Ss1.1-Lng1-LNG010065D07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGCCCAGAGGGTGGGTGCTGATTCCACCAGCTGCTGCATCTGTAAAGCCAGGTTCAGAA ATGTCAGATATCCTTCGGGAGCTGCTCTGTGTCTCTGAGAAAGCTGCCAACATTGCCCGG GCATGCAGGCAGCAGGAAGCCCTCTTCCAGCTGCTGATAGAAGAAAAGAAAGAGGGAGAA AAGAACAAGAAGTTTGCAGTTGATTTCAAGACCCTGGCTGATGTACTGGTACAGGAAGTT ATAAAACAGAATATGGAGAACAAGTTTCCAGGCTTGGGGAAAAAAATTTTTGGAGAAGAA TCCAATGAATTTACTAATGATTTGGGGGAAAAGATCATCATGAGACTGTGTCCAACAGAG GAAGAAACAGTAGATCTTCTCAACAAAGTCCTTAATGGTAACAAGTTGGCATCTGAAGCA TTAGCGAAGGTGGTACATCAGGACGTCGTCTTTACTGACCCAGCTCTGGATTTGGTAGAG ATCAACATTCCACAGGACATTTTGGGAATTTGGGTAGATCCCATAGATTCAACTTATCAG TATATAAAAGGTTCTGCTGACATTAAATCCAACCAAGGAATCTTTCCAAGTGGACTTCAG TGTGTCACTATTTTAATTGGTGTCTATGACATACACACAGGGGTGCCCCTGATGGGAGTT ATCAACCAACCTTTTGTATCGCAAGACTTAAACACCCTCAGGTGGAAAGGACAGTGCTAC TGGGGCCTTTCTTACATGGGGACCAACATCCATTCACTTCTGCCTTCCATCTCTACAAGA AACAGCAGGGAAACGCATAGCCAAGAGCCCAAACCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGCCCAGAGGGTGGGTGCTGATTCCACCAGCTGCTGCATCTGTAAAGCCAGGTTCAGAA ATGTCAGATATCCTTCGGGAGCTGCTCTGTGTCTCTGAGAAAGCTGCCAACATTGCCCGG GCATGCAGGCAGCAGGAAGCCCTCTTCCAGCTGCTGATAGAAGAAAAGAAAGAGGGAGAA AAGAACAAGAAGTTTGCAGTTGATTTCAAGACCCTGGCTGATGTACTGGTACAGGAAGTT ATAAAACAGAATATGGAGAACAAGTTTCCAGGCTTGGGGAAAAAAATTTTTGGAGAAGAA TCCAATGAATTTACTAATGATTTGGGGGAAAAGATCATCATGAGACTGTGTCCAACAGAG GAAGAAACAGTAGATCTTCTCAACAAAGTCCTTAATGGTAACAAGTTGGCATCTGAAGCA TTAGCGAAGGTGGTACATCAGGACGTCGTCTTTACTGACCCAGCTCTGGATTTGGTAGAG ATCAACATTCCACAGGACATTTTGGGAATTTGGGTAGATCCCATAGATTCAACTTATCAG TATATAAAAGGTTCTGCTGACATTAAATCCAACCAAGGAATCTTTCCAAGTGGACTTCAG TGTGTCACTATTTTAATTGGTGTCTATGACATACACACAGGGGTGCCCCTGATGGGAGTT ATCAACCAACCTTTTGTATCGCAAGACTTAAACACCCTCAGGTGGAAAGGACAGTGCTAC TGGGGCCTTTCTTACATGGGGACCAACATCCATTCACTTCTGCCTTCCATCTCTACAAGA AACAGCAGGGAAACGCATAGCCAAGAGCCCAAACCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 82-201, - strand, RNAz p=0.892011 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 82-201, - strand, RNAz p=0.892011 |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 3-264, gnl|bosTau2|chr2 (3859661-3859404) | |
| 3-264, gnl|Hg17|chr2 (191050277-191050538) | |
| 3-264, gnl|Mm7|chr1 (53033052-53032807) | |
| 325-526, gnl|bosTau2|chr2 (3854273-3854072) | |
| 325-526, gnl|canFam2|chr37 (3981398-3981633) | |
| 325-526, gnl|danRer3|chrNA (222574281-222574059) | |
| 325-526, gnl|dasNov1|scaffold_38480 (7039-6804) | |
| 325-526, gnl|echTel1|scaffold_276234 (43302-43537) | |
| 325-526, gnl|hg17|chr2 (191056909-191057144) | |
| 325-526, gnl|Hg17|chr2 (191056926-191057127) | |
| 325-526, gnl|loxAfr1|scaffold_33448 (10986-11221) | |
| 325-526, gnl|mm7|chr1 (53028212-53027970) | |
| 325-526, gnl|Mm7|chr1 (53028193-53027992) | |
| 325-526, gnl|monDom2|scaffold_2 (96036878-96037093) | |
| 325-526, gnl|oryCun1|scaffold_172590 (11912-11677) | |
| 325-526, gnl|panTro1|chr13_random (22459145-22458910) | |
| 325-526, gnl|rn3|chr9 (45688003-45688245) | |
| 325-526, gnl|xenTro1|scaffold_941 (184780-184563) | |
| 700-816, gnl|bosTau2|chr2 (5675696-5675813) | |
| 700-816, gnl|canFam2|chr37 (3985217-3985444) | |
| 700-816, gnl|danRer3|chrNA (222568843-222568637) | |
| 700-816, gnl|dasNov1|scaffold_38480 (3449-3188) | |
| 700-816, gnl|echTel1|scaffold_276234 (49086-49336) | |
| 700-816, gnl|fr1|chrUn (176437477-176437281) | |
| 700-816, gnl|hg17|chr2 (191061045-191061293) | |
| 700-816, gnl|Hg17|chr2 (191061074-191061182) | |
| 700-816, gnl|loxAfr1|scaffold_33448 (14667-14919) | |
| 700-816, gnl|mm7|chr1 (53023767-53023533) | |
| 700-816, gnl|Mm7|chr1 (53023741-53023636) | |
| 700-816, gnl|monDom2|scaffold_2 (96042735-96042985) | |
| 700-816, gnl|oryCun1|scaffold_172590 (6775-6527) | |
| 700-816, gnl|panTro1|chr13_random (22455013-22454765) | |
| 700-816, gnl|rn3|chr9 (45693902-45694135) | |
| 700-816, gnl|xenTro1|scaffold_941 (175188-174949) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-264, gnl|bosTau2|chr2 (3859661-3859404) | |
| 3-264, gnl|Hg17|chr2 (191050277-191050538) | |
| 3-264, gnl|Mm7|chr1 (53033052-53032807) | |
| 325-526, gnl|bosTau2|chr2 (3854273-3854072) | |
| 325-526, gnl|canFam2|chr37 (3981398-3981633) | |
| 325-526, gnl|danRer3|chrNA (222574281-222574059) | |
| 325-526, gnl|dasNov1|scaffold_38480 (7039-6804) | |
| 325-526, gnl|echTel1|scaffold_276234 (43302-43537) | |
| 325-526, gnl|hg17|chr2 (191056909-191057144) | |
| 325-526, gnl|Hg17|chr2 (191056926-191057127) | |
| 325-526, gnl|loxAfr1|scaffold_33448 (10986-11221) | |
| 325-526, gnl|mm7|chr1 (53028212-53027970) | |
| 325-526, gnl|Mm7|chr1 (53028193-53027992) | |
| 325-526, gnl|monDom2|scaffold_2 (96036878-96037093) | |
| 325-526, gnl|oryCun1|scaffold_172590 (11912-11677) | |
| 325-526, gnl|panTro1|chr13_random (22459145-22458910) | |
| 325-526, gnl|rn3|chr9 (45688003-45688245) | |
| 325-526, gnl|xenTro1|scaffold_941 (184780-184563) | |
| 700-816, gnl|bosTau2|chr2 (5675696-5675813) | |
| 700-816, gnl|canFam2|chr37 (3985217-3985444) | |
| 700-816, gnl|danRer3|chrNA (222568843-222568637) | |
| 700-816, gnl|dasNov1|scaffold_38480 (3449-3188) | |
| 700-816, gnl|echTel1|scaffold_276234 (49086-49336) | |
| 700-816, gnl|fr1|chrUn (176437477-176437281) | |
| 700-816, gnl|hg17|chr2 (191061045-191061293) | |
| 700-816, gnl|Hg17|chr2 (191061074-191061182) | |
| 700-816, gnl|loxAfr1|scaffold_33448 (14667-14919) | |
| 700-816, gnl|mm7|chr1 (53023767-53023533) | |
| 700-816, gnl|Mm7|chr1 (53023741-53023636) | |
| 700-816, gnl|monDom2|scaffold_2 (96042735-96042985) | |
| 700-816, gnl|oryCun1|scaffold_172590 (6775-6527) | |
| 700-816, gnl|panTro1|chr13_random (22455013-22454765) | |
| 700-816, gnl|rn3|chr9 (45693902-45694135) | |
| 700-816, gnl|xenTro1|scaffold_941 (175188-174949) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pgl (0.118483) |