Non-Coding RNA Search

Ss1.1-Lng1-LNG010048F09.5

Sequence:


               
               TGGCGCGCAGCCTGATAATTCCTCATGGCGGCGGCTGTGGCTGGTTGGGCGCGGCACAGT
GGTGACTGACCTCCTAGCCTGGTAGCCGGGCAAAGAGCTCCAGCCTAGCCTCCGCTTGCC
CCCCGCCCCGGGCGCCGCACGGCTGATGCTGCGCGGGTGCTGAGCCCGCCCCGGCCGGGA
CGATGGTGAAGTATTTCCTGGGCCAGAGCGTGCTCCGGAGTTCCTGGGACCAAGTGTTTG
CTGCCTTCTGGCAGCGGTACCCGAATCCCTATAGCAAACATGTCTTGACGGAAGACATAG
TGCACCGGGAAGTGACCCCTGACCAGAAGCTCCTGTCCCGGCGACTCCTGACCAAGACAA
ACAGGATGCCCCGCTGGGCTGAGCGACTGTTTCCTGCCAATGTTGCTCACTCAGTGTACA
TCCTGGAGGATTCTATCGTGGACCCACAGAACCAGACCATGACCACCTTCACCTGGAACA
TCAACCACGCCCGGCTGATGGTGGTGGAGGAACGATGTGTTTACCGTGTGAACTCTGATA
ACAACAGCTGGACCGAAATCCGCCGGGAAGCCTGGGTCTCCTCTAGCTTATTTGGTGTCT
CCAGAGCTGTGCAGGAATTTGGTCTCGCCCGGTTCAAAAGCAACGTGACCAAGACTATGA
AGGGTTTTGAATACATCTTGGCCAAGCTGCAAGGTGAGGCCCCTCCCAAAACCCTTGTTG
AAACAGCCAAGGAAGCCAAGGAGAAGGCCAAAGAGACGGCACTGGCAGCTACAGAGAAGG
CCAAGGACCTTGCCAGCAAGGCAGCCACCAAGAAGCAGCAGCAGCAGCAGCAGTTTGTGT
AGCCAGCCCAGGCCCTGGGGCGACAGCACAGCAGACCACTGGCCCCAGTCCCTGTGCCCT
CTCCCCCTTGTACTTATTAAAAGTCAACTTCCAGCCCGGCTGTTTGGGTGGTGGGCAGGG
GGTGTTGTCCCATTTGGCATCTCCAACGCACCAGGCCAATTGCCCATACCTGAGCTGGGC
CTCCTTATTCCTGCATCACGTGGCTGAAGGCAGAGGCGCAGTGACTTGGCCCATGGTCAT
GGTGTCCAGGTGAAGTCATAAATGCTAGACTATAAGTTCGATGAGGGCAGGGACCTGTTT
TATTTTCTGTTGTGTCCCAAATACCTGGAACAAAATCTAGCACATAACAGGCATTCAATA
AATACTGTTGAATTTAATCAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCGCGCAGCCTGATAATTCCTCATGGCGGCGGCTGTGGCTGGTTGGGCGCGGCACAGT
GGTGACTGACCTCCTAGCCTGGTAGCCGGGCAAAGAGCTCCAGCCTAGCCTCCGCTTGCC
CCCCGCCCCGGGCGCCGCACGGCTGATGCTGCGCGGGTGCTGAGCCCGCCCCGGCCGGGA
CGATGGTGAAGTATTTCCTGGGCCAGAGCGTGCTCCGGAGTTCCTGGGACCAAGTGTTTG
CTGCCTTCTGGCAGCGGTACCCGAATCCCTATAGCAAACATGTCTTGACGGAAGACATAG
TGCACCGGGAAGTGACCCCTGACCAGAAGCTCCTGTCCCGGCGACTCCTGACCAAGACAA
ACAGGATGCCCCGCTGGGCTGAGCGACTGTTTCCTGCCAATGTTGCTCACTCAGTGTACA
TCCTGGAGGATTCTATCGTGGACCCACAGAACCAGACCATGACCACCTTCACCTGGAACA
TCAACCACGCCCGGCTGATGGTGGTGGAGGAACGATGTGTTTACCGTGTGAACTCTGATA
ACAACAGCTGGACCGAAATCCGCCGGGAAGCCTGGGTCTCCTCTAGCTTATTTGGTGTCT
CCAGAGCTGTGCAGGAATTTGGTCTCGCCCGGTTCAAAAGCAACGTGACCAAGACTATGA
AGGGTTTTGAATACATCTTGGCCAAGCTGCAAGGTGAGGCCCCTCCCAAAACCCTTGTTG
AAACAGCCAAGGAAGCCAAGGAGAAGGCCAAAGAGACGGCACTGGCAGCTACAGAGAAGG
CCAAGGACCTTGCCAGCAAGGCAGCCACCAAGAAGCAGCAGCAGCAGCAGCAGTTTGTGT
AGCCAGCCCAGGCCCTGGGGCGACAGCACAGCAGACCACTGGCCCCAGTCCCTGTGCCCT
CTCCCCCTTGTACTTATTAAAAGTCAACTTCCAGCCCGGCTGTTTGGGTGGTGGGCAGGG
GGTGTTGTCCCATTTGGCATCTCCAACGCACCAGGCCAATTGCCCATACCTGAGCTGGGC
CTCCTTATTCCTGCATCACGTGGCTGAAGGCAGAGGCGCAGTGACTTGGCCCATGGTCAT
GGTGTCCAGGTGAAGTCATAAATGCTAGACTATAAGTTCGATGAGGGCAGGGACCTGTTT
TATTTTCTGTTGTGTCCCAAATACCTGGAACAAAATCTAGCACATAACAGGCATTCAATA
AATACTGTTGAATTTAATCAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q549N2_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q549N2_HUMAN

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               126-440, - strand, RNAz p=0.9724
               

               
               224-754, - strand, RNAz p=0.995102

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               126-440, - strand, RNAz p=0.9724
               

               
               224-754, - strand, RNAz p=0.995102

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               17-754, gnl|bosTau2|chr21 (37343884-37343148)
               

               
               17-754, gnl|Hg17|chr1 (207768820-207769580)
               

               
               17-754, gnl|Mm7|chr1 (63606163-63605428)
               


               
               189-535, gnl|bosTau2|chr11 (9881081-9881414)
               

               
               189-535, gnl|Hg17|chr2 (70994840-70995185)
               

               
               189-535, gnl|Mm7|chr1 (63606021-63605675)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-754, gnl|bosTau2|chr21 (37343884-37343148)
               

               
               17-754, gnl|Hg17|chr1 (207768820-207769580)
               

               
               17-754, gnl|Mm7|chr1 (63606163-63605428)
               


               
               189-535, gnl|bosTau2|chr11 (9881081-9881414)
               

               
               189-535, gnl|Hg17|chr2 (70994840-70995185)
               

               
               189-535, gnl|Mm7|chr1 (63606021-63605675)

Expressed library(ies): 38 entry(ies)

More info

Expressed library(ies): 38 entry(ies)

Help | Less info


               
               cga (0.837287)
               

               
               nje (0.8296)
               

               
               ill (0.702371)
               

               
               duo (0.691204)
               

               
               cag (0.604778)
               

               
               jej (0.593531)
               

               
               col (0.585023)
               

               
               pty (0.570858)
               

               
               jca (0.569801)
               

               
               pro (0.512033)
               

               
               eje (0.494169)
               

               
               nco (0.485201)
               

               
               cly (0.482567)
               

               
               nms (0.427716)
               

               
               pla (0.401016)
               

               
               nmm (0.398406)
               

               
               nep (0.36785)
               

               
               fty (0.351679)
               

               
               cli (0.305623)
               

               
               hyp (0.285673)
               

               
               lnt (0.284616)
               

               
               nca (0.273748)
               

               
               ute (0.265569)
               

               
               cov (0.264306)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               cty (0.20816)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               ton (0.1755)
               

               
               csp (0.161186)
               

               
               eli (0.151814)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

Expressed library(ies): 38 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.837287)
               

               
               nje (0.8296)
               

               
               ill (0.702371)
               

               
               duo (0.691204)
               

               
               cag (0.604778)
               

               
               jej (0.593531)
               

               
               col (0.585023)
               

               
               pty (0.570858)
               

               
               jca (0.569801)
               

               
               pro (0.512033)
               

               
               eje (0.494169)
               

               
               nco (0.485201)
               

               
               cly (0.482567)
               

               
               nms (0.427716)
               

               
               pla (0.401016)
               

               
               nmm (0.398406)
               

               
               nep (0.36785)
               

               
               fty (0.351679)
               

               
               cli (0.305623)
               

               
               hyp (0.285673)
               

               
               lnt (0.284616)
               

               
               nca (0.273748)
               

               
               ute (0.265569)
               

               
               cov (0.264306)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               cty (0.20816)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               ton (0.1755)
               

               
               csp (0.161186)
               

               
               eli (0.151814)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

	126-440, - strand, RNAz p=0.9724
	224-754, - strand, RNAz p=0.995102

	17-754, gnl\|bosTau2\|chr21 (37343884-37343148)
	17-754, gnl\|Hg17\|chr1 (207768820-207769580)
	17-754, gnl\|Mm7\|chr1 (63606163-63605428)

	189-535, gnl\|bosTau2\|chr11 (9881081-9881414)
	189-535, gnl\|Hg17\|chr2 (70994840-70995185)
	189-535, gnl\|Mm7\|chr1 (63606021-63605675)

	cga (0.837287)
	nje (0.8296)
	ill (0.702371)
	duo (0.691204)
	cag (0.604778)
	jej (0.593531)
	col (0.585023)
	pty (0.570858)
	jca (0.569801)
	pro (0.512033)
	eje (0.494169)
	nco (0.485201)
	cly (0.482567)
	nms (0.427716)
	pla (0.401016)
	nmm (0.398406)
	nep (0.36785)
	fty (0.351679)
	cli (0.305623)
	hyp (0.285673)
	lnt (0.284616)
	nca (0.273748)
	ute (0.265569)
	cov (0.264306)
	ebs (0.236602)
	ece (0.229305)
	cty (0.20816)
	nlu (0.191681)
	sag (0.182715)
	ton (0.1755)
	csp (0.161186)
	eli (0.151814)
	eep (0.122564)
	eru (0.120048)
	clu (0.119646)
	pgl (0.118483)
	ecc (0.115035)
	nbm (0.0993246)