Ss1.1-Lng1-LNG010066C04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAGACCAGAAGACGAGCGTGTGCTGTGTGGAGGATGGGGTCTCTCATCGGAACACTAGA CTATGTCTGGCATATGGTGGATCTGATGTGTCAAGATGTTTTTACTGGCTGATGCAGCGA GCTGGGTTCCCTTACAGAGAATGCCAGTTAACAAATAAAATGGACTGCCTTCTTCTGCAA CACCTTAAAGAAACGTTTTGTCATTTAGATCAGGACATCTCTGGGCTTCAGGACCATGAG TTTCAGATTCGACATCCAGATTCCCCTGCCCTTCTTTACCAGTTTCGATTAGGAGATGAA AAACTCCAGGCTCCAATGGCTTTGTTTTACCCAGCAACTTTTGGAATCGTTGGACAGAAA ATGACAACTTTGCAGCACAGGTCCCAGGGTGACCCTGAGGATCCTCATGATGAGCACTAC CTGCTGGCCACACAAAGCAAGCAAGAACAGTCTGCAAAAGCTACTGCTGACCGAAAGTCT GCATCCAAACCCATTGGATTTGAAGGGGATCTTCGTGGCCAGTCCTCTGATCTTCCAGAA AGACTGCATTCCCAGGAGGTGGATTTGGGATCCTCCCAGGGAGACTGCTTGATGGCTGGC AATGACTCTGAGGAGGCTCTCACTGCACTCATGTCCAGGAAGACTGCCATCTCACTGTTT GAAGGGAAAGCCCTGGGCCTGGATAAAGCCATCCTCCATAGCATAGACTGTTGTTCATCT GATGATACCAAAAAGAAGATGTACAGCTCCATCCTGGTGGTGGGAGGTGGTTTGATGTTT CATAAAGCTCAAGAATTTCTGCAGCACAGAATTCTCAATAAAATGCCACCTTCATTCAGG CGAATTATTGAAAATGTGGATGTGATCACAAGGCCCAAGGACATGGATCCCCGGCTGATT GCATGGAAAGGAGGAGCAGTGTTGGCTTGTTTGGATACAACACAGGAACTGTGGATTTAT CAGAGAGAATGGCAGCGCTTTGGCGTCCGCATGCTACGAGAGCGAGCTGCTTTTGTGTGG TGACGTGGACAGAAAAGTCACTGCTGAAGAACAAAACATGCCTCGTGGTATACAAGACTC TTATCAAATGTTTGTACTCTAATTTATTGACCTGGGTGCTTAAGTTTCATGGAAATACAT GAATTTTAACTTTTATGTGGAGGACATGACGTTGGTGTAAAAAATAAGCTGCTTTTGTAG TCAGGACATCTGAGAATAAATATGAACTTATACTCCTGCCCCCACCTCAGGGTCTCAAAC TCCCAGTGATGTAAACTGTTGCCATAGACCAGTTTTCAAGCAGTGAAGCCCTTCATTTAG GTTGACTTCTGAGTGTCATCATGCATTCTCATGTCACTATGAGGGGTGGGTGTGTGACTA TACCAGAATTGTGAAAAACGTCTGGTCACACATTTTTCCTCACCTAGCATAGCAAGTGCA TATATGTTATGACTCAGGTATGCTGCTAGAATTCCAAATAGGAAAAAAAATTTCTTTTAG AAATCTGGAGTTCCCTTGTGGCTTAGCAGAAGTGAATCCGACTAGGAACCATGAGGTTAT GGGTTCAATCCCTGCCCTCACTCACTGGGTTAAGGATCTGGCATTGCCATGAGCTATGGT GTAGGTCTCAGATGTGGCTCCGATGTGGGGTTGCTATGGCTGGTTATGGTGTAGGCCAGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAGACCAGAAGACGAGCGTGTGCTGTGTGGAGGATGGGGTCTCTCATCGGAACACTAGA CTATGTCTGGCATATGGTGGATCTGATGTGTCAAGATGTTTTTACTGGCTGATGCAGCGA GCTGGGTTCCCTTACAGAGAATGCCAGTTAACAAATAAAATGGACTGCCTTCTTCTGCAA CACCTTAAAGAAACGTTTTGTCATTTAGATCAGGACATCTCTGGGCTTCAGGACCATGAG TTTCAGATTCGACATCCAGATTCCCCTGCCCTTCTTTACCAGTTTCGATTAGGAGATGAA AAACTCCAGGCTCCAATGGCTTTGTTTTACCCAGCAACTTTTGGAATCGTTGGACAGAAA ATGACAACTTTGCAGCACAGGTCCCAGGGTGACCCTGAGGATCCTCATGATGAGCACTAC CTGCTGGCCACACAAAGCAAGCAAGAACAGTCTGCAAAAGCTACTGCTGACCGAAAGTCT GCATCCAAACCCATTGGATTTGAAGGGGATCTTCGTGGCCAGTCCTCTGATCTTCCAGAA AGACTGCATTCCCAGGAGGTGGATTTGGGATCCTCCCAGGGAGACTGCTTGATGGCTGGC AATGACTCTGAGGAGGCTCTCACTGCACTCATGTCCAGGAAGACTGCCATCTCACTGTTT GAAGGGAAAGCCCTGGGCCTGGATAAAGCCATCCTCCATAGCATAGACTGTTGTTCATCT GATGATACCAAAAAGAAGATGTACAGCTCCATCCTGGTGGTGGGAGGTGGTTTGATGTTT CATAAAGCTCAAGAATTTCTGCAGCACAGAATTCTCAATAAAATGCCACCTTCATTCAGG CGAATTATTGAAAATGTGGATGTGATCACAAGGCCCAAGGACATGGATCCCCGGCTGATT GCATGGAAAGGAGGAGCAGTGTTGGCTTGTTTGGATACAACACAGGAACTGTGGATTTAT CAGAGAGAATGGCAGCGCTTTGGCGTCCGCATGCTACGAGAGCGAGCTGCTTTTGTGTGG TGACGTGGACAGAAAAGTCACTGCTGAAGAACAAAACATGCCTCGTGGTATACAAGACTC TTATCAAATGTTTGTACTCTAATTTATTGACCTGGGTGCTTAAGTTTCATGGAAATACAT GAATTTTAACTTTTATGTGGAGGACATGACGTTGGTGTAAAAAATAAGCTGCTTTTGTAG TCAGGACATCTGAGAATAAATATGAACTTATACTCCTGCCCCCACCTCAGGGTCTCAAAC TCCCAGTGATGTAAACTGTTGCCATAGACCAGTTTTCAAGCAGTGAAGCCCTTCATTTAG GTTGACTTCTGAGTGTCATCATGCATTCTCATGTCACTATGAGGGGTGGGTGTGTGACTA TACCAGAATTGTGAAAAACGTCTGGTCACACATTTTTCCTCACCTAGCATAGCAAGTGCA TATATGTTATGACTCAGGTATGCTGCTAGAATTCCAAATAGGAAAAAAAATTTCTTTTAG AAATCTGGAGTTCCCTTGTGGCTTAGCAGAAGTGAATCCGACTAGGAACCATGAGGTTAT GGGTTCAATCCCTGCCCTCACTCACTGGGTTAAGGATCTGGCATTGCCATGAGCTATGGT GTAGGTCTCAGATGTGGCTCCGATGTGGGGTTGCTATGGCTGGTTATGGTGTAGGCCAGC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 212-333, gnl|bosTau2|chr22 (35859333-35859455) | |
| 212-333, gnl|Hg17|chr3 (53882196-53882075) | |
| 212-333, gnl|Mm7|chr14 (27418663-27418784) | |
| 449-715, gnl|bosTau2|chr22 (35861133-35861399) | |
| 449-715, gnl|canFam2|chr20 (39127656-39127340) | |
| 449-715, gnl|danRer3|chr9 (22109213-22109515) | |
| 449-715, gnl|dasNov1|scaffold_10649 (20972-20659) | |
| 449-715, gnl|echTel1|scaffold_14540 (7837-8157) | |
| 449-715, gnl|fr1|chrUn (266413948-266414257) | |
| 449-715, gnl|galGal2|chr12 (7294710-7294998) | |
| 449-715, gnl|hg17|chr3 (53880295-53880613) | |
| 449-715, gnl|Hg17|chr3 (53880565-53880299) | |
| 449-715, gnl|loxAfr1|scaffold_20014 (4573-4894) | |
| 449-715, gnl|mm7|chr14 (27420686-27420396) | |
| 449-715, gnl|Mm7|chr14 (27420414-27420680) | |
| 449-715, gnl|monDom2|scaffold_76 (3894501-3894190) | |
| 449-715, gnl|oryCun1|scaffold_203207 (88894-88572) | |
| 449-715, gnl|panTro1|chr2 (55529035-55529353) | |
| 449-715, gnl|rheMac2|chr2 (82467455-82467137) | |
| 449-715, gnl|rn3|chr16 (5330462-5330155) | |
| 449-715, gnl|tetNig1|chr9 (948991-949305) | |
| 878-1497, gnl|bosTau2|chr22 (35862885-35863497) | |
| 878-1497, gnl|Hg17|chr3 (53877931-53877275) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 212-333, gnl|bosTau2|chr22 (35859333-35859455) | |
| 212-333, gnl|Hg17|chr3 (53882196-53882075) | |
| 212-333, gnl|Mm7|chr14 (27418663-27418784) | |
| 449-715, gnl|bosTau2|chr22 (35861133-35861399) | |
| 449-715, gnl|canFam2|chr20 (39127656-39127340) | |
| 449-715, gnl|danRer3|chr9 (22109213-22109515) | |
| 449-715, gnl|dasNov1|scaffold_10649 (20972-20659) | |
| 449-715, gnl|echTel1|scaffold_14540 (7837-8157) | |
| 449-715, gnl|fr1|chrUn (266413948-266414257) | |
| 449-715, gnl|galGal2|chr12 (7294710-7294998) | |
| 449-715, gnl|hg17|chr3 (53880295-53880613) | |
| 449-715, gnl|Hg17|chr3 (53880565-53880299) | |
| 449-715, gnl|loxAfr1|scaffold_20014 (4573-4894) | |
| 449-715, gnl|mm7|chr14 (27420686-27420396) | |
| 449-715, gnl|Mm7|chr14 (27420414-27420680) | |
| 449-715, gnl|monDom2|scaffold_76 (3894501-3894190) | |
| 449-715, gnl|oryCun1|scaffold_203207 (88894-88572) | |
| 449-715, gnl|panTro1|chr2 (55529035-55529353) | |
| 449-715, gnl|rheMac2|chr2 (82467455-82467137) | |
| 449-715, gnl|rn3|chr16 (5330462-5330155) | |
| 449-715, gnl|tetNig1|chr9 (948991-949305) | |
| 878-1497, gnl|bosTau2|chr22 (35862885-35863497) | |
| 878-1497, gnl|Hg17|chr3 (53877931-53877275) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| aor (0.390549) | |
| ldo (0.194005) | |
| lun (0.150489) | |
| csk (0.140746) | |
| cst (0.140036) | |
| pgl (0.118483) | |
| ebs (0.118301) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| aor (0.390549) | |
| ldo (0.194005) | |
| lun (0.150489) | |
| csk (0.140746) | |
| cst (0.140036) | |
| pgl (0.118483) | |
| ebs (0.118301) |