Ss1.1-Lng1-LNG010048G01.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
TCCCGGCCCAGCCCCTCCCTACCCGGGTTTCAGCACGGCGCCGGCCGCAGTCTGACAGAC ACAAGACGGAGCCAAGATGGCGGCGGCCGACGGCGATGACTCGCTCTACCCCATCGCGGT GCTCATAGACGAGCTCCGCAACGAGGATGTTCAGCTTCGCCTCAACAGCATCAAGAAGCT GTCCACCATCGCCTTGGCCCTCGGGGTCGAAAGGACCCGCAGTGAGCTGCTGCCCTTCCT CACAGACACCATCTACGATGAGGACGAGGTCCTGCTGGCCCTGGCGGAACAGCTGGGCAC CTTCACCACGCTGGTCGGAGGCCCCGAGTACGTGCACTGCCTGCTGCCGCCCCTGGAGTC GCTGGCCACGGTGGAGGAGACGGTGGTGCGCGACAAGGCGGTGGAGTCCCTGCGGGCCAT CTCACATGAGCACTCGCCCTCCGACCTCGAGGCCCACTTCGTGCCGCTCGTGAAGCGGCT GGCGGGCGGCGACTGGTTCACCTCCCGCACCTCGGCCTGCGGCCTCTTCTCCGTCTGCTA CCCCCGTGTGTCCAGTGCCGTCAAGGCGGAGCTTCGACAGTACTTCCGGAACCTGTGCTC AGATGACACCCCCATGGTGCGGCGGGCCGCAGCCTCCAAGCTGGGGGAGTTTGCCAAGGT GCTGGAGCTGGACAACGTCAAGAGCGAGATCATCCCCATGTTCTCCAACCTGGCCTCTGA CGAGCAGGACTCGGTGCGGCTGCTGGCGGTGGAGGCGTGCGTGAACATCGCCCAGCTCCT GCCCCAGGAGGATCTGGAGGCCCTGGTGATGCCCACCCTGCGCCAGGCTGCGGAGGACAA GTCCTGGCGTGTGCGGTACATGGTGGCCGACAAGTTCACAGAGCTCCAGAAAGCAGTGGG GCCTGAGATCACCAAGACGGACCTGGTCCCCGCCTTCCAGAACCTGATGAAAGACTGTGA GGCCGAGGTGAGGGCCGCAGCCTCCCACAAGGTCAAAGAGTTCTGTGAAAACCTCTCAGC CGACTGTCGGGAGAATGTCATCATGACTCAGATCTTGCCCTGCATCAAGGAGCTGGTGTC CGACGCCAACCAGCATGTCAAGTCGGCCCTGGCCTCGGTCATCATGGGCCTTTCTCCCAT CCTGGGCAAGGACAACACCATCGAGCACCTGCTGCCCCTCTTCCTGGCTCAGCTGAAGGA TGAGTGCCCGGAGGTGCGGCTCAACATCATCTCCAACCTGGACTGCGTCAATGAGGTGAT TGGCATCCGGCAGCTGTCCCAGTCCCTGCTTCCCGCCATCGTGGAGCTGGCCGAGGATGC CAAGTGGCGGGTCCGGCTGGCCATCATTGAGTACATGCCACTGCTGGCCGGACAGCTGGG GGTGGAGTTCTTTGATGAGAAGCTCAACTCCCTGTGCATGGCCTGGCTCGTGGATCACGT CTACGCCATCCGCGAGGCGGCCACCAGCAACCTGAAGAAGCTGGTGGAGAAGTTTGGGAA GGAGTGGGCCCACGCCACCATCATCCCCAAGGTCCTGGCCATGTCTGGGGACCCCAACTA CCTGCACCGCATGACCACGCTCTTCTGCATCAACGTGCTGTCCGAGGTCTGCGGCCAGGA CATCACTACCAAGCACATGCTGCCCACGGTGCTGCGCATGGCCGGGGACCCCGTCGCCAA CGTCCGCTTCAACGTGGCCAAGTCCCTCCAGAAGATCGGGCCCATCCTGGACAACAGCAC GCTGCAGAGCGAGGTCAAGCCCATCCTAGAGAAGCTGACCCAGGACCAGGACGTGGACGT CAAGTACTTCGCCCAGGAGGCTCTGACTGTTCTGTCGCTCGCCTGATGCTGAAGAGGAGC CATGGCTGCCTGTGGTGTCACCCTCCCCTGAAGTCCCTCCCTCGGGAGACAGTGGGGGGC CTTAGGCTGTCGCCCCCCGTGCATGGTCTGACCCCAGGCCCCTCCCCCAGCACGGTTCCT CCTCTCCCCGGCTTGGGAACCCAGCTCGTCACCGTCCGCCTCCCAAGGGCTGGGGGTGCA CCCGGAGGGACGGGGCGTGACCCTGGGGGAAGGGCCTGCTGCGGCCTGCGCTGGGGAGAG ACGTGAGCAGCCCAGGTCGCCGGCTCCTGCTGCTGTAATGGGGACCCCTCCCCCATCGAC TTCTCCACCCCCTTCCTTCCCCTCCGTGGTTTTTTTGTGTCAACTGTGCCGTTTTTATTT TATTCCTTTCCCCCCCTTTTCACAGAGAAATAAAGGTCTAGAAATAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
TCCCGGCCCAGCCCCTCCCTACCCGGGTTTCAGCACGGCGCCGGCCGCAGTCTGACAGAC ACAAGACGGAGCCAAGATGGCGGCGGCCGACGGCGATGACTCGCTCTACCCCATCGCGGT GCTCATAGACGAGCTCCGCAACGAGGATGTTCAGCTTCGCCTCAACAGCATCAAGAAGCT GTCCACCATCGCCTTGGCCCTCGGGGTCGAAAGGACCCGCAGTGAGCTGCTGCCCTTCCT CACAGACACCATCTACGATGAGGACGAGGTCCTGCTGGCCCTGGCGGAACAGCTGGGCAC CTTCACCACGCTGGTCGGAGGCCCCGAGTACGTGCACTGCCTGCTGCCGCCCCTGGAGTC GCTGGCCACGGTGGAGGAGACGGTGGTGCGCGACAAGGCGGTGGAGTCCCTGCGGGCCAT CTCACATGAGCACTCGCCCTCCGACCTCGAGGCCCACTTCGTGCCGCTCGTGAAGCGGCT GGCGGGCGGCGACTGGTTCACCTCCCGCACCTCGGCCTGCGGCCTCTTCTCCGTCTGCTA CCCCCGTGTGTCCAGTGCCGTCAAGGCGGAGCTTCGACAGTACTTCCGGAACCTGTGCTC AGATGACACCCCCATGGTGCGGCGGGCCGCAGCCTCCAAGCTGGGGGAGTTTGCCAAGGT GCTGGAGCTGGACAACGTCAAGAGCGAGATCATCCCCATGTTCTCCAACCTGGCCTCTGA CGAGCAGGACTCGGTGCGGCTGCTGGCGGTGGAGGCGTGCGTGAACATCGCCCAGCTCCT GCCCCAGGAGGATCTGGAGGCCCTGGTGATGCCCACCCTGCGCCAGGCTGCGGAGGACAA GTCCTGGCGTGTGCGGTACATGGTGGCCGACAAGTTCACAGAGCTCCAGAAAGCAGTGGG GCCTGAGATCACCAAGACGGACCTGGTCCCCGCCTTCCAGAACCTGATGAAAGACTGTGA GGCCGAGGTGAGGGCCGCAGCCTCCCACAAGGTCAAAGAGTTCTGTGAAAACCTCTCAGC CGACTGTCGGGAGAATGTCATCATGACTCAGATCTTGCCCTGCATCAAGGAGCTGGTGTC CGACGCCAACCAGCATGTCAAGTCGGCCCTGGCCTCGGTCATCATGGGCCTTTCTCCCAT CCTGGGCAAGGACAACACCATCGAGCACCTGCTGCCCCTCTTCCTGGCTCAGCTGAAGGA TGAGTGCCCGGAGGTGCGGCTCAACATCATCTCCAACCTGGACTGCGTCAATGAGGTGAT TGGCATCCGGCAGCTGTCCCAGTCCCTGCTTCCCGCCATCGTGGAGCTGGCCGAGGATGC CAAGTGGCGGGTCCGGCTGGCCATCATTGAGTACATGCCACTGCTGGCCGGACAGCTGGG GGTGGAGTTCTTTGATGAGAAGCTCAACTCCCTGTGCATGGCCTGGCTCGTGGATCACGT CTACGCCATCCGCGAGGCGGCCACCAGCAACCTGAAGAAGCTGGTGGAGAAGTTTGGGAA GGAGTGGGCCCACGCCACCATCATCCCCAAGGTCCTGGCCATGTCTGGGGACCCCAACTA CCTGCACCGCATGACCACGCTCTTCTGCATCAACGTGCTGTCCGAGGTCTGCGGCCAGGA CATCACTACCAAGCACATGCTGCCCACGGTGCTGCGCATGGCCGGGGACCCCGTCGCCAA CGTCCGCTTCAACGTGGCCAAGTCCCTCCAGAAGATCGGGCCCATCCTGGACAACAGCAC GCTGCAGAGCGAGGTCAAGCCCATCCTAGAGAAGCTGACCCAGGACCAGGACGTGGACGT CAAGTACTTCGCCCAGGAGGCTCTGACTGTTCTGTCGCTCGCCTGATGCTGAAGAGGAGC CATGGCTGCCTGTGGTGTCACCCTCCCCTGAAGTCCCTCCCTCGGGAGACAGTGGGGGGC CTTAGGCTGTCGCCCCCCGTGCATGGTCTGACCCCAGGCCCCTCCCCCAGCACGGTTCCT CCTCTCCCCGGCTTGGGAACCCAGCTCGTCACCGTCCGCCTCCCAAGGGCTGGGGGTGCA CCCGGAGGGACGGGGCGTGACCCTGGGGGAAGGGCCTGCTGCGGCCTGCGCTGGGGAGAG ACGTGAGCAGCCCAGGTCGCCGGCTCCTGCTGCTGTAATGGGGACCCCTCCCCCATCGAC TTCTCCACCCCCTTCCTTCCCCTCCGTGGTTTTTTTGTGTCAACTGTGCCGTTTTTATTT TATTCCTTTCCCCCCCTTTTCACAGAGAAATAAAGGTCTAGAAATAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
1898-2052, + strand, RNAz p=0.706343 |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
1898-2052, + strand, RNAz p=0.706343 |
Homologous human UTR: 1 entry(ies) | More info |
Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
3' of AK091387, + |
Aligned organism(s): 75 entry(ies) | More info |
Aligned organism(s): 75 entry(ies) | Help | Less info |
1-159, gnl|bosTau2|chr18 (51543928-51544087) | |
1-159, gnl|canFam2|chr1 (107894058-107893898) | |
1-159, gnl|danRer3|chr5 (64296842-64297027) | |
1-159, gnl|dasNov1|scaffold_154460 (4215-4061) | |
1-159, gnl|echTel1|scaffold_172161 (914-1075) | |
1-159, gnl|fr1|chrUn (167217467-167217626) | |
1-159, gnl|hg17|chr19 (57385086-57385242) | |
1-159, gnl|Hg17|chr19 (57385088-57385244) | |
1-159, gnl|loxAfr1|scaffold_174955 (60-222) | |
1-159, gnl|mm7|chr17 (19121748-19121909) | |
1-159, gnl|Mm7|chr17 (19121753-19121908) | |
1-159, gnl|oryCun1|scaffold_99137 (9128-8967) | |
1-159, gnl|panTro1|chr20 (54814002-54814159) | |
1-159, gnl|rheMac2|chr19 (58249498-58249651) | |
1-159, gnl|rn3|chr1 (58445086-58445246) | |
346-612, gnl|bosTau2|chr18 (51557065-51557334) | |
346-612, gnl|canFam2|chr1 (107871824-107871583) | |
346-612, gnl|danRer3|chr5 (64301694-64301935) | |
346-612, gnl|dasNov1|scaffold_31326 (9194-8953) | |
346-612, gnl|echTel1|scaffold_227777 (499-735) | |
346-612, gnl|fr1|chrUn (167218825-167219066) | |
346-612, gnl|hg17|chr19 (57406322-57406563) | |
346-612, gnl|Hg17|chr19 (57406324-57406585) | |
346-612, gnl|loxAfr1|scaffold_45022 (9804-9563) | |
346-612, gnl|mm7|chr17 (19132108-19132349) | |
346-612, gnl|Mm7|chr17 (19132110-19132355) | |
346-612, gnl|monDom2|scaffold_212 (676468-676227) | |
346-612, gnl|oryCun1|scaffold_211749 (79978-79738) | |
346-612, gnl|panTro1|chr20 (54835079-54835320) | |
346-612, gnl|rheMac2|chr19 (58271449-58271690) | |
346-612, gnl|rn3|chr1 (58453541-58453782) | |
346-612, gnl|xenTro1|scaffold_285 (245010-245251) | |
725-883, gnl|bosTau2|chr18 (51558451-51558609) | |
725-883, gnl|Hg17|chr19 (57408017-57408175) | |
725-883, gnl|Mm7|chr17 (19133277-19133435) | |
1203-1379, gnl|bosTau2|chr18 (51562662-51562838) | |
1203-1379, gnl|canFam2|chr1 (107861828-107861615) | |
1203-1379, gnl|danRer3|chr5 (64313542-64313725) | |
1203-1379, gnl|dasNov1|scaffold_31326 (3691-3472) | |
1203-1379, gnl|echTel1|scaffold_227777 (1362-1533) | |
1203-1379, gnl|fr1|chrUn (167222241-167222446) | |
1203-1379, gnl|galGal2|chrUn (111280883-111281097) | |
1203-1379, gnl|hg17|chr19 (57414748-57414971) | |
1203-1379, gnl|Hg17|chr19 (57414754-57414930) | |
1203-1379, gnl|loxAfr1|scaffold_36421 (20849-21035) | |
1203-1379, gnl|mm7|chr17 (19136782-19136999) | |
1203-1379, gnl|Mm7|chr17 (19136786-19136963) | |
1203-1379, gnl|monDom2|scaffold_212 (661764-661546) | |
1203-1379, gnl|oryCun1|scaffold_211749 (71214-71023) | |
1203-1379, gnl|panTro1|chr20 (54843767-54843990) | |
1203-1379, gnl|rheMac2|chr19 (58280558-58280781) | |
1203-1379, gnl|rn3|chr1 (58458742-58458955) | |
1203-1379, gnl|tetNig1|chrUn_random (90532509-90532316) | |
1203-1379, gnl|xenTro1|scaffold_285 (254278-254467) | |
1439-1597, gnl|bosTau2|chr18 (51563839-51563997) | |
1439-1597, gnl|canFam2|chr1 (107860683-107860523) | |
1439-1597, gnl|danRer3|chr5 (64314181-64314341) | |
1439-1597, gnl|dasNov1|scaffold_1033 (62283-62123) | |
1439-1597, gnl|echTel1|scaffold_227777 (1595-1750) | |
1439-1597, gnl|fr1|chrUn (167223418-167223578) | |
1439-1597, gnl|hg17|chr19 (57416044-57416204) | |
1439-1597, gnl|Hg17|chr19 (57416043-57416201) | |
1439-1597, gnl|loxAfr1|scaffold_218282 (202-42) | |
1439-1597, gnl|mm7|chr17 (19137908-19138068) | |
1439-1597, gnl|Mm7|chr17 (19137907-19138065) | |
1439-1597, gnl|monDom2|scaffold_212 (659050-658890) | |
1439-1597, gnl|oryCun1|scaffold_185673 (6946-7108) | |
1439-1597, gnl|panTro1|chr20 (54845060-54845220) | |
1439-1597, gnl|rheMac2|chr19 (58281849-58282009) | |
1439-1597, gnl|rn3|chr1 (58459857-58460017) | |
1439-1597, gnl|tetNig1|chrUn_random (90531455-90531295) | |
1439-1597, gnl|xenTro1|scaffold_285 (256808-256968) | |
1829-2203, gnl|bosTau2|chr18 (51566394-51566767) | |
1829-2203, gnl|Hg17|chr19 (57421029-57421409) | |
1829-2203, gnl|Mm7|chr17 (19141777-19142166) |
Aligned organism(s): 75 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
1-159, gnl|bosTau2|chr18 (51543928-51544087) | |
1-159, gnl|canFam2|chr1 (107894058-107893898) | |
1-159, gnl|danRer3|chr5 (64296842-64297027) | |
1-159, gnl|dasNov1|scaffold_154460 (4215-4061) | |
1-159, gnl|echTel1|scaffold_172161 (914-1075) | |
1-159, gnl|fr1|chrUn (167217467-167217626) | |
1-159, gnl|hg17|chr19 (57385086-57385242) | |
1-159, gnl|Hg17|chr19 (57385088-57385244) | |
1-159, gnl|loxAfr1|scaffold_174955 (60-222) | |
1-159, gnl|mm7|chr17 (19121748-19121909) | |
1-159, gnl|Mm7|chr17 (19121753-19121908) | |
1-159, gnl|oryCun1|scaffold_99137 (9128-8967) | |
1-159, gnl|panTro1|chr20 (54814002-54814159) | |
1-159, gnl|rheMac2|chr19 (58249498-58249651) | |
1-159, gnl|rn3|chr1 (58445086-58445246) | |
346-612, gnl|bosTau2|chr18 (51557065-51557334) | |
346-612, gnl|canFam2|chr1 (107871824-107871583) | |
346-612, gnl|danRer3|chr5 (64301694-64301935) | |
346-612, gnl|dasNov1|scaffold_31326 (9194-8953) | |
346-612, gnl|echTel1|scaffold_227777 (499-735) | |
346-612, gnl|fr1|chrUn (167218825-167219066) | |
346-612, gnl|hg17|chr19 (57406322-57406563) | |
346-612, gnl|Hg17|chr19 (57406324-57406585) | |
346-612, gnl|loxAfr1|scaffold_45022 (9804-9563) | |
346-612, gnl|mm7|chr17 (19132108-19132349) | |
346-612, gnl|Mm7|chr17 (19132110-19132355) | |
346-612, gnl|monDom2|scaffold_212 (676468-676227) | |
346-612, gnl|oryCun1|scaffold_211749 (79978-79738) | |
346-612, gnl|panTro1|chr20 (54835079-54835320) | |
346-612, gnl|rheMac2|chr19 (58271449-58271690) | |
346-612, gnl|rn3|chr1 (58453541-58453782) | |
346-612, gnl|xenTro1|scaffold_285 (245010-245251) | |
725-883, gnl|bosTau2|chr18 (51558451-51558609) | |
725-883, gnl|Hg17|chr19 (57408017-57408175) | |
725-883, gnl|Mm7|chr17 (19133277-19133435) | |
1203-1379, gnl|bosTau2|chr18 (51562662-51562838) | |
1203-1379, gnl|canFam2|chr1 (107861828-107861615) | |
1203-1379, gnl|danRer3|chr5 (64313542-64313725) | |
1203-1379, gnl|dasNov1|scaffold_31326 (3691-3472) | |
1203-1379, gnl|echTel1|scaffold_227777 (1362-1533) | |
1203-1379, gnl|fr1|chrUn (167222241-167222446) | |
1203-1379, gnl|galGal2|chrUn (111280883-111281097) | |
1203-1379, gnl|hg17|chr19 (57414748-57414971) | |
1203-1379, gnl|Hg17|chr19 (57414754-57414930) | |
1203-1379, gnl|loxAfr1|scaffold_36421 (20849-21035) | |
1203-1379, gnl|mm7|chr17 (19136782-19136999) | |
1203-1379, gnl|Mm7|chr17 (19136786-19136963) | |
1203-1379, gnl|monDom2|scaffold_212 (661764-661546) | |
1203-1379, gnl|oryCun1|scaffold_211749 (71214-71023) | |
1203-1379, gnl|panTro1|chr20 (54843767-54843990) | |
1203-1379, gnl|rheMac2|chr19 (58280558-58280781) | |
1203-1379, gnl|rn3|chr1 (58458742-58458955) | |
1203-1379, gnl|tetNig1|chrUn_random (90532509-90532316) | |
1203-1379, gnl|xenTro1|scaffold_285 (254278-254467) | |
1439-1597, gnl|bosTau2|chr18 (51563839-51563997) | |
1439-1597, gnl|canFam2|chr1 (107860683-107860523) | |
1439-1597, gnl|danRer3|chr5 (64314181-64314341) | |
1439-1597, gnl|dasNov1|scaffold_1033 (62283-62123) | |
1439-1597, gnl|echTel1|scaffold_227777 (1595-1750) | |
1439-1597, gnl|fr1|chrUn (167223418-167223578) | |
1439-1597, gnl|hg17|chr19 (57416044-57416204) | |
1439-1597, gnl|Hg17|chr19 (57416043-57416201) | |
1439-1597, gnl|loxAfr1|scaffold_218282 (202-42) | |
1439-1597, gnl|mm7|chr17 (19137908-19138068) | |
1439-1597, gnl|Mm7|chr17 (19137907-19138065) | |
1439-1597, gnl|monDom2|scaffold_212 (659050-658890) | |
1439-1597, gnl|oryCun1|scaffold_185673 (6946-7108) | |
1439-1597, gnl|panTro1|chr20 (54845060-54845220) | |
1439-1597, gnl|rheMac2|chr19 (58281849-58282009) | |
1439-1597, gnl|rn3|chr1 (58459857-58460017) | |
1439-1597, gnl|tetNig1|chrUn_random (90531455-90531295) | |
1439-1597, gnl|xenTro1|scaffold_285 (256808-256968) | |
1829-2203, gnl|bosTau2|chr18 (51566394-51566767) | |
1829-2203, gnl|Hg17|chr19 (57421029-57421409) | |
1829-2203, gnl|Mm7|chr17 (19141777-19142166) |
Expressed library(ies): 20 entry(ies) | More info |
Expressed library(ies): 20 entry(ies) | Help | Less info |
ebs (0.94641) | |
hyp (0.85702) | |
ese (0.632511) | |
pla (0.534688) | |
cag (0.453583) | |
fbs (0.350693) | |
nco (0.323468) | |
eep (0.245128) | |
clu (0.239292) | |
ecc (0.23007) | |
fli (0.202881) | |
jej (0.197844) | |
fcc (0.197785) | |
nep (0.183925) | |
ill (0.175593) | |
mcp (0.170648) | |
fhi (0.169578) | |
lnt (0.142308) | |
ute (0.132784) | |
cly (0.120642) |
Expressed library(ies): 20 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
ebs (0.94641) | |
hyp (0.85702) | |
ese (0.632511) | |
pla (0.534688) | |
cag (0.453583) | |
fbs (0.350693) | |
nco (0.323468) | |
eep (0.245128) | |
clu (0.239292) | |
ecc (0.23007) | |
fli (0.202881) | |
jej (0.197844) | |
fcc (0.197785) | |
nep (0.183925) | |
ill (0.175593) | |
mcp (0.170648) | |
fhi (0.169578) | |
lnt (0.142308) | |
ute (0.132784) | |
cly (0.120642) |