Non-Coding RNA Search

Ss1.1-Lng1-LNG010058D09.5

Sequence:


               
               CGCGCGGTCCCGCCGCCTCACGCGCGCGCCTCCCTTGCTCCCCAGCGCTCACGCTCGCGC
GCAATTCCCTCTCGCCGGCTAGCCTTCAGCCGCCGACGTCTCGGCCCCTCAGAAAGCCGG
TCGCACCATGTCTTCGCCTCCCGAGGGAAAGCTAGAGACGAAAGCAGGACACCCGCCCGC
CGTGAAAGCTGGTGGGATGCGAATTGTGCAGAAACATCCGCACTCTGGAGATGCCAAGGA
AGAGAAGGACAAGGACGACCAGGAGTGGGAAAGCCCCAGCCCACCCAAACCGACTGTGTT
CATCTCTGGAGCCATCGCCCGGGGTGATAAAGACTTTCCCCCTGCGGCTGCCCAGGTGGC
CCACCAGAAGCCCCATGCCTCCATAGACAAGCATCCATGCCCGAGAACCCAGCACATCCA
GCAGCCTCGCAAGTGATCGGCGAGCACCCACCACCCACCCTAGCCTCGGTTCCCTGACAC
TTGGTATTTCCCGACAAAGAGGACTGGCATCTTCTTCAAAACACTTCCCCGTGGAGAAAT
CCAAGACAAAGCAAAACTCCCCTTCCTTTGCCTTAAATTTCCACATCTAACACTAGAATC
AGACCCCAAACCTTGTTTGCAGGGAGTCCTGGCTGGTGTCACTTGAGGGTCCTTGGGCCT
CTTACAAGTGCCATTAGCAGAACTTACCGGACCTGAGTGAAATGAGCTTGTTCAGAGTTT
AGCTTTGTTCCCATTCATCGGCTGCCCTGTCAGTGGACTTAAAAACAAGCAGGCACAGAT
TTTGGAGGGTTAGAGGAAGGTCAGGGGAAAGCTCAGTCATTTCATGCTTTTTGGTAAGAG
GACCATAACGTCTTAACACCTAGTGGGCAGAGAAAGAGATGAAGGCATTGATTACAGGAA
GGCTGAGCAGGGGAGACTTTTGAAACAGGCAACAGCATCGCTGTATTTCCCTCCCTTGTG
TGACAAGGGATCACAGCACAGGAGACACCAAGCACTCACAGAAGGGCCACGGAAAAGCTC
ACAGCTTTGAAATGGCTCTTCTTTCCCAGGAGTCATCTTGCTGAAAATTTTGCCCAAACC
AGATCTGTCAGTGCGGGTCCCAAGTCCGGCACAGCCCCACCATCCATAATGGGTTTGTAG
GAAATCAAGGAAAACCTTCCTTCTTCAGGCATCACCTCCAGAGCTGTCTTCGGGTTCGGG
CCGTGATCACTGACCGGGTGACACATAGCTAGTCTTGGAACCCTAGAGCAAAAGCTGTTA
ACGTCCGTGGAAAGACCAGATGAAAACCTGCCCTTTGCCTCCCTAGGGAAAAGCAGAACA
CCATGTGCCATTTGAGCTAGAAAAGCCTGTTTGTCAATCAGTCAAAGTGTCCAGATTCCC
TCTAACCAAGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCGCGGTCCCGCCGCCTCACGCGCGCGCCTCCCTTGCTCCCCAGCGCTCACGCTCGCGC
GCAATTCCCTCTCGCCGGCTAGCCTTCAGCCGCCGACGTCTCGGCCCCTCAGAAAGCCGG
TCGCACCATGTCTTCGCCTCCCGAGGGAAAGCTAGAGACGAAAGCAGGACACCCGCCCGC
CGTGAAAGCTGGTGGGATGCGAATTGTGCAGAAACATCCGCACTCTGGAGATGCCAAGGA
AGAGAAGGACAAGGACGACCAGGAGTGGGAAAGCCCCAGCCCACCCAAACCGACTGTGTT
CATCTCTGGAGCCATCGCCCGGGGTGATAAAGACTTTCCCCCTGCGGCTGCCCAGGTGGC
CCACCAGAAGCCCCATGCCTCCATAGACAAGCATCCATGCCCGAGAACCCAGCACATCCA
GCAGCCTCGCAAGTGATCGGCGAGCACCCACCACCCACCCTAGCCTCGGTTCCCTGACAC
TTGGTATTTCCCGACAAAGAGGACTGGCATCTTCTTCAAAACACTTCCCCGTGGAGAAAT
CCAAGACAAAGCAAAACTCCCCTTCCTTTGCCTTAAATTTCCACATCTAACACTAGAATC
AGACCCCAAACCTTGTTTGCAGGGAGTCCTGGCTGGTGTCACTTGAGGGTCCTTGGGCCT
CTTACAAGTGCCATTAGCAGAACTTACCGGACCTGAGTGAAATGAGCTTGTTCAGAGTTT
AGCTTTGTTCCCATTCATCGGCTGCCCTGTCAGTGGACTTAAAAACAAGCAGGCACAGAT
TTTGGAGGGTTAGAGGAAGGTCAGGGGAAAGCTCAGTCATTTCATGCTTTTTGGTAAGAG
GACCATAACGTCTTAACACCTAGTGGGCAGAGAAAGAGATGAAGGCATTGATTACAGGAA
GGCTGAGCAGGGGAGACTTTTGAAACAGGCAACAGCATCGCTGTATTTCCCTCCCTTGTG
TGACAAGGGATCACAGCACAGGAGACACCAAGCACTCACAGAAGGGCCACGGAAAAGCTC
ACAGCTTTGAAATGGCTCTTCTTTCCCAGGAGTCATCTTGCTGAAAATTTTGCCCAAACC
AGATCTGTCAGTGCGGGTCCCAAGTCCGGCACAGCCCCACCATCCATAATGGGTTTGTAG
GAAATCAAGGAAAACCTTCCTTCTTCAGGCATCACCTCCAGAGCTGTCTTCGGGTTCGGG
CCGTGATCACTGACCGGGTGACACATAGCTAGTCTTGGAACCCTAGAGCAAAAGCTGTTA
ACGTCCGTGGAAAGACCAGATGAAAACCTGCCCTTTGCCTCCCTAGGGAAAAGCAGAACA
CCATGTGCCATTTGAGCTAGAAAAGCCTGTTTGTCAATCAGTCAAAGTGTCCAGATTCCC
TCTAACCAAGGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q5EAE6_BOVIN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q5EAE6_BOVIN

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               506-621, - strand, RNAz p=0.995832
               

               
               1117-1221, + strand, RNAz p=0.99908

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               506-621, - strand, RNAz p=0.995832
               

               
               1117-1221, + strand, RNAz p=0.99908

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of NM_004394, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_004394, +

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               315-1392, gnl|bosTau2|chr20 (36130000-36131095)
               

               
               315-1392, gnl|Hg17|chr5 (10734289-10733171)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               315-1392, gnl|bosTau2|chr20 (36130000-36131095)
               

               
               315-1392, gnl|Hg17|chr5 (10734289-10733171)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

Help | Less info


               
               cty (0.62448)
               

               
               cly (0.482567)
               

               
               nep (0.36785)
               

               
               nlu (0.191681)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.62448)
               

               
               cly (0.482567)
               

               
               nep (0.36785)
               

               
               nlu (0.191681)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)

	506-621, - strand, RNAz p=0.995832
	1117-1221, + strand, RNAz p=0.99908

	315-1392, gnl\|bosTau2\|chr20 (36130000-36131095)
	315-1392, gnl\|Hg17\|chr5 (10734289-10733171)

	cty (0.62448)
	cly (0.482567)
	nep (0.36785)
	nlu (0.191681)
	mcp (0.170648)
	fhi (0.169578)
	csp (0.161186)
	pla (0.133672)
	nmm (0.132802)
	eep (0.122564)