Non-Coding RNA Search

Ss1.1-Lng1-LNG010062G02.5

Sequence:


               
               ATGTGAAATGATGAATCACTTCGTTGTTTGAAAGCAGTACAGCCAGCCAGCCAGCCACGC
CATGATCTGGATCTTGCAACCCACCTATCTTATTTTTCAACCAGGAAAATCCTTTTAAAG
AGATAAATGTGAATTCCCGGTGCCGTGTATATATTTGTGCCACATTTAATTTCATTAGCT
ATAATATCACATAGCTGCGCTGATTTAACTGCTCTGACCAGATGGTAATGCCGTCTGAAG
AAAAATGGTTCCACGATGTAATTGAACATGTCCTGTTGACAGAGTTACAATGACCCATTT
TCCCAATTAAATATAGGTGATTCAGTAAAATCAACACCGGGTCTATTTCTCTGCCACCAC
GTCTAGCTCAGAACAGAAGGGAGGAATCGTGCTCCAGGGCAGACGCGATGCACGGGTGAC
GGGAGTAGCCTGGGGGCAGGAATAAAGGCAGGCCTCCCCTCCCACTCTGGGCAGAAGAGA
AGTGGCTGTTGATACCTAGATTTGGCCAGTGACCAAGGGGAGAGGCTTGGCTTTCTTAGT
TACGACGCTTCTGAAAGTGATGATGAAAGCGGACGTGAACATCATGACAAGTAGCCGGTA
CATTGTGAAACATGTTGGCCTCTGAGTGGAACCAAGTGTAGCAGAAACATGGGTGTTGAC
TCTGGGCAGATGAGGGTGTTGGTTTTTATGACTGTTTTCAATCAATACAATTCATGTATC
AAAACAAGCATCTGACGAATCTGTCACTGAAAATATTTTTGCAGGTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGTGAAATGATGAATCACTTCGTTGTTTGAAAGCAGTACAGCCAGCCAGCCAGCCACGC
CATGATCTGGATCTTGCAACCCACCTATCTTATTTTTCAACCAGGAAAATCCTTTTAAAG
AGATAAATGTGAATTCCCGGTGCCGTGTATATATTTGTGCCACATTTAATTTCATTAGCT
ATAATATCACATAGCTGCGCTGATTTAACTGCTCTGACCAGATGGTAATGCCGTCTGAAG
AAAAATGGTTCCACGATGTAATTGAACATGTCCTGTTGACAGAGTTACAATGACCCATTT
TCCCAATTAAATATAGGTGATTCAGTAAAATCAACACCGGGTCTATTTCTCTGCCACCAC
GTCTAGCTCAGAACAGAAGGGAGGAATCGTGCTCCAGGGCAGACGCGATGCACGGGTGAC
GGGAGTAGCCTGGGGGCAGGAATAAAGGCAGGCCTCCCCTCCCACTCTGGGCAGAAGAGA
AGTGGCTGTTGATACCTAGATTTGGCCAGTGACCAAGGGGAGAGGCTTGGCTTTCTTAGT
TACGACGCTTCTGAAAGTGATGATGAAAGCGGACGTGAACATCATGACAAGTAGCCGGTA
CATTGTGAAACATGTTGGCCTCTGAGTGGAACCAAGTGTAGCAGAAACATGGGTGTTGAC
TCTGGGCAGATGAGGGTGTTGGTTTTTATGACTGTTTTCAATCAATACAATTCATGTATC
AAAACAAGCATCTGACGAATCTGTCACTGAAAATATTTTTGCAGGTAC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               79-197, - strand, RNAz p=0.772497
               

               
               238-357, - strand, RNAz p=0.60282

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-197, - strand, RNAz p=0.772497
               

               
               238-357, - strand, RNAz p=0.60282

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               286-403, - strand, RNAmicro p=0.981548

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               286-403, - strand, RNAmicro p=0.981548

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-709, gnl|bosTau2|chr25 (26544240-26543536)
               

               
               1-709, gnl|Hg17|chr7 (69233215-69233934)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-709, gnl|bosTau2|chr25 (26544240-26543536)
               

               
               1-709, gnl|Hg17|chr7 (69233215-69233934)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               sug (0.127291)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.127291)

	79-197, - strand, RNAz p=0.772497
	238-357, - strand, RNAz p=0.60282

	1-709, gnl\|bosTau2\|chr25 (26544240-26543536)
	1-709, gnl\|Hg17\|chr7 (69233215-69233934)