Non-Coding RNA Search

Ss1.1-Lng1-LNG010066H10.5

Sequence:


               
               GAAGGTGGAGGACAAGAAGAAGGAGCTGGAGGAGGAGGTGAACAGTTTCCAGAAGAAGAA
GGCGGCAGCTCAGTTGCTCCAGTCCCAGGCCCAGCAGTCTGGGGCCCAGCAGACCAAGAA
AGACAAGGACAAGAAAAAGTAAGCAGGTGCCACCCCCGCACAGGGGGCCCTCTAATAGTT
TCTCCCTCTTGCATGTCTCTACTTTTCCCCTTTACAGACTGGAAACTGGTCTGTTACCTG
AAAGATGAGAGCAAGTATTTTTCTCTTCCGTGCAGGGAAGACGATAGAGTTTTTAAAGTA
TTTCTAAAGGGTACACAAACAGTAATTTATAAAACTTGCCCACACGGTCTAGCCATCAGG
ACCAGGGTGACCTATCGTCTCCAGTAGCATCTTCTGCACCAATCCTAGGACTCGCGAGAA
GACAGTGTATTTATTTCTCTTCTCTACTTTCTGCAGACAATCCTCATGGGCTCCTGATAA
AGAGCATCCTAAGATTAGGACTGCTAGAATTATTTTTCTATTCTCTGTTGTAAGGCCTGA
GACGCCAGTCATTGAAAGTGTCGTCCCCCGAATGCCAGATTTGCAAGAACTGCTAGTGGC
CACTAGGTTTCCTCTAAATTCAGTGACACGATAAATTATTTTATTGTGACATTGGGATCA
ACATGTGCATCCAGTTAAGACACCTTCACCAACTCTCCAGACCCAGCTATAGCCACACAA
AAGCATTTTCAAAGATGGCCTTGATTTAAGGTGCCCAGGGGTCAGAGTCTGCTCTTGAGT
TGTCGCTTCCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGGTGGAGGACAAGAAGAAGGAGCTGGAGGAGGAGGTGAACAGTTTCCAGAAGAAGAA
GGCGGCAGCTCAGTTGCTCCAGTCCCAGGCCCAGCAGTCTGGGGCCCAGCAGACCAAGAA
AGACAAGGACAAGAAAAAGTAAGCAGGTGCCACCCCCGCACAGGGGGCCCTCTAATAGTT
TCTCCCTCTTGCATGTCTCTACTTTTCCCCTTTACAGACTGGAAACTGGTCTGTTACCTG
AAAGATGAGAGCAAGTATTTTTCTCTTCCGTGCAGGGAAGACGATAGAGTTTTTAAAGTA
TTTCTAAAGGGTACACAAACAGTAATTTATAAAACTTGCCCACACGGTCTAGCCATCAGG
ACCAGGGTGACCTATCGTCTCCAGTAGCATCTTCTGCACCAATCCTAGGACTCGCGAGAA
GACAGTGTATTTATTTCTCTTCTCTACTTTCTGCAGACAATCCTCATGGGCTCCTGATAA
AGAGCATCCTAAGATTAGGACTGCTAGAATTATTTTTCTATTCTCTGTTGTAAGGCCTGA
GACGCCAGTCATTGAAAGTGTCGTCCCCCGAATGCCAGATTTGCAAGAACTGCTAGTGGC
CACTAGGTTTCCTCTAAATTCAGTGACACGATAAATTATTTTATTGTGACATTGGGATCA
ACATGTGCATCCAGTTAAGACACCTTCACCAACTCTCCAGACCCAGCTATAGCCACACAA
AAGCATTTTCAAAGATGGCCTTGATTTAAGGTGCCCAGGGGTCAGAGTCTGCTCTTGAGT
TGTCGCTTCCTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-119, + strand, RNAz p=0.931702

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, + strand, RNAz p=0.931702

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-792, gnl|bosTau2|chr6 (48220202-48220991)
               

               
               1-792, gnl|Hg17|chr4 (78309165-78309952)
               

               
               1-792, gnl|Mm7|chr5 (93154801-93155534)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-792, gnl|bosTau2|chr6 (48220202-48220991)
               

               
               1-792, gnl|Hg17|chr4 (78309165-78309952)
               

               
               1-792, gnl|Mm7|chr5 (93154801-93155534)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               mas (0.210305)
               

               
               jca (0.11396)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               jca (0.11396)

	1-792, gnl\|bosTau2\|chr6 (48220202-48220991)
	1-792, gnl\|Hg17\|chr4 (78309165-78309952)
	1-792, gnl\|Mm7\|chr5 (93154801-93155534)