Ss1.1-Lng1-LNG010066F11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGGCACCCCGGTGATAATACTTCTGTAAGAACTTATATTTGCCCTTAACAGCTTTGTTG GTAATGACTTTGCCATTTGCCCGAAGCTCAGCTCGCCTCTCTTCCTCAGTCAGGTTTCGC ATGCGTTCAATTTCTGCTTTCTCCTTCTCAAGCGCTTCTCTATCTTCTCTGTCCCTCTTG ATTCTCTTTAGCTCCCGAACTTTCCATGCTTCATATTCCTCCTCATCATTTTCATCATCA GTATTGAGTGCATCTAGCGCAGCCAGGGACCGCTTGTTCTCCTCCAGCTCTTTCTTGGTC TCTTCTTCTACAATCTTGAGTGTATATTTGCGTCTCTCCTCAGCCATGCGTTTGGCCTCC TGCTCCAGCTCCTTCTGTTTCAATGCTTCGGCCTCCCGTTCTTGAACTGTTACTCGGTCC TTCTTCCGAATGAAGACTGGCTTAAGGCGAGGCTCCATCTCATCTTCACTGTCTGTGTAC TCTTCATACTCAGACTCTGATTCTGACTCCTCCCCAGAACGCCCCTCATCTTCCACCTCC ATGACTTCCATCTCTTCATTTTTTCTCTCCTGTGCTCGTTGACGCATCATGCCACGGCGT CGCTCTATTTCCTCATCATCAATCTCTTCTTCTTCTTCTTCACTGGTATCTTCTCGTTCC ATGCGCCAAGCATCTCCTTCTACTTCTGAGTCACTTTCTCCCACCACTTCGGGTTCCACT ATTTTCCGATGTCGAGCCAATCTCTCTTCCACATCTTCACTAATACGGTTCTGCAAACGT CGCAGCCGAGGGTCACTAGATGAATCCTCCTCTTGTTCCTCAGGCTCTGCTTCTTGTTCT TTGGCTTTCTTAATGAACTGAAATTCTTCATCCTCCTCATCTGAGGACTCCATAGGGGCA TAGTCTGGCCTCTTTCCTGACACATAACGTTTTACCTTCACTTTTTCCATCGAAATCTCG CCTTTCTCATTGCGAACCGGGACGGCCCCAGCCGTAGACTGAATAGGCGGTTGTTTCATG AGTGCGCTTGGGACCGACATTTTGATGGCAGCGGCGGTGATTCCAAAACTTGACTGATTC CAAACTGTGAACAGGTACAACGTCAACGAACAGAAAATCCTCCGCACCAGAGGCCACTGG ACACTGCTGCGTACTGATAGAAACACCACTTACGGCTGAGCTAGAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGGCACCCCGGTGATAATACTTCTGTAAGAACTTATATTTGCCCTTAACAGCTTTGTTG GTAATGACTTTGCCATTTGCCCGAAGCTCAGCTCGCCTCTCTTCCTCAGTCAGGTTTCGC ATGCGTTCAATTTCTGCTTTCTCCTTCTCAAGCGCTTCTCTATCTTCTCTGTCCCTCTTG ATTCTCTTTAGCTCCCGAACTTTCCATGCTTCATATTCCTCCTCATCATTTTCATCATCA GTATTGAGTGCATCTAGCGCAGCCAGGGACCGCTTGTTCTCCTCCAGCTCTTTCTTGGTC TCTTCTTCTACAATCTTGAGTGTATATTTGCGTCTCTCCTCAGCCATGCGTTTGGCCTCC TGCTCCAGCTCCTTCTGTTTCAATGCTTCGGCCTCCCGTTCTTGAACTGTTACTCGGTCC TTCTTCCGAATGAAGACTGGCTTAAGGCGAGGCTCCATCTCATCTTCACTGTCTGTGTAC TCTTCATACTCAGACTCTGATTCTGACTCCTCCCCAGAACGCCCCTCATCTTCCACCTCC ATGACTTCCATCTCTTCATTTTTTCTCTCCTGTGCTCGTTGACGCATCATGCCACGGCGT CGCTCTATTTCCTCATCATCAATCTCTTCTTCTTCTTCTTCACTGGTATCTTCTCGTTCC ATGCGCCAAGCATCTCCTTCTACTTCTGAGTCACTTTCTCCCACCACTTCGGGTTCCACT ATTTTCCGATGTCGAGCCAATCTCTCTTCCACATCTTCACTAATACGGTTCTGCAAACGT CGCAGCCGAGGGTCACTAGATGAATCCTCCTCTTGTTCCTCAGGCTCTGCTTCTTGTTCT TTGGCTTTCTTAATGAACTGAAATTCTTCATCCTCCTCATCTGAGGACTCCATAGGGGCA TAGTCTGGCCTCTTTCCTGACACATAACGTTTTACCTTCACTTTTTCCATCGAAATCTCG CCTTTCTCATTGCGAACCGGGACGGCCCCAGCCGTAGACTGAATAGGCGGTTGTTTCATG AGTGCGCTTGGGACCGACATTTTGATGGCAGCGGCGGTGATTCCAAAACTTGACTGATTC CAAACTGTGAACAGGTACAACGTCAACGAACAGAAAATCCTCCGCACCAGAGGCCACTGG ACACTGCTGCGTACTGATAGAAACACCACTTACGGCTGAGCTAGAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 423-541, - strand, RNAz p=0.976562 | |
| 821-940, + strand, RNAz p=0.731676 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 423-541, - strand, RNAz p=0.976562 | |
| 821-940, + strand, RNAz p=0.731676 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-286, gnl|bosTau2|chr18 (10571695-10571413) | |
| 1-286, gnl|Hg17|chr15 (41889252-41892609) | |
| 1-286, gnl|Mm7|chr4 (110667275-110666990) | |
| 423-618, gnl|bosTau2|chr21 (34536124-34536318) | |
| 423-618, gnl|Hg17|chr15 (41893990-41894184) | |
| 423-618, gnl|Mm7|chr2 (121210627-121210814) | |
| 742-963, gnl|bosTau2|chr21 (34537825-34538046) | |
| 742-963, gnl|canFam2|chr30 (13546670-13546887) | |
| 742-963, gnl|danRer3|chr11 (29490626-29490899) | |
| 742-963, gnl|dasNov1|scaffold_16689 (20425-20642) | |
| 742-963, gnl|echTel1|scaffold_157959 (2496-2709) | |
| 742-963, gnl|hg17|chr13 (30014731-30014956) | |
| 742-963, gnl|Hg17|chr15 (41896719-41896940) | |
| 742-963, gnl|loxAfr1|scaffold_15289 (52672-52455) | |
| 742-963, gnl|Mm7|chr2 (121210946-121211167) | |
| 742-963, gnl|mm7|chr4 (47467751-47467531) | |
| 742-963, gnl|monDom2|scaffold_7 (62375053-62375273) | |
| 742-963, gnl|oryCun1|scaffold_167311 (13100-13317) | |
| 742-963, gnl|panTro1|chr14 (29218480-29218705) | |
| 742-963, gnl|rheMac2|chr17 (9984725-9984946) | |
| 742-963, gnl|rn3|chr10 (55406892-55407112) | |
| 742-963, gnl|tetNig1|chrUn_random (6842386-6842662) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-286, gnl|bosTau2|chr18 (10571695-10571413) | |
| 1-286, gnl|Hg17|chr15 (41889252-41892609) | |
| 1-286, gnl|Mm7|chr4 (110667275-110666990) | |
| 423-618, gnl|bosTau2|chr21 (34536124-34536318) | |
| 423-618, gnl|Hg17|chr15 (41893990-41894184) | |
| 423-618, gnl|Mm7|chr2 (121210627-121210814) | |
| 742-963, gnl|bosTau2|chr21 (34537825-34538046) | |
| 742-963, gnl|canFam2|chr30 (13546670-13546887) | |
| 742-963, gnl|danRer3|chr11 (29490626-29490899) | |
| 742-963, gnl|dasNov1|scaffold_16689 (20425-20642) | |
| 742-963, gnl|echTel1|scaffold_157959 (2496-2709) | |
| 742-963, gnl|hg17|chr13 (30014731-30014956) | |
| 742-963, gnl|Hg17|chr15 (41896719-41896940) | |
| 742-963, gnl|loxAfr1|scaffold_15289 (52672-52455) | |
| 742-963, gnl|Mm7|chr2 (121210946-121211167) | |
| 742-963, gnl|mm7|chr4 (47467751-47467531) | |
| 742-963, gnl|monDom2|scaffold_7 (62375053-62375273) | |
| 742-963, gnl|oryCun1|scaffold_167311 (13100-13317) | |
| 742-963, gnl|panTro1|chr14 (29218480-29218705) | |
| 742-963, gnl|rheMac2|chr17 (9984725-9984946) | |
| 742-963, gnl|rn3|chr10 (55406892-55407112) | |
| 742-963, gnl|tetNig1|chrUn_random (6842386-6842662) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| cbr (0.639877) | |
| elu (0.385356) | |
| cbl (0.344392) | |
| nlu (0.191681) | |
| spl (0.143184) | |
| csk (0.140746) | |
| ste (0.135208) | |
| bla (0.124347) | |
| jca (0.11396) | |
| eje (0.0988338) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbr (0.639877) | |
| elu (0.385356) | |
| cbl (0.344392) | |
| nlu (0.191681) | |
| spl (0.143184) | |
| csk (0.140746) | |
| ste (0.135208) | |
| bla (0.124347) | |
| jca (0.11396) | |
| eje (0.0988338) |