Non-Coding RNA Search

Ss1.1-Lng1-LNG010046F10.5.5

Sequence:


               
               TCTGCAGCTGTCGCCTCTGCTTCAGCCGCTAACGCCACAGGCCCTTGAGCCTTTTCCAGG
TGTCTGCCTTAATCCGCCTCCAGAGCCGGATCTTTCTCTGGTGGGGTCCTCAGCAAAGGC
CGCTGCCATGCCGGTGACGGTGACCCGTACCACCATCACGACAACCACGTCGTCGTCCTC
GGGCCTGGGCTCCTCGACCATCGTGGGGTCCCCTCGGGCACTGACCCAGCCCCTGGGCCT
CCTCCGCCTGCTGCAGCTGATCTCCACCTGCGTGGCCTTCTCACTGGTGGCCAGCGTGGG
CGCGTGGACCGGAGCCATGGGTAACTGGTCCATGTTCACGTGGTGCTTCTGCTTCGCCGT
GACCCTCATCATCCTCATCGTCGAGTTAGCGGGGCTCCAGGCCCGCTTCCCCCTGTCCTG
GCGCAACTTCCCCATCACCTACGCCTGCTACGCCGCCCTCTTCTGCCTCTCGGCCTCCGT
CATCTACCCCACCACCTACGTCCAGTTCTTGTCCCACGGCCGCTCCCGGGACCATGCCAT
CGCCGCAACCGCCTTCTCCTGCATCGCCTGTGTGGCTTATGCCACCGAAGTGGCCTGGAC
CCGGGCCCGGCCCGGCGAGATCACCGGCTACATGGCCACCGTGCCAGGCCTGCTCAAGGT
GCTGGAGACCTTCGTGGCCTGTGTCATCTTCGCCTTCATCAGCAACCCCAACCTGTACCA
GCACCAGCCAGCCCTGGAGTGGTGCGTGGCCGTGTACTCCATCTGCTTCATCCTGGCGGC
TGTGGCCATCCTGCTGAACCTGGGCGACTGCACGAACGTGCTGCCCATCGCCTTCCCCAC
TTTCCTGTCCGGGCTGGCCCTGATCTCCGTCCTCTTCTATGCCACGGCTCTGGTCCTCTG
GCCACTCTACCAGTTCGACCAGAAGTATGGCGGCCATCCCCGGCGGTCCATGGATCCAGG
CTGCGGCGACCGGCACACCTATTACGTGTGCCCCTGGGACCGACGTCTGGCTGTGGCCAT
CCTGACAGCCATCAACCTGCTGGCTTACGTGGCCGACCTGGTGCACTCGGCCCGCCTGGT
CTTTGTCAGGGTCTGAGGCTCCGCCCAGGGGCTCCCCATCCTCTCCCCTCTTCTCAGCTG
AGAGTCTCTCCCGAGTTCCGAGGTCCTCTGATGTCCTCTCTCTGGCTCCCCTCTCTCCTT
CCTGACTCCTCCTGCTCTCTGATCTGTTTCCTTCACCCCTCCACCCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTGCAGCTGTCGCCTCTGCTTCAGCCGCTAACGCCACAGGCCCTTGAGCCTTTTCCAGG
TGTCTGCCTTAATCCGCCTCCAGAGCCGGATCTTTCTCTGGTGGGGTCCTCAGCAAAGGC
CGCTGCCATGCCGGTGACGGTGACCCGTACCACCATCACGACAACCACGTCGTCGTCCTC
GGGCCTGGGCTCCTCGACCATCGTGGGGTCCCCTCGGGCACTGACCCAGCCCCTGGGCCT
CCTCCGCCTGCTGCAGCTGATCTCCACCTGCGTGGCCTTCTCACTGGTGGCCAGCGTGGG
CGCGTGGACCGGAGCCATGGGTAACTGGTCCATGTTCACGTGGTGCTTCTGCTTCGCCGT
GACCCTCATCATCCTCATCGTCGAGTTAGCGGGGCTCCAGGCCCGCTTCCCCCTGTCCTG
GCGCAACTTCCCCATCACCTACGCCTGCTACGCCGCCCTCTTCTGCCTCTCGGCCTCCGT
CATCTACCCCACCACCTACGTCCAGTTCTTGTCCCACGGCCGCTCCCGGGACCATGCCAT
CGCCGCAACCGCCTTCTCCTGCATCGCCTGTGTGGCTTATGCCACCGAAGTGGCCTGGAC
CCGGGCCCGGCCCGGCGAGATCACCGGCTACATGGCCACCGTGCCAGGCCTGCTCAAGGT
GCTGGAGACCTTCGTGGCCTGTGTCATCTTCGCCTTCATCAGCAACCCCAACCTGTACCA
GCACCAGCCAGCCCTGGAGTGGTGCGTGGCCGTGTACTCCATCTGCTTCATCCTGGCGGC
TGTGGCCATCCTGCTGAACCTGGGCGACTGCACGAACGTGCTGCCCATCGCCTTCCCCAC
TTTCCTGTCCGGGCTGGCCCTGATCTCCGTCCTCTTCTATGCCACGGCTCTGGTCCTCTG
GCCACTCTACCAGTTCGACCAGAAGTATGGCGGCCATCCCCGGCGGTCCATGGATCCAGG
CTGCGGCGACCGGCACACCTATTACGTGTGCCCCTGGGACCGACGTCTGGCTGTGGCCAT
CCTGACAGCCATCAACCTGCTGGCTTACGTGGCCGACCTGGTGCACTCGGCCCGCCTGGT
CTTTGTCAGGGTCTGAGGCTCCGCCCAGGGGCTCCCCATCCTCTCCCCTCTTCTCAGCTG
AGAGTCTCTCCCGAGTTCCGAGGTCCTCTGATGTCCTCTCTCTGGCTCCCCTCTCTCCTT
CCTGACTCCTCCTGCTCTCTGATCTGTTTCCTTCACCCCTCCACCCGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|37182286|gb|AAQ88945.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|37182286|gb|AAQ88945.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               839-958, - strand, RNAz p=0.976294

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               839-958, - strand, RNAz p=0.976294

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               24-1240, gnl|bosTau2|chr21 (15043631-15044823)
               

               
               24-1240, gnl|Hg17|chr2 (33864786-33863580)
               

               
               24-1240, gnl|Mm7|chrUn_random (1690362-1689281)
               


               
               120-1208, gnl|bosTau2|chr18 (52844090-52843001)
               

               
               120-1208, gnl|Hg17|chr19 (59068588-59069678)
               

               
               120-1208, gnl|Mm7|chrUn_random (1690367-1689309)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               24-1240, gnl|bosTau2|chr21 (15043631-15044823)
               

               
               24-1240, gnl|Hg17|chr2 (33864786-33863580)
               

               
               24-1240, gnl|Mm7|chrUn_random (1690362-1689281)
               


               
               120-1208, gnl|bosTau2|chr18 (52844090-52843001)
               

               
               120-1208, gnl|Hg17|chr19 (59068588-59069678)
               

               
               120-1208, gnl|Mm7|chrUn_random (1690367-1689309)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               eep (0.245128)
               

               
               pty (0.142714)
               

               
               clu (0.119646)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.245128)
               

               
               pty (0.142714)
               

               
               clu (0.119646)
               

               
               cty (0.10408)

	24-1240, gnl\|bosTau2\|chr21 (15043631-15044823)
	24-1240, gnl\|Hg17\|chr2 (33864786-33863580)
	24-1240, gnl\|Mm7\|chrUn_random (1690362-1689281)

	120-1208, gnl\|bosTau2\|chr18 (52844090-52843001)
	120-1208, gnl\|Hg17\|chr19 (59068588-59069678)
	120-1208, gnl\|Mm7\|chrUn_random (1690367-1689309)