Non-Coding RNA Search

Ss1.1-Lng1-LNG010062C10.5

Sequence:


               
               TTATGAAGATGCTTATGACAAACTTTCCCCAGAAAATGAGCCCGACCTGAAAAAGCGGAT
CCGGGTGCACCTGCTCAACGCCCACGGCCTGGACGAAGCCGGCATTGACGGCGGCGGTAT
TTTCAGAGAGTTTCTCAATGAGCTACTGAAGTCGGGGTTCAACCCCAACCAGGGGTTCTT
TAAGACCACTAACGAGGGGCTTCTGTACCCCAACCCAGCTGCTCACATGCTCGTGGGCGA
CTCCTTCGCCAGACATTACTACTTCCTGGGCAGGATGCTCGGCAAGGCGCTCTATGAAAA
CATGCTGGTGGAGCTGCCCTTTGCCGGCTTCTTCCTGTCCAAGCTGCTGGGGACCAGCGC
GGACGTGGACATCCACCACCTGGCCTCCTTGGACCCGGAGGTGTACAGGAACTTGCTCTT
TCTCAAGAGCTACGAAGGCGACGTGGAGGAGCTCGGGCTGAACTTCACCGTGGTGAACAA
CGACCTGGGAGAGGCACAGGTGAGCGGGGCCCCCCTGCAGGCGGAGGCGCGTGCCGTCTG
TGGGCGTGCTTCTGCACACCCCAGTTAGAGCGGTTCCGGGCCAAGAGCTAGAAATAGGGG
GCAGACGGGAGCCCCCATGCAGCAGCCCGGCCGCGGCAACGTGCTGAATCTGGAGTGGCT
CCGGATGTTCGACCAGCAGGAGATTCAGGTATTAATTTCTGGTGCCCAAGTTCCCATAAG
TCTGGAGGACCTCAAATCCTTTACGAACTATTCAGGGGGCTATTCTGCTGACCACCCCGT
GATCAGGGCCTTCTGGAGAGTGGTGGAAGGGTTCACGGATGAAGAGAAGCGCAAACTGCT
CAAGTTTGTGACCAGCTGCTCCCGGCCCCCGCTCCTGGGGTTTAAGGAGCTGTACCCCGC
GTTCTGCATCCACAACGGCGGCTCCGACCTGGAGCGGCTGCCCACGGCCAGCACCTGCAT
GAACCTGCTCAAGCTGCCCGAGTTCCACGACGAGGCGCTGCTGCGGAGCAAGCTGCTCTA
TGCCATCGAGTGCGCGGCAGGCTTCGAGCTGAGCTGAGCCAACCGCGCCGCGTCGCCCGG
CCCCGGCCCCGGGCCCCGACGGAGAGGGCGCAGGGCCTCCGCGCTGCCCGGGCCGAGGAG
GGCGCCCGGGCCGACGCCCGGAGCTGCCGCGGGCCTATCTCCCCGCCACCCCCTCCCGGC
ATTTTTTTAGTGATTCCTTAAGTTGTGCTCACGTAGAGGGTGAAGTAAGTTAAAAACAGA
TGTATGTGCCGCGGGGCTCACGTAGTCGTTTTGCCAAGAAGAGCACAGTTTGCAGACGAG
TGGCGACTCAGTGAAACTAACCAAAGACGAAGCTTTGGCTCAGCGGAGCCCCGGGGCCCC
TTGGAGCCGCCCCTGCTCCCGCTCCCGCTCCCGCTCCCGCTCCGGCTCCGCTGCGGGGCG
CCGGCCGGAGGGGGGAGGCGCTCCCTCCCAGCGCCACTGCTTCTCGTGTGGTTGAATTGT
TTACAAGCCGAATTGTTAAACGAAAGGCATTTTCTTTTCCTGCTGCCTTTTCCCAAAGTG
GTTAGGTTTGGAAAATAGGTAACAATGGTGATCTTTTATTTGTGTTTTTAAGCCATCTCC
CCACCATGGGACTAGCATGCTTGTTCCCGGTGTGCCCCCGACCTGCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTATGAAGATGCTTATGACAAACTTTCCCCAGAAAATGAGCCCGACCTGAAAAAGCGGAT
CCGGGTGCACCTGCTCAACGCCCACGGCCTGGACGAAGCCGGCATTGACGGCGGCGGTAT
TTTCAGAGAGTTTCTCAATGAGCTACTGAAGTCGGGGTTCAACCCCAACCAGGGGTTCTT
TAAGACCACTAACGAGGGGCTTCTGTACCCCAACCCAGCTGCTCACATGCTCGTGGGCGA
CTCCTTCGCCAGACATTACTACTTCCTGGGCAGGATGCTCGGCAAGGCGCTCTATGAAAA
CATGCTGGTGGAGCTGCCCTTTGCCGGCTTCTTCCTGTCCAAGCTGCTGGGGACCAGCGC
GGACGTGGACATCCACCACCTGGCCTCCTTGGACCCGGAGGTGTACAGGAACTTGCTCTT
TCTCAAGAGCTACGAAGGCGACGTGGAGGAGCTCGGGCTGAACTTCACCGTGGTGAACAA
CGACCTGGGAGAGGCACAGGTGAGCGGGGCCCCCCTGCAGGCGGAGGCGCGTGCCGTCTG
TGGGCGTGCTTCTGCACACCCCAGTTAGAGCGGTTCCGGGCCAAGAGCTAGAAATAGGGG
GCAGACGGGAGCCCCCATGCAGCAGCCCGGCCGCGGCAACGTGCTGAATCTGGAGTGGCT
CCGGATGTTCGACCAGCAGGAGATTCAGGTATTAATTTCTGGTGCCCAAGTTCCCATAAG
TCTGGAGGACCTCAAATCCTTTACGAACTATTCAGGGGGCTATTCTGCTGACCACCCCGT
GATCAGGGCCTTCTGGAGAGTGGTGGAAGGGTTCACGGATGAAGAGAAGCGCAAACTGCT
CAAGTTTGTGACCAGCTGCTCCCGGCCCCCGCTCCTGGGGTTTAAGGAGCTGTACCCCGC
GTTCTGCATCCACAACGGCGGCTCCGACCTGGAGCGGCTGCCCACGGCCAGCACCTGCAT
GAACCTGCTCAAGCTGCCCGAGTTCCACGACGAGGCGCTGCTGCGGAGCAAGCTGCTCTA
TGCCATCGAGTGCGCGGCAGGCTTCGAGCTGAGCTGAGCCAACCGCGCCGCGTCGCCCGG
CCCCGGCCCCGGGCCCCGACGGAGAGGGCGCAGGGCCTCCGCGCTGCCCGGGCCGAGGAG
GGCGCCCGGGCCGACGCCCGGAGCTGCCGCGGGCCTATCTCCCCGCCACCCCCTCCCGGC
ATTTTTTTAGTGATTCCTTAAGTTGTGCTCACGTAGAGGGTGAAGTAAGTTAAAAACAGA
TGTATGTGCCGCGGGGCTCACGTAGTCGTTTTGCCAAGAAGAGCACAGTTTGCAGACGAG
TGGCGACTCAGTGAAACTAACCAAAGACGAAGCTTTGGCTCAGCGGAGCCCCGGGGCCCC
TTGGAGCCGCCCCTGCTCCCGCTCCCGCTCCCGCTCCCGCTCCGGCTCCGCTGCGGGGCG
CCGGCCGGAGGGGGGAGGCGCTCCCTCCCAGCGCCACTGCTTCTCGTGTGGTTGAATTGT
TTACAAGCCGAATTGTTAAACGAAAGGCATTTTCTTTTCCTGCTGCCTTTTCCCAAAGTG
GTTAGGTTTGGAAAATAGGTAACAATGGTGATCTTTTATTTGTGTTTTTAAGCCATCTCC
CCACCATGGGACTAGCATGCTTGTTCCCGGTGTGCCCCCGACCTGCAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|5788106|gb|AAD51453.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|5788106|gb|AAD51453.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               38-236, - strand, RNAz p=0.652617

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               38-236, - strand, RNAz p=0.652617

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               38-287, gnl|bosTau2|chr4 (69082912-69082663)
               

               
               38-287, gnl|Hg17|chr7 (156523249-156523498)
               

               
               38-287, gnl|Mm7|chr5 (28679320-28679569)
               


               
               885-1668, gnl|bosTau2|chr4 (69039127-69038351)
               

               
               885-1668, gnl|Hg17|chr7 (156559753-156560547)
               

               
               885-1668, gnl|Mm7|chr5 (28707309-28708051)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               38-287, gnl|bosTau2|chr4 (69082912-69082663)
               

               
               38-287, gnl|Hg17|chr7 (156523249-156523498)
               

               
               38-287, gnl|Mm7|chr5 (28679320-28679569)
               


               
               885-1668, gnl|bosTau2|chr4 (69039127-69038351)
               

               
               885-1668, gnl|Hg17|chr7 (156559753-156560547)
               

               
               885-1668, gnl|Mm7|chr5 (28707309-28708051)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               mas (0.210305)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               ebs (0.118301)

	38-287, gnl\|bosTau2\|chr4 (69082912-69082663)
	38-287, gnl\|Hg17\|chr7 (156523249-156523498)
	38-287, gnl\|Mm7\|chr5 (28679320-28679569)

	885-1668, gnl\|bosTau2\|chr4 (69039127-69038351)
	885-1668, gnl\|Hg17\|chr7 (156559753-156560547)
	885-1668, gnl\|Mm7\|chr5 (28707309-28708051)