Non-Coding RNA Search

Ss1.1-Lng1-LNG010064F11.5

Sequence:


               
               GAAGCGCTTCCGGCGTCTTGACCCACTAATCAACACACCAGCCTTCCGGGCCTAACTCGA
CCCTCGCCTCGGGCCTCTCGGAGTCGTACGGCAGCTCAGCACCGCTCCTGACACGCGGCA
CTCCCTAGTGGAGCCTTCTTCCCTCCGTCCAGGTTCAAATCTCCCCGTGTTTGGGTTGCT
CTAGCACTAGGCGACCCCAGGACCCTGTGATTGGCGCCCGCGTCTGCTGATGCCGACGAG
GTCCCCATAGGAATTTGGGCATTGCTTGGGCTTGGTGCCTGTCCTTCGTGCTCCTTTCGG
TGAAGTTAGGGGAGAGGACGATTTTTGTTGTCACTTGATAAATTCATTTACTCGTTTGTT
CTTTCACTCTTTCTGAAACCGATTAATGAGCCATCACAGTGTAGTTGTTAAAATAGAGAA
AACGCTGTAGCCTGACCATTTTCCCTTCAGCCACTTCTGACCTTAGGCAATACAGTAGGC
CTCAGTGTCCGTCTCTGGAAAATGGGATAATAATAGTACCTACTTCATAACGGTAGTTGG
GAGAATTGAATTAAACAGTAAAGCCTGGTAGGTAATAGGCACTCAGCAAATTTTAGGCAC
TCAACCAAGATCGTAGTTGTGAAGGATATGTGGAAGAGTAAAATTGAGATAAGTACAATT
TTAAATCCAGGGAGAAATGCTGTGATGGAGACATGCAAAGTGCTGTGAGGATATAATGAA
GGGAGATGTCCTGGGGAGGTGATGGAGAGAGTGACTTAAGCCATACTTAAGAATGAACAT
ATGGAGTTCCTGTCATGACTCAGTGGTTAACGAGCCCGACTACTATCCATGAGGAAGGGG
GTTCAATCCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGCGCTTCCGGCGTCTTGACCCACTAATCAACACACCAGCCTTCCGGGCCTAACTCGA
CCCTCGCCTCGGGCCTCTCGGAGTCGTACGGCAGCTCAGCACCGCTCCTGACACGCGGCA
CTCCCTAGTGGAGCCTTCTTCCCTCCGTCCAGGTTCAAATCTCCCCGTGTTTGGGTTGCT
CTAGCACTAGGCGACCCCAGGACCCTGTGATTGGCGCCCGCGTCTGCTGATGCCGACGAG
GTCCCCATAGGAATTTGGGCATTGCTTGGGCTTGGTGCCTGTCCTTCGTGCTCCTTTCGG
TGAAGTTAGGGGAGAGGACGATTTTTGTTGTCACTTGATAAATTCATTTACTCGTTTGTT
CTTTCACTCTTTCTGAAACCGATTAATGAGCCATCACAGTGTAGTTGTTAAAATAGAGAA
AACGCTGTAGCCTGACCATTTTCCCTTCAGCCACTTCTGACCTTAGGCAATACAGTAGGC
CTCAGTGTCCGTCTCTGGAAAATGGGATAATAATAGTACCTACTTCATAACGGTAGTTGG
GAGAATTGAATTAAACAGTAAAGCCTGGTAGGTAATAGGCACTCAGCAAATTTTAGGCAC
TCAACCAAGATCGTAGTTGTGAAGGATATGTGGAAGAGTAAAATTGAGATAAGTACAATT
TTAAATCCAGGGAGAAATGCTGTGATGGAGACATGCAAAGTGCTGTGAGGATATAATGAA
GGGAGATGTCCTGGGGAGGTGATGGAGAGAGTGACTTAAGCCATACTTAAGAATGAACAT
ATGGAGTTCCTGTCATGACTCAGTGGTTAACGAGCCCGACTACTATCCATGAGGAAGGGG
GTTCAATCCCTG

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               1-530, gnl|bosTau2|chr11 (52828046-52828581)
               

               
               1-530, gnl|Hg17|chr2 (27798152-27797474)
               

               
               1-530, gnl|Mm7|chr5 (30559249-30558765)
               


               
               536-777, gnl|bosTau2|chr11 (52828609-52828845)
               

               
               536-777, gnl|Hg17|chr2 (27797417-27797053)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-530, gnl|bosTau2|chr11 (52828046-52828581)
               

               
               1-530, gnl|Hg17|chr2 (27798152-27797474)
               

               
               1-530, gnl|Mm7|chr5 (30559249-30558765)
               


               
               536-777, gnl|bosTau2|chr11 (52828609-52828845)
               

               
               536-777, gnl|Hg17|chr2 (27797417-27797053)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               spl (0.143184)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)

	1-530, gnl\|bosTau2\|chr11 (52828046-52828581)
	1-530, gnl\|Hg17\|chr2 (27798152-27797474)
	1-530, gnl\|Mm7\|chr5 (30559249-30558765)

	536-777, gnl\|bosTau2\|chr11 (52828609-52828845)
	536-777, gnl\|Hg17\|chr2 (27797417-27797053)