Non-Coding RNA Search

Ss1.1-Lng1-LNG010048C09.5

Sequence:


               
               AGGACTGTGGGGTTAAGGACACAGTGTAACTGCAACTCAGATCTGATCCCTGGCCCAGGA
GCTTCCATATGCTGCTGGGCAGCCAGAAAAGGGGGGAAAAAAAACAAAAAAGCTGCTCTG
AGATTCACATTCTTTAGCACTTGAAGTGATTTGATTTATTTGAAAAACAAATGGTTGAAG
AGTTGCTCGTTCTTTGTTCGCCCAGGAGAAGCTCATAGTGTCCAACGAGCAGGAGGTCCT
GCGGGTGCACTACAGGGCTGCCAGGACGCTGGCCAACCAGACACTGCCCTTCAGTGCATG
CACTGTCCTCCTGGACGCCGAGGTGTACAGCGTGCCTCTGGACGCTCAGGTAAGGGGCCT
GCCACTGCAGTCTTGGGGCCTTTCACACAGCGTGCCTGCTTTGTAACCTGTTCCTCAGGA
GAAATTTGAAAGCAGTAAAGCTCAAAGGAGAAAACAACTCTTTCAGACTAAAGTACTTGC
AAGTCACCTGGTCCTCTATTTTCTAAAATCTTCTAAATATTAGGTTTGTGCCATAAAAAC
AGATAATTATGAAACTTAAGCATGTGCTTAGGATAGTGTCATTTTAAACATAACTTGTAG
CGTGTTTCTGAAGCAGGTGTTTATACCTTGACTCTGACCTTCACACAACTGGAAGCTACA
GGCAGTAAGAGGGGACAGCAGGCAGAACCTCGGTGCAGTGTTGAAATAGGCCAGGCTTTG
AATCCTGGGTGTTACTGGGATAAATTAACATGCTTGCGAACAAAATGTATCTATTTCTTG
AAAAAGTTTACTGTCACCTATAAATTAAATGAATTCAGAACCAGACATCAGTTGTCAGAA
TTTTTTTTGTGCTTCATAAACCAGAATAAAATTTATTGGTCATAAGAGAGAATATAAAAG
TGTGAATACAGATAATGAAGGATTATCACCAAAAAAGTCTAGGAAATGCTGTTTCAAATC
AAACTATAGAAACACAAGGGCATAAGGTATATTACAAAGAAAGTTCTCTCTGGATTTTTT
TTTTCATCTGTTTAAAAAAAAAAAAAAAAGAAGGCCCTAATGGGTTATAATTTCCAAAAA
TAAGTGAATTTTCCCACACTTAAGAGAGCTGCCAAAGAGCAGGATGGAGCAGATCCCAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGACTGTGGGGTTAAGGACACAGTGTAACTGCAACTCAGATCTGATCCCTGGCCCAGGA
GCTTCCATATGCTGCTGGGCAGCCAGAAAAGGGGGGAAAAAAAACAAAAAAGCTGCTCTG
AGATTCACATTCTTTAGCACTTGAAGTGATTTGATTTATTTGAAAAACAAATGGTTGAAG
AGTTGCTCGTTCTTTGTTCGCCCAGGAGAAGCTCATAGTGTCCAACGAGCAGGAGGTCCT
GCGGGTGCACTACAGGGCTGCCAGGACGCTGGCCAACCAGACACTGCCCTTCAGTGCATG
CACTGTCCTCCTGGACGCCGAGGTGTACAGCGTGCCTCTGGACGCTCAGGTAAGGGGCCT
GCCACTGCAGTCTTGGGGCCTTTCACACAGCGTGCCTGCTTTGTAACCTGTTCCTCAGGA
GAAATTTGAAAGCAGTAAAGCTCAAAGGAGAAAACAACTCTTTCAGACTAAAGTACTTGC
AAGTCACCTGGTCCTCTATTTTCTAAAATCTTCTAAATATTAGGTTTGTGCCATAAAAAC
AGATAATTATGAAACTTAAGCATGTGCTTAGGATAGTGTCATTTTAAACATAACTTGTAG
CGTGTTTCTGAAGCAGGTGTTTATACCTTGACTCTGACCTTCACACAACTGGAAGCTACA
GGCAGTAAGAGGGGACAGCAGGCAGAACCTCGGTGCAGTGTTGAAATAGGCCAGGCTTTG
AATCCTGGGTGTTACTGGGATAAATTAACATGCTTGCGAACAAAATGTATCTATTTCTTG
AAAAAGTTTACTGTCACCTATAAATTAAATGAATTCAGAACCAGACATCAGTTGTCAGAA
TTTTTTTTGTGCTTCATAAACCAGAATAAAATTTATTGGTCATAAGAGAGAATATAAAAG
TGTGAATACAGATAATGAAGGATTATCACCAAAAAAGTCTAGGAAATGCTGTTTCAAATC
AAACTATAGAAACACAAGGGCATAAGGTATATTACAAAGAAAGTTCTCTCTGGATTTTTT
TTTTCATCTGTTTAAAAAAAAAAAAAAAAGAAGGCCCTAATGGGTTATAATTTCCAAAAA
TAAGTGAATTTTCCCACACTTAAGAGAGCTGCCAAAGAGCAGGATGGAGCAGATCCCAAG

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               108-951, gnl|bosTau2|chr24 (28981870-28982713)
               

               
               108-951, gnl|Hg17|chr18 (9264783-9266287)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               108-951, gnl|bosTau2|chr24 (28981870-28982713)
               

               
               108-951, gnl|Hg17|chr18 (9264783-9266287)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               cki (0.330469)
               

               
               cje (0.165235)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.330469)
               

               
               cje (0.165235)

	108-951, gnl\|bosTau2\|chr24 (28981870-28982713)
	108-951, gnl\|Hg17\|chr18 (9264783-9266287)