Non-Coding RNA Search

Ss1.1-Lng1-LNG010048B06.5

Sequence:


               
               AGCCGCGGCCCCAACTCGGGAGACATGGCTGGCGTTAAAGGTACACCGGAGGTCCCCGGC
TCGCTGGTCCTTTGGTGGGGTTGTGCCTCGGCTCCGGGCTAAGCCTGGAGCTGCGCCTTC
AGCGCGTGGGCGGGGAACGGCTTCCCCCAGACCCGTCACCCTGCTCGCCTCTCTGGGTGG
GAAGGAGCTCTCCTGCTCCCTTGGCCCCTTGGGGTGCGGGTGGAGGCGTGTTTCGGGCAA
CCTCACCCTTTTTTCTGCAAGACTGCTAGTCTGAGTGCTTTCTCCCGCGTCTCCGGGACG
CTCCACGCGGAGCCCTCGCTGGGAGATCCTGGCTAGCCGTGGAGGCATCACCTCCCTGCT
CCGTCCCAGTTCCTTGGAGCGTCGTCCCACCCGCTCCTATGCCGAGTTTTAAACTAGGTT
TTCACTTCCTGACATGTCCATCCTAACGCCTCTCTTCCCTTTTCCTGCAACTTCGCTGAG
TTTCCCATTTCTTCCAGAGGAGCCATTGTCTCCAGTGTTCCCGGAATTGGGACACTGAAA
TATGTTGTTCCTAATGATTTTTCCAGTTGGGCAGAGTTGGCTTCAAGCGGGTGTCAGCAG
AAAGCACCCTGAAATGCTATGTTTCTCGTAACTGTGGAGAATGGGTGCACGTTGATCGCC
CCTTTTATCAGTGTTTATTCATTTATGGACAGACAAGAAGATAGTGTTTGCGCTGTACTT
GCTTTTGGATGGGGCATTTGATTTTAAAAAAGAGGGTACCAAAAACACCAGTTCCCTCAT
CTACGTGCCTTCAGAGGGACTGGGGATGTGACTGGGAGAGGTCGGAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCCGCGGCCCCAACTCGGGAGACATGGCTGGCGTTAAAGGTACACCGGAGGTCCCCGGC
TCGCTGGTCCTTTGGTGGGGTTGTGCCTCGGCTCCGGGCTAAGCCTGGAGCTGCGCCTTC
AGCGCGTGGGCGGGGAACGGCTTCCCCCAGACCCGTCACCCTGCTCGCCTCTCTGGGTGG
GAAGGAGCTCTCCTGCTCCCTTGGCCCCTTGGGGTGCGGGTGGAGGCGTGTTTCGGGCAA
CCTCACCCTTTTTTCTGCAAGACTGCTAGTCTGAGTGCTTTCTCCCGCGTCTCCGGGACG
CTCCACGCGGAGCCCTCGCTGGGAGATCCTGGCTAGCCGTGGAGGCATCACCTCCCTGCT
CCGTCCCAGTTCCTTGGAGCGTCGTCCCACCCGCTCCTATGCCGAGTTTTAAACTAGGTT
TTCACTTCCTGACATGTCCATCCTAACGCCTCTCTTCCCTTTTCCTGCAACTTCGCTGAG
TTTCCCATTTCTTCCAGAGGAGCCATTGTCTCCAGTGTTCCCGGAATTGGGACACTGAAA
TATGTTGTTCCTAATGATTTTTCCAGTTGGGCAGAGTTGGCTTCAAGCGGGTGTCAGCAG
AAAGCACCCTGAAATGCTATGTTTCTCGTAACTGTGGAGAATGGGTGCACGTTGATCGCC
CCTTTTATCAGTGTTTATTCATTTATGGACAGACAAGAAGATAGTGTTTGCGCTGTACTT
GCTTTTGGATGGGGCATTTGATTTTAAAAAAGAGGGTACCAAAAACACCAGTTCCCTCAT
CTACGTGCCTTCAGAGGGACTGGGGATGTGACTGGGAGAGGTCGGAAG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               40-277, - strand, RNAz p=0.994011
               

               
               317-455, - strand, RNAz p=0.998881

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-277, - strand, RNAz p=0.994011
               

               
               317-455, - strand, RNAz p=0.998881

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               1-720, gnl|bosTau2|chr3 (53552061-53552806)
               

               
               1-720, gnl|Hg17|chr1 (65598405-65599056)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-720, gnl|bosTau2|chr3 (53552061-53552806)
               

               
               1-720, gnl|Hg17|chr1 (65598405-65599056)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               nje (0.16592)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)

	40-277, - strand, RNAz p=0.994011
	317-455, - strand, RNAz p=0.998881

	1-720, gnl\|bosTau2\|chr3 (53552061-53552806)
	1-720, gnl\|Hg17\|chr1 (65598405-65599056)