Non-Coding RNA Search

Ss1.1-Lng1-LNG010048E01.5

Sequence:


               
               ACAGATCTAGCAGAAGCATCCTAGGCCACTGTCCCAGGCTCCAAAGTGAGGATGTGGGAA
GGAGATGCCACTGGGTGTGGAAGTGCCACCACCTGCACTCATGTCTAATGGGCTGACTGC
CAGCCTTTGCCGTGCACGTCACCACTGTAGGAATCCCTGCGTTGTGAGAGCTGCTGGCCC
TCGGTTCTTGTGTTCAGGGAGACAACTTGGTCACCATGAGCTCAGCAGACCTGCCTGTCC
ATCAGCAGTTCTGGTCTAGACTGCAGGTCCCCAGACACTTCATGGGAATCATGTGGAGAG
CTCCCCTTTGGACGTTACTGAGTTGTTGGCCTAAATCTTGGTCTCTGTTTGAGTCAGCCT
CTGGTTCTCAAGCTCAGTGATCAGAGCCAGTGACAAAAGGGTGAGTGACCTATAGCTTCG
TTTCAGAAAGAACAGCCCCACTGATGTTGGCTTCCCTCCTGTTGTGTCCCATGCACCTGG
TCCCCAGGCCAGCAGCGGGCACACTGGTGCCTATAGAAGGCATAGAGGACTCTGCCTCCC
TAGGCCTTGGTCCCAGCCTGCCTGTAGCATTGGTTTTATGATGCGATCCCCCTTCCCCAG
TCCCATCTTTTCAATCTTGAGTTTGCTCTTGACCTTGACAATCAGCCCCCCCATCCCAGA
ATGTAGTGGCCTTTGAGAACAGGTCCCTGCAATGAAGATCTCTCCTTTGCTCCCATTTCC
ATCCTAGCAAATGGGCTGGACCACAGGAGGCAGGAGAGAAAGAGGAAGAATTATCATTTT
AAAGCAGAAATATGGATGGAGCATGTTGGAGGCAAGTGAGAGGCACGTTGGTGAGATGAG
TGTGCGTGTTCGGGGAGGCTGCAGCTTACCGTCCCTTCCCTGGGAAGGTGGCTTCCAGAA
GAAAGTGCCTTCTAGGCAGAAAGGGAAGAGTGTGAGAAGCCTGAGAGAGTCTGGAGTTTT
GTCTTTATTAGAAGGAAAAAGTTTCTGAATGTTTTCAGGAGGAAGAGAGCAGGTAGGGAA
TTTAATGGTTCAGCATCCAAGGATCCAGCCAGAACAGGTTGGAAAAGCCCCAAGATTTGG
CTGTAGAAGAAGATGGCCTGAGGAAATAGCCACATGCTAGGCTACAAGCTGGGTTCTCAG
CAGGTTCTTAATGGCCACTGATTTGCTTAGCGGAGAGGGGAAGTTGCCAGCAACAGACCC
ATCTCTGAGTCTGGAGGCCCTGGCTCCAGAGCCTTCATCCGTTTCCCAGGTTCCAGGCTG
TTGTGCCCACCTTCCTTTCTTTGTCCAGTCCAGAGCTGGCCTCTCTAACTGCTTGAATCT
GAGACCAGTAACCGTAATGGGTCATGCACTAGGGACCCACCACCCCAAACTGGAGTCCCA
GGGCCCAGACACCATCATGGGTATCTGGGAGGAAGGCACCCTCACTTGCTCTTCTAATGA
TTCAGTGTGCCGAGCCAGCCTGCCTGGTGTGACTCAGAAGATGGGATGCGAGGTACACAT
CATTTTTAGTGGCCTATGACCAAGGCATACTGCTCTTAAGTCTTTCAGAGAAAGATGGGT
AAACAAAGCCACCATTCTTGAATCTGCAGCATGTTCTTGGCAACAGGTTTCCTTTAAGTC
CTTGACACAGGATGGGAAAAGGGTTTCACTCTGGTTACAGGAGCTCTGCAGGAAAGTGAC
TTTGGAGAAGGCAAATGTGAGGGGCAGGTTCGTGAGCCTGGGTTTGTGGGCCGCGTGGTT
GCACGTAAACTGCTAGATGTCTCTGGGGCGTTCTTCACGGTGTCCCCTCGACCCCTCCCA
GCTCCTGGTGGGCTCTGCAGGGTCTGAAGGAGGCTGTTCCCTCTTCCTCCCTCAACAGAG
AAACCGAAGAAAAGGACTTTGAATTCAGTGCAGTCAATTTGAGTGCTAGAAAATTTCCAG
AATCAATGGTGGTGCTATACTGTCTCCATGTTTCTAAGATTTTTAATTGTGTTTTTTTTT
TTAATTGTTCTCATCACAAACACGCAGCGTCCTTAGGGAAGAGACCCCACCCCTTGACCT
GCCACTTTCCAGGTGTCCTTTATCATTTTGACGGGACTCTTTGGTCTGCAGAAAATAACT
GTCTTGGCATGCTTCTAGACTGTAAAATTTGGGTTGTTTTGTATTTTGTTTATGTTTACA
TGCATCTTGTATTTCCTTGAAAACTAAATAAAGTTTTTGGCCTTTTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGATCTAGCAGAAGCATCCTAGGCCACTGTCCCAGGCTCCAAAGTGAGGATGTGGGAA
GGAGATGCCACTGGGTGTGGAAGTGCCACCACCTGCACTCATGTCTAATGGGCTGACTGC
CAGCCTTTGCCGTGCACGTCACCACTGTAGGAATCCCTGCGTTGTGAGAGCTGCTGGCCC
TCGGTTCTTGTGTTCAGGGAGACAACTTGGTCACCATGAGCTCAGCAGACCTGCCTGTCC
ATCAGCAGTTCTGGTCTAGACTGCAGGTCCCCAGACACTTCATGGGAATCATGTGGAGAG
CTCCCCTTTGGACGTTACTGAGTTGTTGGCCTAAATCTTGGTCTCTGTTTGAGTCAGCCT
CTGGTTCTCAAGCTCAGTGATCAGAGCCAGTGACAAAAGGGTGAGTGACCTATAGCTTCG
TTTCAGAAAGAACAGCCCCACTGATGTTGGCTTCCCTCCTGTTGTGTCCCATGCACCTGG
TCCCCAGGCCAGCAGCGGGCACACTGGTGCCTATAGAAGGCATAGAGGACTCTGCCTCCC
TAGGCCTTGGTCCCAGCCTGCCTGTAGCATTGGTTTTATGATGCGATCCCCCTTCCCCAG
TCCCATCTTTTCAATCTTGAGTTTGCTCTTGACCTTGACAATCAGCCCCCCCATCCCAGA
ATGTAGTGGCCTTTGAGAACAGGTCCCTGCAATGAAGATCTCTCCTTTGCTCCCATTTCC
ATCCTAGCAAATGGGCTGGACCACAGGAGGCAGGAGAGAAAGAGGAAGAATTATCATTTT
AAAGCAGAAATATGGATGGAGCATGTTGGAGGCAAGTGAGAGGCACGTTGGTGAGATGAG
TGTGCGTGTTCGGGGAGGCTGCAGCTTACCGTCCCTTCCCTGGGAAGGTGGCTTCCAGAA
GAAAGTGCCTTCTAGGCAGAAAGGGAAGAGTGTGAGAAGCCTGAGAGAGTCTGGAGTTTT
GTCTTTATTAGAAGGAAAAAGTTTCTGAATGTTTTCAGGAGGAAGAGAGCAGGTAGGGAA
TTTAATGGTTCAGCATCCAAGGATCCAGCCAGAACAGGTTGGAAAAGCCCCAAGATTTGG
CTGTAGAAGAAGATGGCCTGAGGAAATAGCCACATGCTAGGCTACAAGCTGGGTTCTCAG
CAGGTTCTTAATGGCCACTGATTTGCTTAGCGGAGAGGGGAAGTTGCCAGCAACAGACCC
ATCTCTGAGTCTGGAGGCCCTGGCTCCAGAGCCTTCATCCGTTTCCCAGGTTCCAGGCTG
TTGTGCCCACCTTCCTTTCTTTGTCCAGTCCAGAGCTGGCCTCTCTAACTGCTTGAATCT
GAGACCAGTAACCGTAATGGGTCATGCACTAGGGACCCACCACCCCAAACTGGAGTCCCA
GGGCCCAGACACCATCATGGGTATCTGGGAGGAAGGCACCCTCACTTGCTCTTCTAATGA
TTCAGTGTGCCGAGCCAGCCTGCCTGGTGTGACTCAGAAGATGGGATGCGAGGTACACAT
CATTTTTAGTGGCCTATGACCAAGGCATACTGCTCTTAAGTCTTTCAGAGAAAGATGGGT
AAACAAAGCCACCATTCTTGAATCTGCAGCATGTTCTTGGCAACAGGTTTCCTTTAAGTC
CTTGACACAGGATGGGAAAAGGGTTTCACTCTGGTTACAGGAGCTCTGCAGGAAAGTGAC
TTTGGAGAAGGCAAATGTGAGGGGCAGGTTCGTGAGCCTGGGTTTGTGGGCCGCGTGGTT
GCACGTAAACTGCTAGATGTCTCTGGGGCGTTCTTCACGGTGTCCCCTCGACCCCTCCCA
GCTCCTGGTGGGCTCTGCAGGGTCTGAAGGAGGCTGTTCCCTCTTCCTCCCTCAACAGAG
AAACCGAAGAAAAGGACTTTGAATTCAGTGCAGTCAATTTGAGTGCTAGAAAATTTCCAG
AATCAATGGTGGTGCTATACTGTCTCCATGTTTCTAAGATTTTTAATTGTGTTTTTTTTT
TTAATTGTTCTCATCACAAACACGCAGCGTCCTTAGGGAAGAGACCCCACCCCTTGACCT
GCCACTTTCCAGGTGTCCTTTATCATTTTGACGGGACTCTTTGGTCTGCAGAAAATAACT
GTCTTGGCATGCTTCTAGACTGTAAAATTTGGGTTGTTTTGTATTTTGTTTATGTTTACA
TGCATCTTGTATTTCCTTGAAAACTAAATAAAGTTTTTGGCCTTTTTA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               862-969, - strand, RNAz p=0.999935
               

               
               1001-1153, - strand, RNAz p=0.83062
               

               
               1271-1429, - strand, RNAz p=0.733932

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               862-969, - strand, RNAz p=0.999935
               

               
               1001-1153, - strand, RNAz p=0.83062
               

               
               1271-1429, - strand, RNAz p=0.733932

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1440, gnl|bosTau2|chr26 (15829020-15830490)
               

               
               1-1440, gnl|Hg17|chr10 (105346130-105344622)
               

               
               1-1440, gnl|Mm7|chr19 (47162699-47161439)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1440, gnl|bosTau2|chr26 (15829020-15830490)
               

               
               1-1440, gnl|Hg17|chr10 (105346130-105344622)
               

               
               1-1440, gnl|Mm7|chr19 (47162699-47161439)

Expressed library(ies): 18 entry(ies)

More info

Expressed library(ies): 18 entry(ies)

Help | Less info


               
               aor (0.390549)
               

               
               elu (0.385356)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               cty (0.20816)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.390549)
               

               
               elu (0.385356)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               cty (0.20816)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

	862-969, - strand, RNAz p=0.999935
	1001-1153, - strand, RNAz p=0.83062
	1271-1429, - strand, RNAz p=0.733932

	1-1440, gnl\|bosTau2\|chr26 (15829020-15830490)
	1-1440, gnl\|Hg17\|chr10 (105346130-105344622)
	1-1440, gnl\|Mm7\|chr19 (47162699-47161439)

	aor (0.390549)
	elu (0.385356)
	ece (0.229305)
	mas (0.210305)
	cty (0.20816)
	gul (0.177588)
	ill (0.175593)
	cut (0.169924)
	fhi (0.169578)
	fat (0.147427)
	hyp (0.142837)
	pty (0.142714)
	cst (0.140036)
	pla (0.133672)
	ese (0.126502)
	eep (0.122564)
	eru (0.120048)
	ebs (0.118301)