Non-Coding RNA Search

Ss1.1-Lng1-LNG010059A10.5

Sequence:


               
               ACTAGGGCGACGGTCCGGACGCCTCCCGCTTCGGGATGAATTAGCGGCGGGTTCAGCAAG
GAGGTTGTGACCCTCACGGGCTCTCCAGCTCGCCCACGCGCTGCCTACGTCGTCACGGTT
GTCCTCTACTGGCTACAGAATCATGGTGTCATGGAGAGGGATTTACTTTATACTCACTTT
GTTTTGGGGAAGCTTTTTTGGAAGCATTTTCATGCTGGGTCCTTTTTTACCTTTGATGTT
TATAAATCCGTCTTGGTATCGCTGGATCAACAACCGCCTTGTGGCCACCTGGCTCACGCT
ACCTGTGGCATTGCTGGAAACCATGTTTGGTGTAAAAGTGATTATAACAGGTGATGCGTT
TGTTCCTGGAGAAAGAAGTGTCATTATCATGAATCATCGGACAAGAATGGACTGGATGTT
CCTGTGGAATTGTCTGATGAGATATAGCTACCTCAGATTAGAGAAAATTTGCCTCAAAGC
CAGTCTCAAAAGTGTTCCTGGATTTGGTTGGGCCATGCAGGCTGCTGCCTATATCTTCAT
TCAGAGGAAATGGAAGGATGACAAGAGCCATTTTGAAGACATGATTGATTATTTTTGTAA
CATCCATGAACCACTTCAACTGCTCATATTCCCAGAAGGGACTGATCTCACAGAAAATAG
CACGGCTCGAAGTAATGAATTTGCTGAAAAGAATGGACTTCAGAAATATGAGTATGTCTT
ACATCCAAGAACTACAGGCTTTACTTTTGTCGTAGACCGTCTAAGAGAAGGTAAGAACCT
GGATGCTGTCCACGACATCACGGTGGCATACCCTCACAACATTCCTCAAACAGAGAGGCA
CCTCCTCCTCGGGGACTTTCCCAAGGAGATCCACTTCCACGTCCACCGATACCCAGTGGC
CTCCCTCCCCGCGTCCAAGGAGGACCTCCAGCTCTGGTGCCACAAGCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTAGGGCGACGGTCCGGACGCCTCCCGCTTCGGGATGAATTAGCGGCGGGTTCAGCAAG
GAGGTTGTGACCCTCACGGGCTCTCCAGCTCGCCCACGCGCTGCCTACGTCGTCACGGTT
GTCCTCTACTGGCTACAGAATCATGGTGTCATGGAGAGGGATTTACTTTATACTCACTTT
GTTTTGGGGAAGCTTTTTTGGAAGCATTTTCATGCTGGGTCCTTTTTTACCTTTGATGTT
TATAAATCCGTCTTGGTATCGCTGGATCAACAACCGCCTTGTGGCCACCTGGCTCACGCT
ACCTGTGGCATTGCTGGAAACCATGTTTGGTGTAAAAGTGATTATAACAGGTGATGCGTT
TGTTCCTGGAGAAAGAAGTGTCATTATCATGAATCATCGGACAAGAATGGACTGGATGTT
CCTGTGGAATTGTCTGATGAGATATAGCTACCTCAGATTAGAGAAAATTTGCCTCAAAGC
CAGTCTCAAAAGTGTTCCTGGATTTGGTTGGGCCATGCAGGCTGCTGCCTATATCTTCAT
TCAGAGGAAATGGAAGGATGACAAGAGCCATTTTGAAGACATGATTGATTATTTTTGTAA
CATCCATGAACCACTTCAACTGCTCATATTCCCAGAAGGGACTGATCTCACAGAAAATAG
CACGGCTCGAAGTAATGAATTTGCTGAAAAGAATGGACTTCAGAAATATGAGTATGTCTT
ACATCCAAGAACTACAGGCTTTACTTTTGTCGTAGACCGTCTAAGAGAAGGTAAGAACCT
GGATGCTGTCCACGACATCACGGTGGCATACCCTCACAACATTCCTCAAACAGAGAGGCA
CCTCCTCCTCGGGGACTTTCCCAAGGAGATCCACTTCCACGTCCACCGATACCCAGTGGC
CTCCCTCCCCGCGTCCAAGGAGGACCTCCAGCTCTGGTGCCACAAGCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61808969|ref|XP_599164.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61808969|ref|XP_599164.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               769-948, - strand, RNAz p=0.958826
               

               
               832-944, - strand, RNAz p=0.697299

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               769-948, - strand, RNAz p=0.958826
               

               
               832-944, - strand, RNAz p=0.697299

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               769-948, gnl|bosTau2|chr11 (50207891-50207712)
               

               
               769-948, gnl|canFam2|chr17 (27420669-27420907)
               

               
               769-948, gnl|danRer3|chr23 (800750-800979)
               

               
               769-948, gnl|dasNov1|scaffold_8715 (22557-22319)
               

               
               769-948, gnl|echTel1|scaffold_301554 (431-684)
               

               
               769-948, gnl|fr1|chrUn (13156978-13156756)
               

               
               769-948, gnl|galGal2|chr3 (9257691-9257936)
               

               
               769-948, gnl|hg17|chr2 (30774631-30774869)
               

               
               769-948, gnl|Hg17|chr2 (30774632-30774811)
               

               
               769-948, gnl|loxAfr1|scaffold_28421 (12929-12691)
               

               
               769-948, gnl|mm7|chr17 (71528092-71528330)
               

               
               769-948, gnl|Mm7|chr17 (71528093-71528272)
               

               
               769-948, gnl|monDom2|scaffold_1 (144291973-144291735)
               

               
               769-948, gnl|oryCun1|scaffold_189738 (16984-17222)
               

               
               769-948, gnl|panTro1|chr12 (31775694-31775932)
               

               
               769-948, gnl|rheMac2|chr13 (30683446-30683684)
               

               
               769-948, gnl|rn3|chr6 (22293070-22292832)
               

               
               769-948, gnl|tetNig1|chr10 (8117514-8117731)
               

               
               769-948, gnl|xenTro1|scaffold_215 (181208-181444)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               769-948, gnl|bosTau2|chr11 (50207891-50207712)
               

               
               769-948, gnl|canFam2|chr17 (27420669-27420907)
               

               
               769-948, gnl|danRer3|chr23 (800750-800979)
               

               
               769-948, gnl|dasNov1|scaffold_8715 (22557-22319)
               

               
               769-948, gnl|echTel1|scaffold_301554 (431-684)
               

               
               769-948, gnl|fr1|chrUn (13156978-13156756)
               

               
               769-948, gnl|galGal2|chr3 (9257691-9257936)
               

               
               769-948, gnl|hg17|chr2 (30774631-30774869)
               

               
               769-948, gnl|Hg17|chr2 (30774632-30774811)
               

               
               769-948, gnl|loxAfr1|scaffold_28421 (12929-12691)
               

               
               769-948, gnl|mm7|chr17 (71528092-71528330)
               

               
               769-948, gnl|Mm7|chr17 (71528093-71528272)
               

               
               769-948, gnl|monDom2|scaffold_1 (144291973-144291735)
               

               
               769-948, gnl|oryCun1|scaffold_189738 (16984-17222)
               

               
               769-948, gnl|panTro1|chr12 (31775694-31775932)
               

               
               769-948, gnl|rheMac2|chr13 (30683446-30683684)
               

               
               769-948, gnl|rn3|chr6 (22293070-22292832)
               

               
               769-948, gnl|tetNig1|chr10 (8117514-8117731)
               

               
               769-948, gnl|xenTro1|scaffold_215 (181208-181444)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               cut (0.169924)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

	769-948, - strand, RNAz p=0.958826
	832-944, - strand, RNAz p=0.697299

	769-948, gnl\|bosTau2\|chr11 (50207891-50207712)
	769-948, gnl\|canFam2\|chr17 (27420669-27420907)
	769-948, gnl\|danRer3\|chr23 (800750-800979)
	769-948, gnl\|dasNov1\|scaffold_8715 (22557-22319)
	769-948, gnl\|echTel1\|scaffold_301554 (431-684)
	769-948, gnl\|fr1\|chrUn (13156978-13156756)
	769-948, gnl\|galGal2\|chr3 (9257691-9257936)
	769-948, gnl\|hg17\|chr2 (30774631-30774869)
	769-948, gnl\|Hg17\|chr2 (30774632-30774811)
	769-948, gnl\|loxAfr1\|scaffold_28421 (12929-12691)
	769-948, gnl\|mm7\|chr17 (71528092-71528330)
	769-948, gnl\|Mm7\|chr17 (71528093-71528272)
	769-948, gnl\|monDom2\|scaffold_1 (144291973-144291735)
	769-948, gnl\|oryCun1\|scaffold_189738 (16984-17222)
	769-948, gnl\|panTro1\|chr12 (31775694-31775932)
	769-948, gnl\|rheMac2\|chr13 (30683446-30683684)
	769-948, gnl\|rn3\|chr6 (22293070-22292832)
	769-948, gnl\|tetNig1\|chr10 (8117514-8117731)
	769-948, gnl\|xenTro1\|scaffold_215 (181208-181444)