAGCTGCGCGGGGGCGCCCTCCGGAGATGCTGCCGT
GGAAGAAGCATAAGTTCGAGCTGCTGGCCGAGGCGCCGCCACGGCAGGCGTCCAAGCCCA
AGGGCTACGCGGTGAGCCTGCACTACTCGGCGCTCAGCTCGCTGGCTCGGGCTTGCCCCG
AAGGCGCGCTCAGCAGGGTGGGAAGCATGTTCCGCTCCAAGCGCAAGAAGCTGCATATCA
CCAGCGAGGACCCTACTTACACCGTGCTCTACCTGGGCAATGCCACCACCATCCAGGCGC
GCGGCGACGGCTGCACTGACCTAGCGGTGGGCAAGATCTGGAGCAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGATGTGAGGCTGGCGAGGCGGCTACTGCTCGTGGCACCGGAGGGGGCGCGCTGCAAA
GGCGGGCAGCCGAGCGAAGAGATCCCGGGAGCGGAGTTGGACACTCTCCGGAGGGAAGAA
ATGAGGTAGCGACCGTCCCCGGAGCGGGCTATGCGCGTGCCCTGCCCTCGGAGCCCCGCG
CTGCCCCGGCCGAGCCAGCCCGGACAGTGAGCCGGCGGAGCCGGAGTCCCCGGCGTCCTG
CCGGAGCGAAGATGCAGTGACCCACCGAAGGACTGCTGCGCGGGGCCCGCTGGGGCCAGC
CGGACCCACCATCTGAGTGCACTTGGGGCAAGCAGCTGATTCTGGGACCCGCTCGGCCGA
GGGGCTTTTTGCCTCCAGCACCCCTTGGGGTGGGGAGCACTGGCTCCTGGGCACACTCGC
GGTTGTTTCCGCGGTTTCTGGCCCTAGCCCTGGGGGTTGAGTGTGTGAATGTGAGAGGGG
GGCCCTTTTCACCTTCGCCGAGGAGTTCCTGCGTATTCTCGCACCATCCCGGCTGCTCTT
GCTGGGGCTCTCTCATTTATTTGCACGCGCGTATCTCTCTCTCTCTCTTTTTTTTCCTAA
AGACATTTTCCGCTCCACTCTCGTGCTGTCTTTCTCTCATTTGGCTTGCCTAAGACTCTT
TGCCCTCGTCCTGCCCAGGCTGGGGTAAATCTGTGTTCGTCCCCCCTCCCCCCAACTCCC
GCAGTTAAACCTTTTCTTCTTTTTAAAAATTCTTTCCCTACCTCTTTCGGCGGGGTTCCG
GAGCGCTATACACGCCCCCGCCCCCACTCCCTCCGACCCGGCCACTCCCAGCAGAGTTTT
ATTTTTCGGTCTTGCCCGGGCCCAGCCCGGCCGGGGCGGGTGGCTCAGCCGGGCTTCCAC
CCGGCGCTCCGCCGCCACCGCCGCCAGCTGCGCGGGGGCGCCCTCCGGAGATGCTGCCGT
GGAAGAAGCATAAGTTCGAGCTGCTGGCCGAGGCGCCGCCACGGCAGGCGTCCAAGCCCA
AGGGCTACGCGGTGAGCCTGCACTACTCGGCGCTCAGCTCGCTGGCTCGGGCTTGCCCCG
AAGGCGCGCTCAGCAGGGTGGGAAGCATGTTCCGCTCCAAGCGCAAGAAGCTGCATATCA
CCAGCGAGGACCCTACTTACACCGTGCTCTACCTGGGCAATGCCACCACCATCCAGGCGC
GCGGCGACGGCTGCACTGACCTAGCGGTGGGCAAGATCTGGAGCAAGA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               1-118, + strand, RNAz p=0.686736
               

               
               462-565, - strand, RNAz p=0.989385
               

               
               1042-1161, - strand, RNAz p=0.516834

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-118, + strand, RNAz p=0.686736
               

               
               462-565, - strand, RNAz p=0.989385
               

               
               1042-1161, - strand, RNAz p=0.516834

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-565, gnl|bosTau2|chr1 (43643075-43642514)
               

               
               1-565, gnl|Hg17|chr3 (195887909-195888467)
               

               
               1-565, gnl|Mm7|chr16 (30273741-30274262)
               


               
               586-1248, gnl|bosTau2|chr1 (43642513-43641851)
               

               
               586-1248, gnl|Hg17|chr3 (195888472-195889150)
               

               
               586-1248, gnl|Mm7|chr16 (30274263-30274912)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-565, gnl|bosTau2|chr1 (43643075-43642514)
               

               
               1-565, gnl|Hg17|chr3 (195887909-195888467)
               

               
               1-565, gnl|Mm7|chr16 (30273741-30274262)
               


               
               586-1248, gnl|bosTau2|chr1 (43642513-43641851)
               

               
               586-1248, gnl|Hg17|chr3 (195888472-195889150)
               

               
               586-1248, gnl|Mm7|chr16 (30274263-30274912)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               csp (0.161186)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.161186)

	1-118, + strand, RNAz p=0.686736
	462-565, - strand, RNAz p=0.989385
	1042-1161, - strand, RNAz p=0.516834

	1-565, gnl\|bosTau2\|chr1 (43643075-43642514)
	1-565, gnl\|Hg17\|chr3 (195887909-195888467)
	1-565, gnl\|Mm7\|chr16 (30273741-30274262)

	586-1248, gnl\|bosTau2\|chr1 (43642513-43641851)
	586-1248, gnl\|Hg17\|chr3 (195888472-195889150)
	586-1248, gnl\|Mm7\|chr16 (30274263-30274912)