Non-Coding RNA Search

Ss1.1-Lng1-LNG010061H07.5.5

Sequence:


               
               TCGCGCGCAGCTCCGCCATGGCCTCCGAGGAAGCGAGTCGTAATTCTAGGTCTCGGTGGG
AGCCGGAGGGGCGCTTCCCGCGGCAGGACAAGTATTCAGTGCTTCTGCCCACCTACAATG
AGCGCGAGAACCTACCGCTTATCGTGTGGCTGCTGGTGAAGAGCTTTTCTGAGAGTGGCA
TCAACTATGAGATTATAATCATAGACGATGGAAGCCCAGATGGAACAAGGGACATTGCTG
AACAGTTGGTGAAGATCTATGGGTCAGACAAAATTCTTCTAAGGCCACGGGAGAAAAAGT
TGGGACTAGGAACTGCATATATTCATGGGATGAAGCACGCCACAGGAAACTACATAATCA
TTATGGATGCGGATCTCTCACACCATCCAAAATTTATTCCTGAATTCATTAGGAAGCAAA
AGGAAGGTAATTTTGATATTGTCTCTGGAACTCGATACAAAGGAAATGGAGGTGTATATG
GCTGGGATTTGAAAAGAAAAATAATCAGCCGTGGGGCCAATTTTATAACTCAGATTTTGC
TGAGACCAGGAGCATCTGATTTAACAGGAAGTTTCAGGTTATACCGAAAAGAAGTTTTAC
AGAAATTGATAGAAAAATGTGTTTCCAAAGGCTATGTCTTCCAGATGGAGATGATTGTTC
GGGCAAGACAGCTGAATTACACCATCGGGGAGGTTCCAATATCATTTGTGGATCGTGTTT
ATGGTGAATCCAAGTTGGGAGGAAATGAAATAGTCTCTTTCTTGAAAGGATTATTGACTC
TTTTTGCTACTACATAAAAGAAAGTTACTCATTTATACTTAATCATGTTCATTTCGGTTT
AAACCTAAAAGAAGGCCGGTTGCTGAATTTTATAAAATGTACTCTTAGAGCATAAATCAT
AAGGTAAGGTAAATTTCGTGCAAGTCTTTTTTTCCAGAGAAACTCCATTTTATATGGCAA
ATTAGAAAAATGAGCAGTGTTCTCAATTTTCTTTTACATTTTGCTGTATCGAGGCCTGTA
AATAAATGTATATGGGATGTTTGCATAAAATATTACTGCTTTCATTAGAGTTTGCAAATG
TAGAATTTGTTACATGGGCACGATTTTGAAGTACCCTTATAAAAACTGGATTCGTACCTA
ATAGGGGTCAGAAGTAAGAGGAGTTCTAGTTATATTCATGAAATATATATGGCTCTTTCT
GTATGAATTGAAAAAAAAATATACACCTTAGCCCTTTCTCTAAAAGTGTATCTCAAATTT
CTTAAACCAGATAATACATTTTGAGCACAGTTTTAGAATTTGGTTCTTCGCAGTTGTTGA
TGAAGCATTTCATCTGTCAGAGCAAGTCTATTTCAAATACATATTGTGAATTAGAAACAA
CTTGACAGCAGTTGCTTGCAGAACTGTTTTTTTCTCTTTTGAGCAGTAACTTTTCTCAGT
AAGGAAAAATATTGATGACATTAAGGCATAAATTAGCTGCTGTGGTCATTTTTAAACATC
TTAACTATATTCTTTTTCTCAGAGTATTTGTGTTCATATTCTTTCAGGACCATTAACAAA
GCATACATCATTAGTAATGTGGCAAAAATTCCCTATAGCTCTTCTGTTTATTCAGAAAAC
TGTTCTGCCAGTTAAAATGCAGGTTATGTTCTTCAGTAAAGCCAGCACAAATACTCCATT
TACTTAGCTTCTACAGATATTGCCCCAAAGAGCTATTTTCAGCTATAACATAGCTTTTAG
ATCATGCAGTATTTTTTTTACAATTCTGAGTAAGATACATTCAGCAAATACAAGTTGACT
CTCCTTTGCAAGTAAAAGGAAGGGGTGTGTCTGTGTGATTTAATAAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGCGCGCAGCTCCGCCATGGCCTCCGAGGAAGCGAGTCGTAATTCTAGGTCTCGGTGGG
AGCCGGAGGGGCGCTTCCCGCGGCAGGACAAGTATTCAGTGCTTCTGCCCACCTACAATG
AGCGCGAGAACCTACCGCTTATCGTGTGGCTGCTGGTGAAGAGCTTTTCTGAGAGTGGCA
TCAACTATGAGATTATAATCATAGACGATGGAAGCCCAGATGGAACAAGGGACATTGCTG
AACAGTTGGTGAAGATCTATGGGTCAGACAAAATTCTTCTAAGGCCACGGGAGAAAAAGT
TGGGACTAGGAACTGCATATATTCATGGGATGAAGCACGCCACAGGAAACTACATAATCA
TTATGGATGCGGATCTCTCACACCATCCAAAATTTATTCCTGAATTCATTAGGAAGCAAA
AGGAAGGTAATTTTGATATTGTCTCTGGAACTCGATACAAAGGAAATGGAGGTGTATATG
GCTGGGATTTGAAAAGAAAAATAATCAGCCGTGGGGCCAATTTTATAACTCAGATTTTGC
TGAGACCAGGAGCATCTGATTTAACAGGAAGTTTCAGGTTATACCGAAAAGAAGTTTTAC
AGAAATTGATAGAAAAATGTGTTTCCAAAGGCTATGTCTTCCAGATGGAGATGATTGTTC
GGGCAAGACAGCTGAATTACACCATCGGGGAGGTTCCAATATCATTTGTGGATCGTGTTT
ATGGTGAATCCAAGTTGGGAGGAAATGAAATAGTCTCTTTCTTGAAAGGATTATTGACTC
TTTTTGCTACTACATAAAAGAAAGTTACTCATTTATACTTAATCATGTTCATTTCGGTTT
AAACCTAAAAGAAGGCCGGTTGCTGAATTTTATAAAATGTACTCTTAGAGCATAAATCAT
AAGGTAAGGTAAATTTCGTGCAAGTCTTTTTTTCCAGAGAAACTCCATTTTATATGGCAA
ATTAGAAAAATGAGCAGTGTTCTCAATTTTCTTTTACATTTTGCTGTATCGAGGCCTGTA
AATAAATGTATATGGGATGTTTGCATAAAATATTACTGCTTTCATTAGAGTTTGCAAATG
TAGAATTTGTTACATGGGCACGATTTTGAAGTACCCTTATAAAAACTGGATTCGTACCTA
ATAGGGGTCAGAAGTAAGAGGAGTTCTAGTTATATTCATGAAATATATATGGCTCTTTCT
GTATGAATTGAAAAAAAAATATACACCTTAGCCCTTTCTCTAAAAGTGTATCTCAAATTT
CTTAAACCAGATAATACATTTTGAGCACAGTTTTAGAATTTGGTTCTTCGCAGTTGTTGA
TGAAGCATTTCATCTGTCAGAGCAAGTCTATTTCAAATACATATTGTGAATTAGAAACAA
CTTGACAGCAGTTGCTTGCAGAACTGTTTTTTTCTCTTTTGAGCAGTAACTTTTCTCAGT
AAGGAAAAATATTGATGACATTAAGGCATAAATTAGCTGCTGTGGTCATTTTTAAACATC
TTAACTATATTCTTTTTCTCAGAGTATTTGTGTTCATATTCTTTCAGGACCATTAACAAA
GCATACATCATTAGTAATGTGGCAAAAATTCCCTATAGCTCTTCTGTTTATTCAGAAAAC
TGTTCTGCCAGTTAAAATGCAGGTTATGTTCTTCAGTAAAGCCAGCACAAATACTCCATT
TACTTAGCTTCTACAGATATTGCCCCAAAGAGCTATTTTCAGCTATAACATAGCTTTTAG
ATCATGCAGTATTTTTTTTACAATTCTGAGTAAGATACATTCAGCAAATACAAGTTGACT
CTCCTTTGCAAGTAAAAGGAAGGGGTGTGTCTGTGTGATTTAATAAGC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61866934|ref|XP_609442.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61866934|ref|XP_609442.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               4-175, gnl|bosTau2|chr13 (59093550-59093724)
               

               
               4-175, gnl|Hg17|chr20 (49008481-49008307)
               

               
               4-175, gnl|Mm7|chr2 (168023021-168022847)
               


               
               691-1494, gnl|bosTau2|chr13 (59110243-59111021)
               

               
               691-1494, gnl|Hg17|chr20 (48985182-48984357)
               

               
               691-1494, gnl|Mm7|chr2 (168003292-168002554)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-175, gnl|bosTau2|chr13 (59093550-59093724)
               

               
               4-175, gnl|Hg17|chr20 (49008481-49008307)
               

               
               4-175, gnl|Mm7|chr2 (168023021-168022847)
               


               
               691-1494, gnl|bosTau2|chr13 (59110243-59111021)
               

               
               691-1494, gnl|Hg17|chr20 (48985182-48984357)
               

               
               691-1494, gnl|Mm7|chr2 (168003292-168002554)

Expressed library(ies): 40 entry(ies)

More info

Expressed library(ies): 40 entry(ies)

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               ret (0.643666)
               

               
               liv (0.585137)
               

               
               lin (0.582411)
               

               
               pro (0.512033)
               

               
               tra (0.492368)
               

               
               tbr (0.462535)
               

               
               isp (0.451128)
               

               
               tes (0.415628)
               

               
               jej (0.395687)
               

               
               gul (0.355177)
               

               
               csk (0.281492)
               

               
               pla (0.267344)
               

               
               ese (0.253004)
               

               
               bla (0.248694)
               

               
               eep (0.245128)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               cki (0.165235)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 40 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.643666)
               

               
               liv (0.585137)
               

               
               lin (0.582411)
               

               
               pro (0.512033)
               

               
               tra (0.492368)
               

               
               tbr (0.462535)
               

               
               isp (0.451128)
               

               
               tes (0.415628)
               

               
               jej (0.395687)
               

               
               gul (0.355177)
               

               
               csk (0.281492)
               

               
               pla (0.267344)
               

               
               ese (0.253004)
               

               
               bla (0.248694)
               

               
               eep (0.245128)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               cki (0.165235)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	4-175, gnl\|bosTau2\|chr13 (59093550-59093724)
	4-175, gnl\|Hg17\|chr20 (49008481-49008307)
	4-175, gnl\|Mm7\|chr2 (168023021-168022847)

	691-1494, gnl\|bosTau2\|chr13 (59110243-59111021)
	691-1494, gnl\|Hg17\|chr20 (48985182-48984357)
	691-1494, gnl\|Mm7\|chr2 (168003292-168002554)

	ret (0.643666)
	liv (0.585137)
	lin (0.582411)
	pro (0.512033)
	tra (0.492368)
	tbr (0.462535)
	isp (0.451128)
	tes (0.415628)
	jej (0.395687)
	gul (0.355177)
	csk (0.281492)
	pla (0.267344)
	ese (0.253004)
	bla (0.248694)
	eep (0.245128)
	ece (0.229305)
	mas (0.210305)
	hea (0.204499)
	ldo (0.194005)
	nlu (0.191681)
	mgm (0.180343)
	sto (0.179824)
	fty (0.17584)
	sin (0.174948)
	rec (0.17307)
	cki (0.165235)
	cje (0.165235)
	nco (0.161734)
	fco (0.157208)
	ski (0.146735)
	nca (0.136874)
	ste (0.135208)
	lyg (0.133103)
	nmm (0.132802)
	kid (0.129735)
	sug (0.127291)
	pgl (0.118483)
	ebs (0.118301)
	cty (0.10408)
	eje (0.0988338)