Non-Coding RNA Search

Ss1.1-Lng1-LNG010067A05.5

Sequence:


               
               CTTCTCCCCACTTCTACCCTGACTTCTCCCGCCTCCGAGAGTCCTTTGGGGACCCCAAGG
AGAGAGTCAGGTGGAGGACCAAACAGAACCTTGATTACTGCTTCCTCATGATGTATGCAC
AGTCCAAAGGCATCTACTACGTGCAGCTGGAGGATGACATCGTAGCCAAGCCCAACTACC
TGAGCACCATGAAGAACTTCGCCCTCCAACAGCCCTCAGAGGATTGGATGATCCTGGAGT
TCTCCCAGCTGGGTTTCATTGGGAAGATGTTCAAGTCCCTAGACCTAAGCCTCATTGTGG
AGTTCATCCTCATGTTCTACCGGGACAAGCCCATCGACTGGCTCCTAGACCATATTCTGT
GGGTGAAAGTCTGCAACCCTGAGAAGGATGCGAAGCACTGTGACCGGCAGAAGGCCAACC
TGCGGATCCGCTTCAAGCCATCCCTCTTCCAGCATGTGGGCACTCACTCCTCGCTGGCGG
GCAAGATCCAGAAACTGAAGGACAAGGACTTTGGGAAGCATGCACTACGGAAGGAGCACG
TGAACCCACCCGCTGAAGTGAGCACGAGCCTCAAGACATACCAGCACTTCACCCTGGAGA
AGGCCTACCTACGCGAGGATTTCTTCTGGGCCTTCACGCCAGCTGCGGGGGACTTCATCC
GCTTCCGCTTCTTCCAGCCACTGCGACTGGAGCGGTTCTTCTTCCGCAGTGGGAACATTG
AGCACCCAGAGGACAAGCTCTTCAACACGTCTGTGGAGGTGCTGCCTTTTGATAACCCGC
AGTCAGACAAGGAGGCCCTGCAAGAGGGCCGCTCAGCCACTCTCCGGTACCCTCGGAGCC
CTGATGGCTACCTCCAGATCGGCACCTTCTACAAAGGTGTGGCACAGGGAGAAGTGGATC
CTGCCTTTGGCCCACTGGAAGCACTGCGCCTCTCCATCCAGACAGACTCGCCCGTGTGGG
TCATTCTGAGTGAGATCTTCCTGAAAAAGGCCGACTAAGCCGAGGGCTTCTGAGGGTGGA
CTTCCGCTGGCCCTGGAGCCCGTGAGACCTAGGATGTCGTCGCTGCAGCCCCTGGAGGGC
CAGGCGCCGCCACCCCAGCCTGAGGGGCTCTGCCTGGCGCCCCGCTCTGCCAGCCTGGGG
TGGCCGCTGGCCCGGAGGCCCCAGGAGCTGGTGCTGCCCTGCCCGCCAGGCCGCGGGAAG
AGGCAGGCGGCCCCCACACTGTGCCTGAGGCCGGCCCGCGCCGCCCAGAACCCTCGCTCC
CTGGCCCGCTTGAGCCAGGCCATTTTAGAAGAGCTTTTTCCTGGGCGCCCGCTGTCTCCG
GCGCGAACACTGGAATGCATAATACTACTTTATGTGCTGTGTTTTTTATTCTTGGATACA
TTTGATTTTTTCACCTTAAGTCCACATATACTTCTATAAGAGCGTTACTTGTAATAAAGG
GTTAATGAAGAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCTCCCCACTTCTACCCTGACTTCTCCCGCCTCCGAGAGTCCTTTGGGGACCCCAAGG
AGAGAGTCAGGTGGAGGACCAAACAGAACCTTGATTACTGCTTCCTCATGATGTATGCAC
AGTCCAAAGGCATCTACTACGTGCAGCTGGAGGATGACATCGTAGCCAAGCCCAACTACC
TGAGCACCATGAAGAACTTCGCCCTCCAACAGCCCTCAGAGGATTGGATGATCCTGGAGT
TCTCCCAGCTGGGTTTCATTGGGAAGATGTTCAAGTCCCTAGACCTAAGCCTCATTGTGG
AGTTCATCCTCATGTTCTACCGGGACAAGCCCATCGACTGGCTCCTAGACCATATTCTGT
GGGTGAAAGTCTGCAACCCTGAGAAGGATGCGAAGCACTGTGACCGGCAGAAGGCCAACC
TGCGGATCCGCTTCAAGCCATCCCTCTTCCAGCATGTGGGCACTCACTCCTCGCTGGCGG
GCAAGATCCAGAAACTGAAGGACAAGGACTTTGGGAAGCATGCACTACGGAAGGAGCACG
TGAACCCACCCGCTGAAGTGAGCACGAGCCTCAAGACATACCAGCACTTCACCCTGGAGA
AGGCCTACCTACGCGAGGATTTCTTCTGGGCCTTCACGCCAGCTGCGGGGGACTTCATCC
GCTTCCGCTTCTTCCAGCCACTGCGACTGGAGCGGTTCTTCTTCCGCAGTGGGAACATTG
AGCACCCAGAGGACAAGCTCTTCAACACGTCTGTGGAGGTGCTGCCTTTTGATAACCCGC
AGTCAGACAAGGAGGCCCTGCAAGAGGGCCGCTCAGCCACTCTCCGGTACCCTCGGAGCC
CTGATGGCTACCTCCAGATCGGCACCTTCTACAAAGGTGTGGCACAGGGAGAAGTGGATC
CTGCCTTTGGCCCACTGGAAGCACTGCGCCTCTCCATCCAGACAGACTCGCCCGTGTGGG
TCATTCTGAGTGAGATCTTCCTGAAAAAGGCCGACTAAGCCGAGGGCTTCTGAGGGTGGA
CTTCCGCTGGCCCTGGAGCCCGTGAGACCTAGGATGTCGTCGCTGCAGCCCCTGGAGGGC
CAGGCGCCGCCACCCCAGCCTGAGGGGCTCTGCCTGGCGCCCCGCTCTGCCAGCCTGGGG
TGGCCGCTGGCCCGGAGGCCCCAGGAGCTGGTGCTGCCCTGCCCGCCAGGCCGCGGGAAG
AGGCAGGCGGCCCCCACACTGTGCCTGAGGCCGGCCCGCGCCGCCCAGAACCCTCGCTCC
CTGGCCCGCTTGAGCCAGGCCATTTTAGAAGAGCTTTTTCCTGGGCGCCCGCTGTCTCCG
GCGCGAACACTGGAATGCATAATACTACTTTATGTGCTGTGTTTTTTATTCTTGGATACA
TTTGATTTTTTCACCTTAAGTCCACATATACTTCTATAAGAGCGTTACTTGTAATAAAGG
GTTAATGAAGAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|21595296|gb|AAH31613.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|21595296|gb|AAH31613.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               589-748, - strand, RNAz p=0.964767

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               589-748, - strand, RNAz p=0.964767

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               145-267, gnl|bosTau2|chr11 (3944743-3944865)
               

               
               145-267, gnl|Hg17|chr2 (98720525-98720403)
               

               
               145-267, gnl|Mm7|chr1 (37698087-37697965)
               


               
               312-756, gnl|bosTau2|chr10 (62392773-62393193)
               


               
               911-1188, gnl|bosTau2|chr10 (62393288-62393550)
               

               
               911-1188, gnl|Hg17|chr5 (179157834-179157463)
               

               
               911-1188, gnl|Mm7|chr11 (50191216-50191612)
               


               
               1207-1457, gnl|bosTau2|chr10 (62393538-62393786)
               

               
               1207-1457, gnl|Hg17|chr5 (179157475-179157216)
               

               
               1207-1457, gnl|Mm7|chr11 (50191569-50191874)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               145-267, gnl|bosTau2|chr11 (3944743-3944865)
               

               
               145-267, gnl|Hg17|chr2 (98720525-98720403)
               

               
               145-267, gnl|Mm7|chr1 (37698087-37697965)
               


               
               312-756, gnl|bosTau2|chr10 (62392773-62393193)
               


               
               911-1188, gnl|bosTau2|chr10 (62393288-62393550)
               

               
               911-1188, gnl|Hg17|chr5 (179157834-179157463)
               

               
               911-1188, gnl|Mm7|chr11 (50191216-50191612)
               


               
               1207-1457, gnl|bosTau2|chr10 (62393538-62393786)
               

               
               1207-1457, gnl|Hg17|chr5 (179157475-179157216)
               

               
               1207-1457, gnl|Mm7|chr11 (50191569-50191874)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               elu (0.385356)
               

               
               ebs (0.354904)
               

               
               pla (0.267344)
               

               
               jca (0.22792)
               

               
               ill (0.175593)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               pty (0.142714)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               med (0.116252)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               ebs (0.354904)
               

               
               pla (0.267344)
               

               
               jca (0.22792)
               

               
               ill (0.175593)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               pty (0.142714)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               med (0.116252)

	145-267, gnl\|bosTau2\|chr11 (3944743-3944865)
	145-267, gnl\|Hg17\|chr2 (98720525-98720403)
	145-267, gnl\|Mm7\|chr1 (37698087-37697965)

	312-756, gnl\|bosTau2\|chr10 (62392773-62393193)

	911-1188, gnl\|bosTau2\|chr10 (62393288-62393550)
	911-1188, gnl\|Hg17\|chr5 (179157834-179157463)
	911-1188, gnl\|Mm7\|chr11 (50191216-50191612)

	1207-1457, gnl\|bosTau2\|chr10 (62393538-62393786)
	1207-1457, gnl\|Hg17\|chr5 (179157475-179157216)
	1207-1457, gnl\|Mm7\|chr11 (50191569-50191874)

	elu (0.385356)
	ebs (0.354904)
	pla (0.267344)
	jca (0.22792)
	ill (0.175593)
	fhi (0.169578)
	nco (0.161734)
	eli (0.151814)
	pty (0.142714)
	cov (0.132153)
	ese (0.126502)
	med (0.116252)