Ss1.1-Lng1-LNG010057D11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCGGTGCCGACGTCAGGCCCTCCCCCAGCGGTGCTGACGTCGACGGCCGGGCAGGGTGA ACCGACGCCGCTGCCGCCGCAGGCCCCTCCACGCCCACACCCCCTACCCACTGCCCAGCC ATGGAGGCCATCTCGGGGGCCGGGGCGCGGCTGCTGCAGCTCTTGCAAGAGCAGAGCCGA GCCGAGCGCCCGCCGCTGCCCGCCGCCCGCTGCGTGCGCCTCCGCGCCATGGCTGGCCTC AACTCCCTGGAGGCGGTGAAACGCAAGATCCAGGCCCTGCAGCAGCAGGCGGACGAGGCA GAGGATCGCGCGCAGGGCCTGCAGCGGGAGCTGGACGGCGAGCGCGAGCGGCGGGAGAAA GCCGAAGGGGATGTAGCAGCTCTCAATCGGCGCATCCAACTCGTTGAGGAGGAGTTGGAC AGGGCTCAGGAACGACTGGCCACAGCCCTGCAGAAGCTTGAGGAGGCAGAAAAGGCTGCA GATGAGAGCGAGAGAGGAATGAAGGTGATAGAAAACCGGGCCATGAAAGATGAGGAGAAG ATGGAGATTCAGGAGATGCAGCTCAAAGAGGCCAAGCACATTGCCGAGGAGGCCGACCGC AAATACGAGGAGGTAGCTCGTAAGTTGGTCATCCTGGAGGGCGAGCTGGAGAGGGCAGAG GAGCGTGCCGAGGTGTCTGAACTAAAATGTGGTGACCTGGAAGAAGAACTCAAGAATGTC ACCAACAACCTGAAGTCGCTAGAGGCTGCATCTGAAAAGTATTCTGAAAAGGAGGATAAA TATGAAGAAGAGATTAAACTTCTGTCTGACAAACTGAAAGAGGCTGAGACCCGTGCTGAA TTTGCAGAGAGAACAGTTGCAAAACTGGAAAAGACCATCGATGACCTGGAAGAAAAACTT GCCCAGGCCAAAGAAGAGAACGTGGGCTTACATCAGACACTGGATCAGACACTAAACGAA CTAAACTGTATATAACCAAAACAGAAGAGTCTCGTTCCATCAGAAACTCCAGAGCTACGT GTTTTTCTCTTCTCTTGTAAGAAGTTTCTTTTGTTATTGCCTCTTTGCTTTGCTGGAAAT GTCAAGCAAATTATGAATACGTGACCAAATATTTTGTATCAGAAAAGCTTTGAGCACCAG TTAAATCTATTCCTTCCTTTTTTTCAAGTGGCACCAGCTTTTTCAGCTCTATTTTTATCC TTAAATTGCATTTATTCCTAAAGTAGGCAGGGTATTTCATATTGAGCATACTCTCTTAAG ACTGAGGGCATTTGGTTCCTGGGAGAATAGACAACCCCACACTTTAAAAATACAGACTCC AATGTCTAGTCATGGGTCAATTTAAAAAGTTGAAGAATATCCACTGCTGGTCACACTATA GGAGGCCAGGGACCATCACATTAAAATGAGTGGGGATTTTCCAGCCAGAGTAAAAAAAAA AAAAAAAAGAGGGTGGTGGGGTTTACTGTGGGAAGTCATAAACCACAGAGAGATTAACCT AATCATCCTGGCTCCTTTTCCACCCTCCACCCGTGCAGAACAAACATCCTCTGAGTGGTC AGCATGAGAATGCCTGGTAAAAAGTCATAATTACCCAAATATTTTTCTGGATCCTTGACA TGCTCCTCTATGTTTCTTTCATTCTAGAGTTGTTCTCTGAGGAGCTGTCTTATTCCAATA ATGACCCATGCTTGTCTGCTCTGATATGAGGCCATCCACTTAGCAGGAGTGAATATTGTA GAATTCAGTCCCATTCAGAGAAGCTATATCATAAAGACTGCCAGCCATCAATAATTGAGC AAGATTGTTTTCTAATAAACAAATATTGGGCAGAACGGGCCTCTGACAGCAAAGTAGATA TACCAATGTAGCTGGCCTAACATCATCTCCTCTATACTCTGGGAATGGCAAATTAGAGAT TTACTTATCTAGAATTTAATCCCTTCTTCAGGGTCAAGTTAATAAATAAGACCAAGAAAC TCCTGATTAAACTGGATATGGAGTATTTTATAGACAGGGCTGCACATTTTGGCTTTATTA TATTTCCGCTTTCTCAGTTAACATCTCAGAGCTGAAACATTCCATACGCCCCAGCAGTGT GGGGGCCAACTCAAGTTTACAATTCTGACTAAAAATCACCCTGCTTCTAGCTTATCTGAA CCCTCTGCCCCTCACTCCTATTTATTAAGCGTCACACTACCCAGGAGATACACTAGCAAA TTGTGCAATTGAATAAAATCCACACTTTTCATTTAGATTCTTGCAACTGTATCATATGTA ACAGTATCACTTTTTCTACATTTTGGTCAAATAAATTTTTACATAAAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCGGTGCCGACGTCAGGCCCTCCCCCAGCGGTGCTGACGTCGACGGCCGGGCAGGGTGA ACCGACGCCGCTGCCGCCGCAGGCCCCTCCACGCCCACACCCCCTACCCACTGCCCAGCC ATGGAGGCCATCTCGGGGGCCGGGGCGCGGCTGCTGCAGCTCTTGCAAGAGCAGAGCCGA GCCGAGCGCCCGCCGCTGCCCGCCGCCCGCTGCGTGCGCCTCCGCGCCATGGCTGGCCTC AACTCCCTGGAGGCGGTGAAACGCAAGATCCAGGCCCTGCAGCAGCAGGCGGACGAGGCA GAGGATCGCGCGCAGGGCCTGCAGCGGGAGCTGGACGGCGAGCGCGAGCGGCGGGAGAAA GCCGAAGGGGATGTAGCAGCTCTCAATCGGCGCATCCAACTCGTTGAGGAGGAGTTGGAC AGGGCTCAGGAACGACTGGCCACAGCCCTGCAGAAGCTTGAGGAGGCAGAAAAGGCTGCA GATGAGAGCGAGAGAGGAATGAAGGTGATAGAAAACCGGGCCATGAAAGATGAGGAGAAG ATGGAGATTCAGGAGATGCAGCTCAAAGAGGCCAAGCACATTGCCGAGGAGGCCGACCGC AAATACGAGGAGGTAGCTCGTAAGTTGGTCATCCTGGAGGGCGAGCTGGAGAGGGCAGAG GAGCGTGCCGAGGTGTCTGAACTAAAATGTGGTGACCTGGAAGAAGAACTCAAGAATGTC ACCAACAACCTGAAGTCGCTAGAGGCTGCATCTGAAAAGTATTCTGAAAAGGAGGATAAA TATGAAGAAGAGATTAAACTTCTGTCTGACAAACTGAAAGAGGCTGAGACCCGTGCTGAA TTTGCAGAGAGAACAGTTGCAAAACTGGAAAAGACCATCGATGACCTGGAAGAAAAACTT GCCCAGGCCAAAGAAGAGAACGTGGGCTTACATCAGACACTGGATCAGACACTAAACGAA CTAAACTGTATATAACCAAAACAGAAGAGTCTCGTTCCATCAGAAACTCCAGAGCTACGT GTTTTTCTCTTCTCTTGTAAGAAGTTTCTTTTGTTATTGCCTCTTTGCTTTGCTGGAAAT GTCAAGCAAATTATGAATACGTGACCAAATATTTTGTATCAGAAAAGCTTTGAGCACCAG TTAAATCTATTCCTTCCTTTTTTTCAAGTGGCACCAGCTTTTTCAGCTCTATTTTTATCC TTAAATTGCATTTATTCCTAAAGTAGGCAGGGTATTTCATATTGAGCATACTCTCTTAAG ACTGAGGGCATTTGGTTCCTGGGAGAATAGACAACCCCACACTTTAAAAATACAGACTCC AATGTCTAGTCATGGGTCAATTTAAAAAGTTGAAGAATATCCACTGCTGGTCACACTATA GGAGGCCAGGGACCATCACATTAAAATGAGTGGGGATTTTCCAGCCAGAGTAAAAAAAAA AAAAAAAAGAGGGTGGTGGGGTTTACTGTGGGAAGTCATAAACCACAGAGAGATTAACCT AATCATCCTGGCTCCTTTTCCACCCTCCACCCGTGCAGAACAAACATCCTCTGAGTGGTC AGCATGAGAATGCCTGGTAAAAAGTCATAATTACCCAAATATTTTTCTGGATCCTTGACA TGCTCCTCTATGTTTCTTTCATTCTAGAGTTGTTCTCTGAGGAGCTGTCTTATTCCAATA ATGACCCATGCTTGTCTGCTCTGATATGAGGCCATCCACTTAGCAGGAGTGAATATTGTA GAATTCAGTCCCATTCAGAGAAGCTATATCATAAAGACTGCCAGCCATCAATAATTGAGC AAGATTGTTTTCTAATAAACAAATATTGGGCAGAACGGGCCTCTGACAGCAAAGTAGATA TACCAATGTAGCTGGCCTAACATCATCTCCTCTATACTCTGGGAATGGCAAATTAGAGAT TTACTTATCTAGAATTTAATCCCTTCTTCAGGGTCAAGTTAATAAATAAGACCAAGAAAC TCCTGATTAAACTGGATATGGAGTATTTTATAGACAGGGCTGCACATTTTGGCTTTATTA TATTTCCGCTTTCTCAGTTAACATCTCAGAGCTGAAACATTCCATACGCCCCAGCAGTGT GGGGGCCAACTCAAGTTTACAATTCTGACTAAAAATCACCCTGCTTCTAGCTTATCTGAA CCCTCTGCCCCTCACTCCTATTTATTAAGCGTCACACTACCCAGGAGATACACTAGCAAA TTGTGCAATTGAATAAAATCCACACTTTTCATTTAGATTCTTGCAACTGTATCATATGTA ACAGTATCACTTTTTCTACATTTTGGTCAAATAAATTTTTACATAAAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 2081-2181, - strand, RNAz p=0.775464 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 2081-2181, - strand, RNAz p=0.775464 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 138-358, gnl|bosTau2|chr10 (30890275-30890500) | |
| 138-358, gnl|Hg17|chr15 (61127734-61127957) | |
| 138-358, gnl|Mm7|chr9 (67075257-67075049) | |
| 493-622, gnl|bosTau2|chr10 (30900705-30900835) | |
| 493-622, gnl|canFam2|chr30 (30649618-30649766) | |
| 493-622, gnl|danRer3|chr18 (46365559-46365723) | |
| 493-622, gnl|dasNov1|scaffold_7454 (61161-61305) | |
| 493-622, gnl|echTel1|scaffold_48976 (2017-1904) | |
| 493-622, gnl|fr1|chrUn (201006753-201006907) | |
| 493-622, gnl|galGal2|chr10 (4960406-4960249) | |
| 493-622, gnl|hg17|chr15 (61138786-61138935) | |
| 493-622, gnl|Hg17|chr15 (61138813-61138943) | |
| 493-622, gnl|loxAfr1|scaffold_153739 (790-641) | |
| 493-622, gnl|mm7|chr9 (67065494-67065344) | |
| 493-622, gnl|Mm7|chr9 (67065464-67065334) | |
| 493-622, gnl|monDom2|scaffold_12 (50772576-50772427) | |
| 493-622, gnl|oryCun1|scaffold_183267 (41985-41836) | |
| 493-622, gnl|panTro1|chr16 (61594859-61595008) | |
| 493-622, gnl|rheMac2|chr7 (41444944-41445093) | |
| 493-622, gnl|rn3|chr8 (71361991-71361841) | |
| 493-622, gnl|tetNig1|chr5 (2574971-2574825) | |
| 493-622, gnl|xenTro1|scaffold_62 (1110063-1110203) | |
| 891-2328, gnl|bosTau2|chr7 (5062199-5063638) | |
| 891-2328, gnl|Hg17|chr19 (16073072-16074810) | |
| 891-2328, gnl|Mm7|chr8 (70674751-70676148) | |
| 1265-1915, gnl|bosTau2|chr17 (28035756-28036405) | |
| 1265-1915, gnl|Hg17|chr10 (101863598-101862680) | |
| 1265-1915, gnl|Mm7|chr17 (20185253-20184637) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 138-358, gnl|bosTau2|chr10 (30890275-30890500) | |
| 138-358, gnl|Hg17|chr15 (61127734-61127957) | |
| 138-358, gnl|Mm7|chr9 (67075257-67075049) | |
| 493-622, gnl|bosTau2|chr10 (30900705-30900835) | |
| 493-622, gnl|canFam2|chr30 (30649618-30649766) | |
| 493-622, gnl|danRer3|chr18 (46365559-46365723) | |
| 493-622, gnl|dasNov1|scaffold_7454 (61161-61305) | |
| 493-622, gnl|echTel1|scaffold_48976 (2017-1904) | |
| 493-622, gnl|fr1|chrUn (201006753-201006907) | |
| 493-622, gnl|galGal2|chr10 (4960406-4960249) | |
| 493-622, gnl|hg17|chr15 (61138786-61138935) | |
| 493-622, gnl|Hg17|chr15 (61138813-61138943) | |
| 493-622, gnl|loxAfr1|scaffold_153739 (790-641) | |
| 493-622, gnl|mm7|chr9 (67065494-67065344) | |
| 493-622, gnl|Mm7|chr9 (67065464-67065334) | |
| 493-622, gnl|monDom2|scaffold_12 (50772576-50772427) | |
| 493-622, gnl|oryCun1|scaffold_183267 (41985-41836) | |
| 493-622, gnl|panTro1|chr16 (61594859-61595008) | |
| 493-622, gnl|rheMac2|chr7 (41444944-41445093) | |
| 493-622, gnl|rn3|chr8 (71361991-71361841) | |
| 493-622, gnl|tetNig1|chr5 (2574971-2574825) | |
| 493-622, gnl|xenTro1|scaffold_62 (1110063-1110203) | |
| 891-2328, gnl|bosTau2|chr7 (5062199-5063638) | |
| 891-2328, gnl|Hg17|chr19 (16073072-16074810) | |
| 891-2328, gnl|Mm7|chr8 (70674751-70676148) | |
| 1265-1915, gnl|bosTau2|chr17 (28035756-28036405) | |
| 1265-1915, gnl|Hg17|chr10 (101863598-101862680) | |
| 1265-1915, gnl|Mm7|chr17 (20185253-20184637) |
| Expressed library(ies): 56 entry(ies) | More info |
| Expressed library(ies): 56 entry(ies) | Help | Less info |
| lin (1.01922) | |
| ova (0.903926) | |
| liv (0.877706) | |
| bla (0.87043) | |
| elu (0.770713) | |
| eep (0.735384) | |
| cty (0.72856) | |
| cbl (0.688784) | |
| hea (0.613497) | |
| eje (0.593003) | |
| csk (0.562984) | |
| nep (0.551775) | |
| ute (0.531138) | |
| pgl (0.473934) | |
| fat (0.442282) | |
| mas (0.42061) | |
| amn (0.417711) | |
| aor (0.390549) | |
| fty (0.351679) | |
| rec (0.346141) | |
| nje (0.33184) | |
| ski (0.29347) | |
| nca (0.273748) | |
| che (0.272628) | |
| fce (0.271592) | |
| lyg (0.266205) | |
| ret (0.257467) | |
| sug (0.254582) | |
| ese (0.253004) | |
| eru (0.240096) | |
| clu (0.239292) | |
| mgp (0.230681) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| jca (0.22792) | |
| tes (0.207814) | |
| jej (0.197844) | |
| col (0.195008) | |
| nlu (0.191681) | |
| sto (0.179824) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| nco (0.161734) | |
| csp (0.161186) | |
| tbr (0.154178) | |
| spl (0.143184) | |
| pty (0.142714) | |
| ste (0.135208) | |
| tra (0.123092) | |
| ebs (0.118301) | |
| med (0.116252) | |
| spc (0.113366) | |
| nbm (0.0993246) |
| Expressed library(ies): 56 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lin (1.01922) | |
| ova (0.903926) | |
| liv (0.877706) | |
| bla (0.87043) | |
| elu (0.770713) | |
| eep (0.735384) | |
| cty (0.72856) | |
| cbl (0.688784) | |
| hea (0.613497) | |
| eje (0.593003) | |
| csk (0.562984) | |
| nep (0.551775) | |
| ute (0.531138) | |
| pgl (0.473934) | |
| fat (0.442282) | |
| mas (0.42061) | |
| amn (0.417711) | |
| aor (0.390549) | |
| fty (0.351679) | |
| rec (0.346141) | |
| nje (0.33184) | |
| ski (0.29347) | |
| nca (0.273748) | |
| che (0.272628) | |
| fce (0.271592) | |
| lyg (0.266205) | |
| ret (0.257467) | |
| sug (0.254582) | |
| ese (0.253004) | |
| eru (0.240096) | |
| clu (0.239292) | |
| mgp (0.230681) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| jca (0.22792) | |
| tes (0.207814) | |
| jej (0.197844) | |
| col (0.195008) | |
| nlu (0.191681) | |
| sto (0.179824) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| nco (0.161734) | |
| csp (0.161186) | |
| tbr (0.154178) | |
| spl (0.143184) | |
| pty (0.142714) | |
| ste (0.135208) | |
| tra (0.123092) | |
| ebs (0.118301) | |
| med (0.116252) | |
| spc (0.113366) | |
| nbm (0.0993246) |