Ss1.1-Lng1-LNG010060E09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCAGGGGTGCGCGCAGCCGTAAGGACGCGCTTCTCCAGTCGCGCGCCGGGACCCAGACTT TCGAGTGGGAACGGTAGACGCGCGAGGGAGGAACCCGTGGAGCATGAAGAGGCAGGGGGC CTCCTCGGAGCGGAAACGGGCGCGGATACCCTCCGGGAAGGCCGGGGCAGCAAATGGATT TCTCATGGAAGTGTGTGTTGATTCAGTGGAGTCAGCTGTAAATGCAGAAAGAGGAGGTGC CGGTCGCATTGAATTATGTTCTGGCTTATTGGAAGGAGGAACCACACCCAGCATGGGTGT CCTTCAAGTAGTGAAACAGTATGTCCAGATCCCAGTTTTTGTGATGATTCGGCCCCGTGG AGGTGATTTTTTATATTCAGATCGTGAAGTTGAGGTGATGAAGGCTGACATTCGTCTTGC TAAGCTTTATGGTGCTGATGGTTTGGTATTTGGGGCATTGACTGAAGATGGACACATTGA CAAAGAACTGTGCATGTCCCTTGTGGCCATTTGCCGTCCTCTGCCAGTCACTTTCCACCG AGCCTTTGACATGGTTCATGATCCAATGGCAGCTCTAGAGACCCTCCTAACTTTGGGATT TGAACGAGTATTGACCAGTGGATGTGACAGTTCGGCACTAGAAGGGCTACCCCTAATAAA GCGACTTATAGAACAGGCAAAAGGCAGGATTGTGGTAATGCCAGGGGGTGGCATAACAGA CAGAAATCTACAAAGGATCCTCGAGGGTTCAGGTGCTACTGAATTCCACTGTTCTGCTCG GTCGGCTAGAGATTCAGGAATGAAGTTTCGAAATTCCTCGGTTGCTATGGGAGCCTCTCT TTCTAGCTCAGAATATTCTCTAAAGGTAGCAGATGTGACCAAAGTAAGGACTTTGAATGC TATTGCAAAGAATATTCTGGTTTAGCCAGACCTCTGAGAGACACGGACATCACAGGACAA AGGTAGAAGAGTAGTCTACAATTCTCTGTGACCCAGCTTTAACCTTCTCTGGACAGGACA GTCACAGTCTTTAAGTTTCATACTACCATGGAGAATGTTTCCAAGAAGGAAAAGAACTTG AAACAGAGCACAGTCACTTCCTTTGCTTAATTTTGCCAGTCATCTTTGTCATCGTGATTA AAATCTGGTCTACACTTCTTGCACAGACAGAGGCATAGTCTGTTTTCAGTGGAATTAATT AATGAACTGGAAAAATTCAACTGCAAGGTATGAATTCAGATGTGACTTCATGGTCAACTC AATAGCAGTATTTTGCCTTTTTATTTAAAATAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCAGGGGTGCGCGCAGCCGTAAGGACGCGCTTCTCCAGTCGCGCGCCGGGACCCAGACTT TCGAGTGGGAACGGTAGACGCGCGAGGGAGGAACCCGTGGAGCATGAAGAGGCAGGGGGC CTCCTCGGAGCGGAAACGGGCGCGGATACCCTCCGGGAAGGCCGGGGCAGCAAATGGATT TCTCATGGAAGTGTGTGTTGATTCAGTGGAGTCAGCTGTAAATGCAGAAAGAGGAGGTGC CGGTCGCATTGAATTATGTTCTGGCTTATTGGAAGGAGGAACCACACCCAGCATGGGTGT CCTTCAAGTAGTGAAACAGTATGTCCAGATCCCAGTTTTTGTGATGATTCGGCCCCGTGG AGGTGATTTTTTATATTCAGATCGTGAAGTTGAGGTGATGAAGGCTGACATTCGTCTTGC TAAGCTTTATGGTGCTGATGGTTTGGTATTTGGGGCATTGACTGAAGATGGACACATTGA CAAAGAACTGTGCATGTCCCTTGTGGCCATTTGCCGTCCTCTGCCAGTCACTTTCCACCG AGCCTTTGACATGGTTCATGATCCAATGGCAGCTCTAGAGACCCTCCTAACTTTGGGATT TGAACGAGTATTGACCAGTGGATGTGACAGTTCGGCACTAGAAGGGCTACCCCTAATAAA GCGACTTATAGAACAGGCAAAAGGCAGGATTGTGGTAATGCCAGGGGGTGGCATAACAGA CAGAAATCTACAAAGGATCCTCGAGGGTTCAGGTGCTACTGAATTCCACTGTTCTGCTCG GTCGGCTAGAGATTCAGGAATGAAGTTTCGAAATTCCTCGGTTGCTATGGGAGCCTCTCT TTCTAGCTCAGAATATTCTCTAAAGGTAGCAGATGTGACCAAAGTAAGGACTTTGAATGC TATTGCAAAGAATATTCTGGTTTAGCCAGACCTCTGAGAGACACGGACATCACAGGACAA AGGTAGAAGAGTAGTCTACAATTCTCTGTGACCCAGCTTTAACCTTCTCTGGACAGGACA GTCACAGTCTTTAAGTTTCATACTACCATGGAGAATGTTTCCAAGAAGGAAAAGAACTTG AAACAGAGCACAGTCACTTCCTTTGCTTAATTTTGCCAGTCATCTTTGTCATCGTGATTA AAATCTGGTCTACACTTCTTGCACAGACAGAGGCATAGTCTGTTTTCAGTGGAATTAATT AATGAACTGGAAAAATTCAACTGCAAGGTATGAATTCAGATGTGACTTCATGGTCAACTC AATAGCAGTATTTTGCCTTTTTATTTAAAATAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 1-177, gnl|bosTau2|chr26 (11624643-11624822) | |
| 1-177, gnl|Hg17|chr10 (101481992-101482169) | |
| 1-177, gnl|Mm7|chr19 (43646956-43647106) | |
| 296-506, gnl|bosTau2|chr26 (11638301-11638511) | |
| 296-506, gnl|canFam2|chr28 (15630990-15631231) | |
| 296-506, gnl|danRer3|chr13 (126874-126655) | |
| 296-506, gnl|dasNov1|scaffold_30819 (11398-11156) | |
| 296-506, gnl|echTel1|scaffold_298425 (105470-105229) | |
| 296-506, gnl|fr1|chrUn (117888678-117888908) | |
| 296-506, gnl|galGal2|chr6 (21271459-21271229) | |
| 296-506, gnl|hg17|chr10 (101492886-101493127) | |
| 296-506, gnl|Hg17|chr10 (101492899-101493109) | |
| 296-506, gnl|loxAfr1|scaffold_34109 (18167-18409) | |
| 296-506, gnl|mm7|chr19 (43653710-43653950) | |
| 296-506, gnl|Mm7|chr19 (43653722-43653932) | |
| 296-506, gnl|monDom2|scaffold_14 (22455614-22455373) | |
| 296-506, gnl|panTro1|chr8 (103243572-103243813) | |
| 296-506, gnl|rheMac2|chr9 (99364004-99364245) | |
| 296-506, gnl|rn3|chr1 (247185715-247185475) | |
| 296-506, gnl|tetNig1|chr17 (5019613-5019841) | |
| 296-506, gnl|xenTro1|scaffold_194 (1670333-1670092) | |
| 541-677, gnl|bosTau2|chr26 (11642083-11642219) | |
| 541-677, gnl|canFam2|chr28 (15634502-15634694) | |
| 541-677, gnl|danRer3|chr13 (124457-124304) | |
| 541-677, gnl|dasNov1|scaffold_30819 (7650-7457) | |
| 541-677, gnl|echTel1|scaffold_298425 (101956-101817) | |
| 541-677, gnl|fr1|chrUn (117889361-117889529) | |
| 541-677, gnl|galGal2|chr6 (21270445-21270256) | |
| 541-677, gnl|hg17|chr10 (101496980-101497174) | |
| 541-677, gnl|Hg17|chr10 (101497002-101497138) | |
| 541-677, gnl|loxAfr1|scaffold_6371 (68479-68673) | |
| 541-677, gnl|mm7|chr19 (43656722-43656914) | |
| 541-677, gnl|Mm7|chr19 (43656744-43656880) | |
| 541-677, gnl|monDom2|scaffold_14 (22451064-22450894) | |
| 541-677, gnl|oryCun1|scaffold_108197 (6974-7165) | |
| 541-677, gnl|panTro1|chr8 (103247668-103247862) | |
| 541-677, gnl|rheMac2|chr9 (99368457-99368651) | |
| 541-677, gnl|rn3|chr1 (247182284-247182095) | |
| 541-677, gnl|tetNig1|chr17 (5020282-5020423) | |
| 541-677, gnl|xenTro1|scaffold_194 (1669178-1669025) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-177, gnl|bosTau2|chr26 (11624643-11624822) | |
| 1-177, gnl|Hg17|chr10 (101481992-101482169) | |
| 1-177, gnl|Mm7|chr19 (43646956-43647106) | |
| 296-506, gnl|bosTau2|chr26 (11638301-11638511) | |
| 296-506, gnl|canFam2|chr28 (15630990-15631231) | |
| 296-506, gnl|danRer3|chr13 (126874-126655) | |
| 296-506, gnl|dasNov1|scaffold_30819 (11398-11156) | |
| 296-506, gnl|echTel1|scaffold_298425 (105470-105229) | |
| 296-506, gnl|fr1|chrUn (117888678-117888908) | |
| 296-506, gnl|galGal2|chr6 (21271459-21271229) | |
| 296-506, gnl|hg17|chr10 (101492886-101493127) | |
| 296-506, gnl|Hg17|chr10 (101492899-101493109) | |
| 296-506, gnl|loxAfr1|scaffold_34109 (18167-18409) | |
| 296-506, gnl|mm7|chr19 (43653710-43653950) | |
| 296-506, gnl|Mm7|chr19 (43653722-43653932) | |
| 296-506, gnl|monDom2|scaffold_14 (22455614-22455373) | |
| 296-506, gnl|panTro1|chr8 (103243572-103243813) | |
| 296-506, gnl|rheMac2|chr9 (99364004-99364245) | |
| 296-506, gnl|rn3|chr1 (247185715-247185475) | |
| 296-506, gnl|tetNig1|chr17 (5019613-5019841) | |
| 296-506, gnl|xenTro1|scaffold_194 (1670333-1670092) | |
| 541-677, gnl|bosTau2|chr26 (11642083-11642219) | |
| 541-677, gnl|canFam2|chr28 (15634502-15634694) | |
| 541-677, gnl|danRer3|chr13 (124457-124304) | |
| 541-677, gnl|dasNov1|scaffold_30819 (7650-7457) | |
| 541-677, gnl|echTel1|scaffold_298425 (101956-101817) | |
| 541-677, gnl|fr1|chrUn (117889361-117889529) | |
| 541-677, gnl|galGal2|chr6 (21270445-21270256) | |
| 541-677, gnl|hg17|chr10 (101496980-101497174) | |
| 541-677, gnl|Hg17|chr10 (101497002-101497138) | |
| 541-677, gnl|loxAfr1|scaffold_6371 (68479-68673) | |
| 541-677, gnl|mm7|chr19 (43656722-43656914) | |
| 541-677, gnl|Mm7|chr19 (43656744-43656880) | |
| 541-677, gnl|monDom2|scaffold_14 (22451064-22450894) | |
| 541-677, gnl|oryCun1|scaffold_108197 (6974-7165) | |
| 541-677, gnl|panTro1|chr8 (103247668-103247862) | |
| 541-677, gnl|rheMac2|chr9 (99368457-99368651) | |
| 541-677, gnl|rn3|chr1 (247182284-247182095) | |
| 541-677, gnl|tetNig1|chr17 (5020282-5020423) | |
| 541-677, gnl|xenTro1|scaffold_194 (1669178-1669025) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| mgm (0.360685) | |
| tbr (0.308356) | |
| liv (0.292569) | |
| kid (0.259471) | |
| bla (0.248694) | |
| aor (0.195274) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| cag (0.151194) | |
| lin (0.145603) | |
| spl (0.143184) | |
| che (0.136314) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mgm (0.360685) | |
| tbr (0.308356) | |
| liv (0.292569) | |
| kid (0.259471) | |
| bla (0.248694) | |
| aor (0.195274) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| cag (0.151194) | |
| lin (0.145603) | |
| spl (0.143184) | |
| che (0.136314) |