Non-Coding RNA Search

Ss1.1-Lng1-LNG010064C02.5

Sequence:


               
               AATTGGATTGTGGGCTCCAAACCCGCGGAGGCTGTACCTGGATCTGACTCTCTGAAGGGT
TGTCTTCCCTTCCTCGCCAGCAAGGTGAGCGTCCGGCTTGGGTCCCGGCTCTGGCGGCGG
GCATGATGGAGCCGCTGGCTTTGCGCCGGGGGTTCCTGGGACCGGGGTGCCTGTGAGATC
CCGCTCCTGCGCACTGAAGGTGCGGAGGGCCGCCGTCTCCTCCCACCTGACCCCGCTGGA
GCATCGGCCCCTCTGCTCCCTCTGCTCCCTCTGCTCCCGGTAAAAGTCGGCTAGCACTAG
GGTCCAGAGACCCTGCTCGGTCACGGCCTCGCCCTTTGGGGAATCAGTTTCCTCCTCTGT
AACGCGGAAGACTAGGAGATCAGCGTTTATTTGTAAATGTTTGAATAATAAAGAGAGGAG
AGCAAAATGAGCTGGGCTTTGGAAGAATGGAAGGAAGGCCTGCCTACCAGAGCTCTTCAG
AAAATCCAGGAGCTTGAAGGACAGCTGGACAAACTGAAGAAAGAAAGGCAGCAAAGGCAG
TTTCAGCTTGAAACCCTGGAGGCTGCGTTGCAGAAGCAAAAACAGAAGGTCGAGAATGAA
AAAACTGAGGGTGCAAATCTGAAAAGGGAGAACCAAAGCTTGATGGAAATCTGTGAAAAT
CTGGAGAAGACTAAGCAGAAGATTTCTCATGAACTTCAAGTCAAGGAGTCACAGGTGAAT
TTCCAAGAAGGACAACTGAACTCCAGCAAAAAACAAATAGAAAAACTGGAACAGGAACTT
AAAAGGTGTAAATCTGAACTTGAAAGAAGCCAACAGGCTGCCCAGTCTGCAGATGTGTCT
CTGAATCCATGCATTACACCACAAAAAGTTTTTACAACTCCACTCACACCAAGCCAGTAT
TACAGCGGTTCCAAATATGAAGATCTAAAAGAAAAATATAATAAAGAAGTCGAAGAACGA
AAAAGATTAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTGGATTGTGGGCTCCAAACCCGCGGAGGCTGTACCTGGATCTGACTCTCTGAAGGGT
TGTCTTCCCTTCCTCGCCAGCAAGGTGAGCGTCCGGCTTGGGTCCCGGCTCTGGCGGCGG
GCATGATGGAGCCGCTGGCTTTGCGCCGGGGGTTCCTGGGACCGGGGTGCCTGTGAGATC
CCGCTCCTGCGCACTGAAGGTGCGGAGGGCCGCCGTCTCCTCCCACCTGACCCCGCTGGA
GCATCGGCCCCTCTGCTCCCTCTGCTCCCTCTGCTCCCGGTAAAAGTCGGCTAGCACTAG
GGTCCAGAGACCCTGCTCGGTCACGGCCTCGCCCTTTGGGGAATCAGTTTCCTCCTCTGT
AACGCGGAAGACTAGGAGATCAGCGTTTATTTGTAAATGTTTGAATAATAAAGAGAGGAG
AGCAAAATGAGCTGGGCTTTGGAAGAATGGAAGGAAGGCCTGCCTACCAGAGCTCTTCAG
AAAATCCAGGAGCTTGAAGGACAGCTGGACAAACTGAAGAAAGAAAGGCAGCAAAGGCAG
TTTCAGCTTGAAACCCTGGAGGCTGCGTTGCAGAAGCAAAAACAGAAGGTCGAGAATGAA
AAAACTGAGGGTGCAAATCTGAAAAGGGAGAACCAAAGCTTGATGGAAATCTGTGAAAAT
CTGGAGAAGACTAAGCAGAAGATTTCTCATGAACTTCAAGTCAAGGAGTCACAGGTGAAT
TTCCAAGAAGGACAACTGAACTCCAGCAAAAAACAAATAGAAAAACTGGAACAGGAACTT
AAAAGGTGTAAATCTGAACTTGAAAGAAGCCAACAGGCTGCCCAGTCTGCAGATGTGTCT
CTGAATCCATGCATTACACCACAAAAAGTTTTTACAACTCCACTCACACCAAGCCAGTAT
TACAGCGGTTCCAAATATGAAGATCTAAAAGAAAAATATAATAAAGAAGTCGAAGAACGA
AAAAGATTAGAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61885513|ref|XP_589496.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61885513|ref|XP_589496.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               114-216, + strand, RNAz p=0.8489

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               114-216, + strand, RNAz p=0.8489

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-318, gnl|bosTau2|chr16 (51225731-51226057)
               

               
               1-318, gnl|Hg17|chr1 (211164977-211165323)
               


               
               587-787, gnl|bosTau2|chr16 (51229733-51229933)
               

               
               587-787, gnl|Hg17|chr1 (211176568-211176768)
               

               
               587-787, gnl|Mm7|chr1 (189216278-189216078)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-318, gnl|bosTau2|chr16 (51225731-51226057)
               

               
               1-318, gnl|Hg17|chr1 (211164977-211165323)
               


               
               587-787, gnl|bosTau2|chr16 (51229733-51229933)
               

               
               587-787, gnl|Hg17|chr1 (211176568-211176768)
               

               
               587-787, gnl|Mm7|chr1 (189216278-189216078)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cmu (0.186393)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.186393)

	1-318, gnl\|bosTau2\|chr16 (51225731-51226057)
	1-318, gnl\|Hg17\|chr1 (211164977-211165323)

	587-787, gnl\|bosTau2\|chr16 (51229733-51229933)
	587-787, gnl\|Hg17\|chr1 (211176568-211176768)
	587-787, gnl\|Mm7\|chr1 (189216278-189216078)