Non-Coding RNA Search

Ss1.1-Lng1-LNG010048E12.5

Sequence:


               
               AGGGCGCCGAGTCGGTGTGTACGTCCGTTGCCGTAACAACGGGAAGCGGAGTCCATCGGC
GATGGCCTCTAACTTTAAGAAGACAAACGTGGCATCTGCTGCCCAGCGAAAAAGGATGAG
CCCTAAACCAGAGCTTACTGAAGAGCAGAAACAGGAAATCCGAGAAGCTTTTGATCTCTT
TGATGCTGATGGAACTGGGACAATAGATGTTAAAGAACTTAAGGTGGCAATGAGGGCACT
GGGCTTTGAACCCAAGAAAGAAGAGATCAAGAAAATGATAAGTGAAATCGATAAGGAAGG
GACAGGAAAAATGAACTTCAGTGACTTTTTAACTGTGATGACTCAGAAAATGTCTGAGAA
GGATACCAAAGAAGAAATCCTGAAAGCTTTCAAGCTCTTCGATGACGATGAAACTGGGAA
GATATCGTTCAAGAATCTAAAACGCGTGGCCAAGGAGTTGGGCGAGAACCTCACTGACGA
GGAGCTGCAGGAAATGATTGATGAAGCTGATCGCGATGGGGACGGAGAAGTCAATGAGCA
AGAGTTCCTGCGCATCATGAAGAAGACCAGTCTTTATTAAGCTCGGTCTCTTTCCTACCG
CAAGCACCTGGAACTAGACTGAGTGCCTGCCATTGTGTGAAACCTGGTTTTTGAGAACAT
AAATTACTTCTCCCCCACTGACCTCTCTGTCTAACAACTTCAGTGACAGCGTCGAATCCA
TTTTAGACTTTCGAAAGTATTCTTTGACATTACAGTCCTTTGTAAGGAGACCTGCTGATG
GCATGTTAGAGTGGAGAAAAGGGTCTTCAGGCTTTTGCCCACCTGCCATTCTGCCTTGTG
TCACTTAACTCCTGTCATGCATTCCCACATTTGTGCCACCCACCGCAGAACAACTTCTTA
ACAAGCACATGTTGTACCTGTGTCCCCACGAGCAAGGGACATCTCTTTGATGGTTCCCGT
TGTCATTGACACCTGAGTGCAGCTTTCTCTTTTATAAAACCCAGTGAACTCTCATGTGCA
CTTGGGGGTGTGTGTGTGTGTGTATGCGCACACGTGCGTGTGCTGTTTGTTTTGTCTTAA
AATAAAGCCTTTCTTATTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGGCGCCGAGTCGGTGTGTACGTCCGTTGCCGTAACAACGGGAAGCGGAGTCCATCGGC
GATGGCCTCTAACTTTAAGAAGACAAACGTGGCATCTGCTGCCCAGCGAAAAAGGATGAG
CCCTAAACCAGAGCTTACTGAAGAGCAGAAACAGGAAATCCGAGAAGCTTTTGATCTCTT
TGATGCTGATGGAACTGGGACAATAGATGTTAAAGAACTTAAGGTGGCAATGAGGGCACT
GGGCTTTGAACCCAAGAAAGAAGAGATCAAGAAAATGATAAGTGAAATCGATAAGGAAGG
GACAGGAAAAATGAACTTCAGTGACTTTTTAACTGTGATGACTCAGAAAATGTCTGAGAA
GGATACCAAAGAAGAAATCCTGAAAGCTTTCAAGCTCTTCGATGACGATGAAACTGGGAA
GATATCGTTCAAGAATCTAAAACGCGTGGCCAAGGAGTTGGGCGAGAACCTCACTGACGA
GGAGCTGCAGGAAATGATTGATGAAGCTGATCGCGATGGGGACGGAGAAGTCAATGAGCA
AGAGTTCCTGCGCATCATGAAGAAGACCAGTCTTTATTAAGCTCGGTCTCTTTCCTACCG
CAAGCACCTGGAACTAGACTGAGTGCCTGCCATTGTGTGAAACCTGGTTTTTGAGAACAT
AAATTACTTCTCCCCCACTGACCTCTCTGTCTAACAACTTCAGTGACAGCGTCGAATCCA
TTTTAGACTTTCGAAAGTATTCTTTGACATTACAGTCCTTTGTAAGGAGACCTGCTGATG
GCATGTTAGAGTGGAGAAAAGGGTCTTCAGGCTTTTGCCCACCTGCCATTCTGCCTTGTG
TCACTTAACTCCTGTCATGCATTCCCACATTTGTGCCACCCACCGCAGAACAACTTCTTA
ACAAGCACATGTTGTACCTGTGTCCCCACGAGCAAGGGACATCTCTTTGATGGTTCCCGT
TGTCATTGACACCTGAGTGCAGCTTTCTCTTTTATAAAACCCAGTGAACTCTCATGTGCA
CTTGGGGGTGTGTGTGTGTGTGTATGCGCACACGTGCGTGTGCTGTTTGTTTTGTCTTAA
AATAAAGCCTTTCTTATTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|10257421|ref|NP_062278.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|10257421|ref|NP_062278.2|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               220-459, - strand, RNAz p=0.988649
               

               
               821-940, - strand, RNAz p=0.944414

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               220-459, - strand, RNAz p=0.988649
               

               
               821-940, - strand, RNAz p=0.944414

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               61-578, gnl|bosTau2|chr24 (25919321-25919838)
               

               
               61-578, gnl|Hg17|chr18 (570408-570925)
               

               
               61-578, gnl|Mm7|chr18 (9825972-9825458)
               


               
               134-560, gnl|bosTau2|chr18 (40054621-40055047)
               

               
               134-560, gnl|Hg17|chr10 (71593459-71593880)
               

               
               134-560, gnl|Mm7|chrX (43102286-43102710)
               


               
               781-1099, gnl|bosTau2|chrX (12120333-12120033)
               

               
               781-1099, gnl|Hg17|chrX (151666727-151666442)
               

               
               781-1099, gnl|Mm7|chrX (68300644-68300355)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               61-578, gnl|bosTau2|chr24 (25919321-25919838)
               

               
               61-578, gnl|Hg17|chr18 (570408-570925)
               

               
               61-578, gnl|Mm7|chr18 (9825972-9825458)
               


               
               134-560, gnl|bosTau2|chr18 (40054621-40055047)
               

               
               134-560, gnl|Hg17|chr10 (71593459-71593880)
               

               
               134-560, gnl|Mm7|chrX (43102286-43102710)
               


               
               781-1099, gnl|bosTau2|chrX (12120333-12120033)
               

               
               781-1099, gnl|Hg17|chrX (151666727-151666442)
               

               
               781-1099, gnl|Mm7|chrX (68300644-68300355)

Expressed library(ies): 40 entry(ies)

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Expressed library(ies): 40 entry(ies)

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               cte (1.17096)
               

               
               nms (0.427716)
               

               
               amn (0.417711)
               

               
               tra (0.369276)
               

               
               nep (0.36785)
               

               
               tbr (0.308356)
               

               
               liv (0.292569)
               

               
               spl (0.286369)
               

               
               ssp (0.271039)
               

               
               ova (0.258264)
               

               
               ese (0.253004)
               

               
               eru (0.240096)
               

               
               ece (0.229305)
               

               
               cty (0.20816)
               

               
               tes (0.207814)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               ctl (0.153069)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               clu (0.119646)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 40 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (1.17096)
               

               
               nms (0.427716)
               

               
               amn (0.417711)
               

               
               tra (0.369276)
               

               
               nep (0.36785)
               

               
               tbr (0.308356)
               

               
               liv (0.292569)
               

               
               spl (0.286369)
               

               
               ssp (0.271039)
               

               
               ova (0.258264)
               

               
               ese (0.253004)
               

               
               eru (0.240096)
               

               
               ece (0.229305)
               

               
               cty (0.20816)
               

               
               tes (0.207814)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               ctl (0.153069)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               clu (0.119646)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	220-459, - strand, RNAz p=0.988649
	821-940, - strand, RNAz p=0.944414

	61-578, gnl\|bosTau2\|chr24 (25919321-25919838)
	61-578, gnl\|Hg17\|chr18 (570408-570925)
	61-578, gnl\|Mm7\|chr18 (9825972-9825458)

	134-560, gnl\|bosTau2\|chr18 (40054621-40055047)
	134-560, gnl\|Hg17\|chr10 (71593459-71593880)
	134-560, gnl\|Mm7\|chrX (43102286-43102710)

	781-1099, gnl\|bosTau2\|chrX (12120333-12120033)
	781-1099, gnl\|Hg17\|chrX (151666727-151666442)
	781-1099, gnl\|Mm7\|chrX (68300644-68300355)

	cte (1.17096)
	nms (0.427716)
	amn (0.417711)
	tra (0.369276)
	nep (0.36785)
	tbr (0.308356)
	liv (0.292569)
	spl (0.286369)
	ssp (0.271039)
	ova (0.258264)
	ese (0.253004)
	eru (0.240096)
	ece (0.229305)
	cty (0.20816)
	tes (0.207814)
	nlu (0.191681)
	cmu (0.186393)
	fbs (0.175346)
	mcp (0.170648)
	fhi (0.169578)
	nje (0.16592)
	ctl (0.153069)
	lun (0.150489)
	fat (0.147427)
	ski (0.146735)
	hyp (0.142837)
	hlv (0.139256)
	ste (0.135208)
	pla (0.133672)
	lyg (0.133103)
	nmm (0.132802)
	cov (0.132153)
	kid (0.129735)
	ret (0.128733)
	thg (0.126791)
	bla (0.124347)
	eep (0.122564)
	clu (0.119646)
	spc (0.113366)
	eje (0.0988338)