Ss1.1-Lng1-LNG010066A12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TAGCGCTCGGCGAAGCGGCGGCCACTTCCTCATCTGTCCGGCCGCGCGCTCCGGACGGGT CTGTCGGCCGCGGGGCGGGGCGGGGTACTGCGCGGAGCGGCTCTGCCAGCTTCTGCTTGT CTGGCTGCCAAGGGTGGACGCAGGTCCTTGAAGGCGCACCGCTGCAAGCCAGACAAAAAG AAACTTTGGGGCGCCCGGAGTGCCGAGTGGAGGGGCGTTCGTTTGGCTTTTCGTGCGTGG TCTACAGGATCAGCCGCTCCAGGAAGAGATGTCGAAGCCGCCACCCAAACCGGTCAAACC AGGGCAAGTTAAAGTATTCAGAGCTCTTTATACATTTGAACCCAGAACTCCAGATGAATT GTACTTTGAAGAAGGTGATATCATCTACATTACTGACATGAGTGATACCAATTGGTGGAA AGGCACTTCCAAAGGCAGGACTGGACTGATCCCAAGCAACTACGTGGCTGAACAGGCAGA ATCCATTGACAATCCATTGCATGAAGCTGCAAAAAGAGGCAACTTGAGCTGGTTGAGAGA GTGTTTGGACAACCGAGTTGGTGTTAATGGCTTAGACAAAGCTGGAAGCACTGCCCTATA TTGGGCTTGTCATGGGGGCCACAAAGATATAGTGGACATGCTGTTTACTCAGCCAAACAT TGAACTGAACCAGCAGAACAAGTTGGGAGATACAGCTTTGCATGCTGCTGCCTGGAAGGG TTATGCGGATATCGTCCAGTTGCTTCTGGCAAAAGGTGCTAGAACAGACTTAAGGAACAA TGAGAAGAAACTGGCCCTGGACATGGCTACTAATGCTGCCTGTGCATCTCTCCTGAAAAA GAAACAGGGAACAGATGCAGTTCGAACATTAAGCAATGCTGAAGACTATCTTGATGATGA AGACTCAGATTAATTCCCTTCCGGAGCTTTGAGATCTAAAACTTCTGTTGCTTTTGCCAT TTCAAAACCTTGTCTTTGCCAGAGGAGTGTTGGTAACTGTAAAAAAAAAAAAAAAAGAAA AAGAAAAAGTCTATATGAACATGGCAGTGTTGTACTGTGAGTAAAACATGTAAATGAATA GTTTTCACCTTCTGTTTGCCAATAAGTGACTGGATATTTTGCTGTATAAAGTACGTTGTT GTGCATCAGAGTAGAATAAGAAGAGATTATTTCTATTTATCAAGCTTAAAGGAATTTAAA AATGTTTTTCCTATAAAAAAATCAGGTTTTTTTTTGTTTTGTTTTGTTTTTTAGTTAAAG TTCTTTACCTCAAGGATTGAGTTATTTTGAATGGAGTTTTCAAGGGAGGGAATGCTTATT ATAATAATAAACCAAAAGACTTAACAGAAAATCGTCAGCTATTCTGACAAAAATAAACAT TTTAAGAGAATTTATTTCTTCTGTCTGTTTTGTGGTATCACTCTTTGCTGGTAAATAAAT AAAGACTTTTATATTCATATTTAGGTAAAGGCTGAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TAGCGCTCGGCGAAGCGGCGGCCACTTCCTCATCTGTCCGGCCGCGCGCTCCGGACGGGT CTGTCGGCCGCGGGGCGGGGCGGGGTACTGCGCGGAGCGGCTCTGCCAGCTTCTGCTTGT CTGGCTGCCAAGGGTGGACGCAGGTCCTTGAAGGCGCACCGCTGCAAGCCAGACAAAAAG AAACTTTGGGGCGCCCGGAGTGCCGAGTGGAGGGGCGTTCGTTTGGCTTTTCGTGCGTGG TCTACAGGATCAGCCGCTCCAGGAAGAGATGTCGAAGCCGCCACCCAAACCGGTCAAACC AGGGCAAGTTAAAGTATTCAGAGCTCTTTATACATTTGAACCCAGAACTCCAGATGAATT GTACTTTGAAGAAGGTGATATCATCTACATTACTGACATGAGTGATACCAATTGGTGGAA AGGCACTTCCAAAGGCAGGACTGGACTGATCCCAAGCAACTACGTGGCTGAACAGGCAGA ATCCATTGACAATCCATTGCATGAAGCTGCAAAAAGAGGCAACTTGAGCTGGTTGAGAGA GTGTTTGGACAACCGAGTTGGTGTTAATGGCTTAGACAAAGCTGGAAGCACTGCCCTATA TTGGGCTTGTCATGGGGGCCACAAAGATATAGTGGACATGCTGTTTACTCAGCCAAACAT TGAACTGAACCAGCAGAACAAGTTGGGAGATACAGCTTTGCATGCTGCTGCCTGGAAGGG TTATGCGGATATCGTCCAGTTGCTTCTGGCAAAAGGTGCTAGAACAGACTTAAGGAACAA TGAGAAGAAACTGGCCCTGGACATGGCTACTAATGCTGCCTGTGCATCTCTCCTGAAAAA GAAACAGGGAACAGATGCAGTTCGAACATTAAGCAATGCTGAAGACTATCTTGATGATGA AGACTCAGATTAATTCCCTTCCGGAGCTTTGAGATCTAAAACTTCTGTTGCTTTTGCCAT TTCAAAACCTTGTCTTTGCCAGAGGAGTGTTGGTAACTGTAAAAAAAAAAAAAAAAGAAA AAGAAAAAGTCTATATGAACATGGCAGTGTTGTACTGTGAGTAAAACATGTAAATGAATA GTTTTCACCTTCTGTTTGCCAATAAGTGACTGGATATTTTGCTGTATAAAGTACGTTGTT GTGCATCAGAGTAGAATAAGAAGAGATTATTTCTATTTATCAAGCTTAAAGGAATTTAAA AATGTTTTTCCTATAAAAAAATCAGGTTTTTTTTTGTTTTGTTTTGTTTTTTAGTTAAAG TTCTTTACCTCAAGGATTGAGTTATTTTGAATGGAGTTTTCAAGGGAGGGAATGCTTATT ATAATAATAAACCAAAAGACTTAACAGAAAATCGTCAGCTATTCTGACAAAAATAAACAT TTTAAGAGAATTTATTTCTTCTGTCTGTTTTGTGGTATCACTCTTTGCTGGTAAATAAAT AAAGACTTTTATATTCATATTTAGGTAAAGGCTGAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 2-303, gnl|bosTau2|chr8 (26092902-26092596) | |
| 2-303, gnl|Hg17|chr9 (74932900-74933197) | |
| 517-630, gnl|bosTau2|chr8 (26048685-26048572) | |
| 517-630, gnl|canFam2|chr1 (86167667-86167560) | |
| 517-630, gnl|canFam2|chr1 (86167670-86167541) | |
| 517-630, gnl|danRer3|chr12 (22729591-22729474) | |
| 517-630, gnl|dasNov1|scaffold_241537 (3345-3242) | |
| 517-630, gnl|dasNov1|scaffold_241537 (3353-3223) | |
| 517-630, gnl|echTel1|scaffold_228592 (1859-1989) | |
| 517-630, gnl|echTel1|scaffold_280492 (297-201) | |
| 517-630, gnl|fr1|chrUn (46365073-46365180) | |
| 517-630, gnl|fr1|chrUn (46365072-46365185) | |
| 517-630, gnl|hg17|chr12 (113488968-113489075) | |
| 517-630, gnl|hg17|chr9 (74977760-74977889) | |
| 517-630, gnl|Hg17|chr9 (74977762-74977875) | |
| 517-630, gnl|loxAfr1|scaffold_16756 (4710-4817) | |
| 517-630, gnl|loxAfr1|scaffold_16756 (4709-4836) | |
| 517-630, gnl|mm7|chr19 (18291442-18291314) | |
| 517-630, gnl|Mm7|chr19 (18291438-18291325) | |
| 517-630, gnl|mm7|chr4 (107064780-107064881) | |
| 517-630, gnl|monDom2|scaffold_17 (11965376-11965247) | |
| 517-630, gnl|oryCun1|scaffold_211194 (61129-61022) | |
| 517-630, gnl|oryCun1|scaffold_211194 (61132-61003) | |
| 517-630, gnl|panTro1|chr10 (116165242-116165349) | |
| 517-630, gnl|panTro1|chr11 (58856668-58856797) | |
| 517-630, gnl|rheMac2|chr11 (115511022-115511129) | |
| 517-630, gnl|rheMac2|chr15 (83914421-83914550) | |
| 517-630, gnl|rn3|chr1 (222354768-222354639) | |
| 517-630, gnl|rn3|chr13 (83075554-83075657) | |
| 517-630, gnl|tetNig1|chr12 (9248384-9248491) | |
| 517-630, gnl|tetNig1|chr12 (9248383-9248496) | |
| 853-1476, gnl|bosTau2|chr8 (26032580-26031990) | |
| 853-1476, gnl|Hg17|chr9 (74991151-74991745) | |
| 853-1476, gnl|Mm7|chr19 (18282258-18281673) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-303, gnl|bosTau2|chr8 (26092902-26092596) | |
| 2-303, gnl|Hg17|chr9 (74932900-74933197) | |
| 517-630, gnl|bosTau2|chr8 (26048685-26048572) | |
| 517-630, gnl|canFam2|chr1 (86167667-86167560) | |
| 517-630, gnl|canFam2|chr1 (86167670-86167541) | |
| 517-630, gnl|danRer3|chr12 (22729591-22729474) | |
| 517-630, gnl|dasNov1|scaffold_241537 (3345-3242) | |
| 517-630, gnl|dasNov1|scaffold_241537 (3353-3223) | |
| 517-630, gnl|echTel1|scaffold_228592 (1859-1989) | |
| 517-630, gnl|echTel1|scaffold_280492 (297-201) | |
| 517-630, gnl|fr1|chrUn (46365073-46365180) | |
| 517-630, gnl|fr1|chrUn (46365072-46365185) | |
| 517-630, gnl|hg17|chr12 (113488968-113489075) | |
| 517-630, gnl|hg17|chr9 (74977760-74977889) | |
| 517-630, gnl|Hg17|chr9 (74977762-74977875) | |
| 517-630, gnl|loxAfr1|scaffold_16756 (4710-4817) | |
| 517-630, gnl|loxAfr1|scaffold_16756 (4709-4836) | |
| 517-630, gnl|mm7|chr19 (18291442-18291314) | |
| 517-630, gnl|Mm7|chr19 (18291438-18291325) | |
| 517-630, gnl|mm7|chr4 (107064780-107064881) | |
| 517-630, gnl|monDom2|scaffold_17 (11965376-11965247) | |
| 517-630, gnl|oryCun1|scaffold_211194 (61129-61022) | |
| 517-630, gnl|oryCun1|scaffold_211194 (61132-61003) | |
| 517-630, gnl|panTro1|chr10 (116165242-116165349) | |
| 517-630, gnl|panTro1|chr11 (58856668-58856797) | |
| 517-630, gnl|rheMac2|chr11 (115511022-115511129) | |
| 517-630, gnl|rheMac2|chr15 (83914421-83914550) | |
| 517-630, gnl|rn3|chr1 (222354768-222354639) | |
| 517-630, gnl|rn3|chr13 (83075554-83075657) | |
| 517-630, gnl|tetNig1|chr12 (9248384-9248491) | |
| 517-630, gnl|tetNig1|chr12 (9248383-9248496) | |
| 853-1476, gnl|bosTau2|chr8 (26032580-26031990) | |
| 853-1476, gnl|Hg17|chr9 (74991151-74991745) | |
| 853-1476, gnl|Mm7|chr19 (18282258-18281673) |
| Expressed library(ies): 37 entry(ies) | More info |
| Expressed library(ies): 37 entry(ies) | Help | Less info |
| sin (1.04969) | |
| cst (0.840218) | |
| spl (0.429553) | |
| amn (0.417711) | |
| ova (0.387397) | |
| cmu (0.372787) | |
| ill (0.351185) | |
| rec (0.346141) | |
| mcp (0.341297) | |
| cje (0.330469) | |
| sme (0.305437) | |
| fat (0.294855) | |
| liv (0.292569) | |
| lin (0.291206) | |
| csk (0.281492) | |
| sug (0.254582) | |
| bla (0.248694) | |
| eru (0.240096) | |
| mgp (0.230681) | |
| hea (0.204499) | |
| col (0.195008) | |
| ton (0.1755) | |
| duo (0.172801) | |
| cki (0.165235) | |
| isp (0.150376) | |
| ski (0.146735) | |
| pty (0.142714) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| tra (0.123092) | |
| eep (0.122564) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| jca (0.11396) | |
| cty (0.10408) |
| Expressed library(ies): 37 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sin (1.04969) | |
| cst (0.840218) | |
| spl (0.429553) | |
| amn (0.417711) | |
| ova (0.387397) | |
| cmu (0.372787) | |
| ill (0.351185) | |
| rec (0.346141) | |
| mcp (0.341297) | |
| cje (0.330469) | |
| sme (0.305437) | |
| fat (0.294855) | |
| liv (0.292569) | |
| lin (0.291206) | |
| csk (0.281492) | |
| sug (0.254582) | |
| bla (0.248694) | |
| eru (0.240096) | |
| mgp (0.230681) | |
| hea (0.204499) | |
| col (0.195008) | |
| ton (0.1755) | |
| duo (0.172801) | |
| cki (0.165235) | |
| isp (0.150376) | |
| ski (0.146735) | |
| pty (0.142714) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| tra (0.123092) | |
| eep (0.122564) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| jca (0.11396) | |
| cty (0.10408) |