Ss1.1-Lng1-LNG010056A12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTTGTTTTGCTTTCGATCTGGACTGTTCTCAGGCAAGCCGGGGAGTAACTTTTAGTTTT GCTCCTGCGATTATTCAACTGACGGGCTTTCATTTCCATTTCACACACCCTAGCAACACT TAAGCCTTGCGGAATTGTATTGGTAGCGTGAAAAAGCACACTGAGAGGGCACCATGCCGG TGGAAAGGATGCGGATGCGCCCGTGGCTGGAGGAACAGATCAACTCAAATACGATACCAG GGCTAAAGTGGCTTAACAAGGAAAAGAAGATTTTTCAGATCCCCTGGATGCATGCAGCTA GACATGGGTGGGATGTGGAAAAAGATGCACCACTCTTTAGAAACTGGGCCATCCATACAG GAAAGCATCAACCGGGAGTAGATAAACCTGATCCAAAAACATGGAAGGCGAATTTTCGAT GTGCCATGAACTCCTTGCCTGACATTGAAGAAGTCAAGGATAAAAGCATAAAGAAAGGAA ACAATGCCTTCAGGGTATACCGGATGCTGCCCTTATCTGAGCGACCTTCTAAGAAAGGAA AGAAACCAAAGACAGAAAAGGAAGACAGAGTGAAGCACATCAAGCAAGAACCAGTTGAGT CATCTTTGGGGCTTAGTAATGGAGTAAGTGATCTTTCTCCTGAGTACGCGGTCCTGACTT CAGCTATAAAAAATGAAGTGGATAGTACGGTGAACATCATAGTTGTAGGACAGTCACATC TGGACAGCACCATTGAGGATCAAGAGATTGTCACTAACCCACCAGACATCTGCCAAGTCG TGGAGGTGACCACCGAGAGTGATGAGCAGCCGGTCAGCATGAGTGAGCTCTACCCCCTGC AGATCTCCCCCGTGTCTTCCTACGCAGAAAGCGAAACTACCGATAGTGTGCCCAGTGATG AAGAGAGCTCAGAGGGCCGACCTCACTGGCGGAAGAGGAACATTGAAGGCAAGCAGTACC TCAGCAACATGGGGACGCGGACCGCCTACCTGCTGCCCAGCATGGCAACCTTCGTCACTT CCAACAAGCCCGACCTCCAGGTCACTGTCAAAGAGGAGAGCTGTCCGGTGCCTTACAACA GCTCCTGGCCCCCGTTCCCAGACCTCCCCCTCACAGCCCCCGGGACCCCGGCGCCCAGCA GCAGTCGGCCGGACCGGGAGACCCGGGCCAGTGTCATCAAGAAGACATCCGACGTCACCC AGGCCCGCGTCAAGAGCTGTTAAGCCTTTGACTTCCCCTGGTGGTTGTTGGGATTTCTTG GCTTTGTTTTATTGTTTGTTTGTATTTTATTTTTCTCTCTGACATCTGTTTTAGACAAAT CTTAAGGGAAAAAGCCTTGACATTAGAACATTGATTGCTGTGTCCAACTCCAGTACTGGA GCTTCTTTTGAACTCAGGACTCCAGCCCCTTGGTAGACGCGTGATCTCTAGAGCCTGCTG GATCTCCCAGGGCTGCTCCCTCAAGTTCAAGAACGTCATAGGACCAACACCCACACGGGC AGTGAGGTGCTGCATTGCCTGCGGTCAAGGCCAGCGTGGTGGCGTGGATGCCTCAGAATG GATGAGAAAATGTGAACTAGCTAGAATTTTTTATTCTTGTGAATATGTACATAGGGCAGT ACTAGCGACGTTGCAGTCTGCTTCTGCACCTTATCTTAAAGCACTTACAGACAGACCTTC TTGTGATCTTGCTCTGTTTCACAGCACCGTCAACACCCCCTTCCCTGCCCTCCTCCCCTC CCCTCCCATTTCCTTCCTCCTTTTTTCTCCCTTCAAAGGCTGTGTCCCACATCCCTGAGG AGGAGGAGAAGAAAATGAACTTCTCCGCAGATGTCCCATTTTCAGACTGCTTTAAAAAAA AAAAAAAAAGAAAAAAGAAAATCTTTCTAATCTGCTATGCTTGAATGCCACGCGGTACAA AGAAAAACTATCATGGAGAGATTATTCAAATTCCCAGATTTGAAGACGAAAATACTCTAA TTCTAACCAGAGCAAGCTTTTTTATTTTTTATACAGGGGAATATTTTATTCAAGGTAAAA TTCTAAAGAAGATATAATTGTTTTTTATCTTTTCTACAGCAAATTTATAATTTTAAGATT CCTTTTCTTGTTTATCGGCAATTGTTATTACATCCTTGTGGCACATTTTTTTTTTAATTT TGTAAAGTTGAAAAAGCTTTTATGAGCTCATGTAGCAATCAAATTATCCTGTGGACTGAT AATAAATGAATATGATATATAGTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTTGTTTTGCTTTCGATCTGGACTGTTCTCAGGCAAGCCGGGGAGTAACTTTTAGTTTT GCTCCTGCGATTATTCAACTGACGGGCTTTCATTTCCATTTCACACACCCTAGCAACACT TAAGCCTTGCGGAATTGTATTGGTAGCGTGAAAAAGCACACTGAGAGGGCACCATGCCGG TGGAAAGGATGCGGATGCGCCCGTGGCTGGAGGAACAGATCAACTCAAATACGATACCAG GGCTAAAGTGGCTTAACAAGGAAAAGAAGATTTTTCAGATCCCCTGGATGCATGCAGCTA GACATGGGTGGGATGTGGAAAAAGATGCACCACTCTTTAGAAACTGGGCCATCCATACAG GAAAGCATCAACCGGGAGTAGATAAACCTGATCCAAAAACATGGAAGGCGAATTTTCGAT GTGCCATGAACTCCTTGCCTGACATTGAAGAAGTCAAGGATAAAAGCATAAAGAAAGGAA ACAATGCCTTCAGGGTATACCGGATGCTGCCCTTATCTGAGCGACCTTCTAAGAAAGGAA AGAAACCAAAGACAGAAAAGGAAGACAGAGTGAAGCACATCAAGCAAGAACCAGTTGAGT CATCTTTGGGGCTTAGTAATGGAGTAAGTGATCTTTCTCCTGAGTACGCGGTCCTGACTT CAGCTATAAAAAATGAAGTGGATAGTACGGTGAACATCATAGTTGTAGGACAGTCACATC TGGACAGCACCATTGAGGATCAAGAGATTGTCACTAACCCACCAGACATCTGCCAAGTCG TGGAGGTGACCACCGAGAGTGATGAGCAGCCGGTCAGCATGAGTGAGCTCTACCCCCTGC AGATCTCCCCCGTGTCTTCCTACGCAGAAAGCGAAACTACCGATAGTGTGCCCAGTGATG AAGAGAGCTCAGAGGGCCGACCTCACTGGCGGAAGAGGAACATTGAAGGCAAGCAGTACC TCAGCAACATGGGGACGCGGACCGCCTACCTGCTGCCCAGCATGGCAACCTTCGTCACTT CCAACAAGCCCGACCTCCAGGTCACTGTCAAAGAGGAGAGCTGTCCGGTGCCTTACAACA GCTCCTGGCCCCCGTTCCCAGACCTCCCCCTCACAGCCCCCGGGACCCCGGCGCCCAGCA GCAGTCGGCCGGACCGGGAGACCCGGGCCAGTGTCATCAAGAAGACATCCGACGTCACCC AGGCCCGCGTCAAGAGCTGTTAAGCCTTTGACTTCCCCTGGTGGTTGTTGGGATTTCTTG GCTTTGTTTTATTGTTTGTTTGTATTTTATTTTTCTCTCTGACATCTGTTTTAGACAAAT CTTAAGGGAAAAAGCCTTGACATTAGAACATTGATTGCTGTGTCCAACTCCAGTACTGGA GCTTCTTTTGAACTCAGGACTCCAGCCCCTTGGTAGACGCGTGATCTCTAGAGCCTGCTG GATCTCCCAGGGCTGCTCCCTCAAGTTCAAGAACGTCATAGGACCAACACCCACACGGGC AGTGAGGTGCTGCATTGCCTGCGGTCAAGGCCAGCGTGGTGGCGTGGATGCCTCAGAATG GATGAGAAAATGTGAACTAGCTAGAATTTTTTATTCTTGTGAATATGTACATAGGGCAGT ACTAGCGACGTTGCAGTCTGCTTCTGCACCTTATCTTAAAGCACTTACAGACAGACCTTC TTGTGATCTTGCTCTGTTTCACAGCACCGTCAACACCCCCTTCCCTGCCCTCCTCCCCTC CCCTCCCATTTCCTTCCTCCTTTTTTCTCCCTTCAAAGGCTGTGTCCCACATCCCTGAGG AGGAGGAGAAGAAAATGAACTTCTCCGCAGATGTCCCATTTTCAGACTGCTTTAAAAAAA AAAAAAAAAGAAAAAAGAAAATCTTTCTAATCTGCTATGCTTGAATGCCACGCGGTACAA AGAAAAACTATCATGGAGAGATTATTCAAATTCCCAGATTTGAAGACGAAAATACTCTAA TTCTAACCAGAGCAAGCTTTTTTATTTTTTATACAGGGGAATATTTTATTCAAGGTAAAA TTCTAAAGAAGATATAATTGTTTTTTATCTTTTCTACAGCAAATTTATAATTTTAAGATT CCTTTTCTTGTTTATCGGCAATTGTTATTACATCCTTGTGGCACATTTTTTTTTTAATTT TGTAAAGTTGAAAAAGCTTTTATGAGCTCATGTAGCAATCAAATTATCCTGTGGACTGAT AATAAATGAATATGATATATAGTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1152-1267, - strand, RNAz p=0.745477 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1152-1267, - strand, RNAz p=0.745477 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 359-538, gnl|bosTau2|chr27 (7709903-7709724) | |
| 359-538, gnl|Hg17|chr4 (185715013-185714834) | |
| 359-538, gnl|Mm7|chr8 (45585089-45585268) | |
| 701-867, gnl|bosTau2|chr27 (7689612-7689446) | |
| 701-867, gnl|canFam2|chr16 (49081603-49081485) | |
| 701-867, gnl|danRer3|chrNA (105109460-105109570) | |
| 701-867, gnl|dasNov1|scaffold_9900 (23402-23284) | |
| 701-867, gnl|echTel1|scaffold_162464 (1483-1601) | |
| 701-867, gnl|galGal2|chr4 (40166767-40166645) | |
| 701-867, gnl|hg17|chr4 (185695210-185695332) | |
| 701-867, gnl|Hg17|chr4 (185695384-185695218) | |
| 701-867, gnl|loxAfr1|scaffold_35574 (15405-15287) | |
| 701-867, gnl|mm7|chr8 (45615713-45615595) | |
| 701-867, gnl|Mm7|chr8 (45615541-45615707) | |
| 701-867, gnl|monDom2|scaffold_9 (66466053-66466175) | |
| 701-867, gnl|oryCun1|scaffold_200035 (111586-111468) | |
| 701-867, gnl|panTro1|chr3 (203900771-203900893) | |
| 701-867, gnl|rheMac2|chr5 (176509862-176509984) | |
| 701-867, gnl|rn3|chr16 (48681204-48681322) | |
| 701-867, gnl|xenTro1|scaffold_99 (1768139-1768260) | |
| 913-1748, gnl|bosTau2|chr27 (7679724-7678878) | |
| 913-1748, gnl|Hg17|chr4 (185685371-185684562) | |
| 913-1748, gnl|Mm7|chr8 (45623781-45624646) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 359-538, gnl|bosTau2|chr27 (7709903-7709724) | |
| 359-538, gnl|Hg17|chr4 (185715013-185714834) | |
| 359-538, gnl|Mm7|chr8 (45585089-45585268) | |
| 701-867, gnl|bosTau2|chr27 (7689612-7689446) | |
| 701-867, gnl|canFam2|chr16 (49081603-49081485) | |
| 701-867, gnl|danRer3|chrNA (105109460-105109570) | |
| 701-867, gnl|dasNov1|scaffold_9900 (23402-23284) | |
| 701-867, gnl|echTel1|scaffold_162464 (1483-1601) | |
| 701-867, gnl|galGal2|chr4 (40166767-40166645) | |
| 701-867, gnl|hg17|chr4 (185695210-185695332) | |
| 701-867, gnl|Hg17|chr4 (185695384-185695218) | |
| 701-867, gnl|loxAfr1|scaffold_35574 (15405-15287) | |
| 701-867, gnl|mm7|chr8 (45615713-45615595) | |
| 701-867, gnl|Mm7|chr8 (45615541-45615707) | |
| 701-867, gnl|monDom2|scaffold_9 (66466053-66466175) | |
| 701-867, gnl|oryCun1|scaffold_200035 (111586-111468) | |
| 701-867, gnl|panTro1|chr3 (203900771-203900893) | |
| 701-867, gnl|rheMac2|chr5 (176509862-176509984) | |
| 701-867, gnl|rn3|chr16 (48681204-48681322) | |
| 701-867, gnl|xenTro1|scaffold_99 (1768139-1768260) | |
| 913-1748, gnl|bosTau2|chr27 (7679724-7678878) | |
| 913-1748, gnl|Hg17|chr4 (185685371-185684562) | |
| 913-1748, gnl|Mm7|chr8 (45623781-45624646) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| cty (0.5204) | |
| ssp (0.271039) | |
| pla (0.267344) | |
| nep (0.183925) | |
| gul (0.177588) | |
| ill (0.175593) | |
| nje (0.16592) | |
| cje (0.165235) | |
| cag (0.151194) | |
| bfe (0.149858) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| lyg (0.133103) | |
| kid (0.129735) | |
| ova (0.129132) | |
| thg (0.126791) | |
| tra (0.123092) | |
| cbl (0.114797) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.5204) | |
| ssp (0.271039) | |
| pla (0.267344) | |
| nep (0.183925) | |
| gul (0.177588) | |
| ill (0.175593) | |
| nje (0.16592) | |
| cje (0.165235) | |
| cag (0.151194) | |
| bfe (0.149858) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| lyg (0.133103) | |
| kid (0.129735) | |
| ova (0.129132) | |
| thg (0.126791) | |
| tra (0.123092) | |
| cbl (0.114797) |