Non-Coding RNA Search

Ss1.1-Lng1-LNG010067C01.5

Sequence:


               
               CGTGCTCCCAGCCGGTGGGCTTGGATTGGGTGAGCCTCTGTGGTCCCGCCCCGGGACCTA
GAAGTTCCCACTGGATGGGGGAGAGCTCCGAGGGCTCCCGGTCTGGACCGCACTTCTTGG
TGTCCTCATCTGTTAAGATAAGCCCTGTGCCCACCTAGGGGCGGCTGTGAGGATGGAGGT
GACGTGAGTGTGTACAGCACACAGCGGGCACTGCCTTCTACTGCTAGCAGAAAACGCTGC
ACAGGTAACTAGCAGAGAGTGCTGTGCTTCTATGAGGAAGCGGCCCCCAGCAAAGCTGTA
ACGATGTCCGACAAGAACCAGGTCGCTGCCAAAGCTGCCCTTATCGAGCAGCTGATGTCT
AAGAGGAATTTTGAGGATCTCGGCAACCACCTCACCGAGCTGGAAACTCTGCGTGTGACC
AAGGAGCTTCTCCAGGAAACAGTCGTGGTCCGGGCTGTGTACAGAGTCCTCAAACACTGC
CCTACGGCGGCTCTGAAAAAGAAAGCCAAGTGTTTGCTGTCAAAATGGAAAGCTCTGTAT
AAGGACGCTCAGGTCAAGGCCAAGGGCAGCCCTAAGCTCTCCCCTGCGGGCAGACAGAAG
GAAGAACATCAAAGACTTTCTCCCAACCCAAGTCAGGATGCAGCGCGGGGCAGCTCCAGT
TCTCATTCTCCGCAGCCATCCCAAGATGTTGCTGGAGCCCCTGAAATGAACATGCCAGAA
AATAGCCCCGGTGCAGGGGAGCCTGAGGCAGCGCATCTCAGGGCTGGTGACCCTAAATCC
ACCGACCAGAGCTCGGGCGAGCTGCGGGATCCCACGCGGCCCGTGCGAGCCAAGTGCACA
GAGCTGCTGTACGAAGCTCTAGCTGCTTTTTCCACCGAGCAGCCTCGAGCCGATTTGTGG
CACCGGTTTGCACAAGAAATCGAAGAGTGCATTTTTACCCTTCACGCCAAGAACCTCAAA
AAATATAAAACTTGTATCCGAAGCAAAATTGCCAATCTCAAGAATCCCCGCAATTCTCAC
TTACGAGAAAACTTGCTCTCCGGGATCATGTCTCCAAGGGCATTTGCCGAAATGACCGTC
ATGGACATGGCAAGCAAGGAACTGAAGCAGTTGAGAGCCTCCTACACGGAGTCCTGCATT
CAGGAACATTCCCTTCCCCAGGGGGTGGAGGGCACTCCGACCAAGAAGGTGAGATGCCGG
CGCTGCGAGAAATTCAATTGCCAGGTCACCGTAATCGCCAGAGGGGCCCTCTTCCTTCCA
AGCTGGGTGCGGAATGCAAAGCCGGATGAAGAGTTGATGACCTACGTCATCTGCAAGGAA
TGTGGGGAGCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTGCTCCCAGCCGGTGGGCTTGGATTGGGTGAGCCTCTGTGGTCCCGCCCCGGGACCTA
GAAGTTCCCACTGGATGGGGGAGAGCTCCGAGGGCTCCCGGTCTGGACCGCACTTCTTGG
TGTCCTCATCTGTTAAGATAAGCCCTGTGCCCACCTAGGGGCGGCTGTGAGGATGGAGGT
GACGTGAGTGTGTACAGCACACAGCGGGCACTGCCTTCTACTGCTAGCAGAAAACGCTGC
ACAGGTAACTAGCAGAGAGTGCTGTGCTTCTATGAGGAAGCGGCCCCCAGCAAAGCTGTA
ACGATGTCCGACAAGAACCAGGTCGCTGCCAAAGCTGCCCTTATCGAGCAGCTGATGTCT
AAGAGGAATTTTGAGGATCTCGGCAACCACCTCACCGAGCTGGAAACTCTGCGTGTGACC
AAGGAGCTTCTCCAGGAAACAGTCGTGGTCCGGGCTGTGTACAGAGTCCTCAAACACTGC
CCTACGGCGGCTCTGAAAAAGAAAGCCAAGTGTTTGCTGTCAAAATGGAAAGCTCTGTAT
AAGGACGCTCAGGTCAAGGCCAAGGGCAGCCCTAAGCTCTCCCCTGCGGGCAGACAGAAG
GAAGAACATCAAAGACTTTCTCCCAACCCAAGTCAGGATGCAGCGCGGGGCAGCTCCAGT
TCTCATTCTCCGCAGCCATCCCAAGATGTTGCTGGAGCCCCTGAAATGAACATGCCAGAA
AATAGCCCCGGTGCAGGGGAGCCTGAGGCAGCGCATCTCAGGGCTGGTGACCCTAAATCC
ACCGACCAGAGCTCGGGCGAGCTGCGGGATCCCACGCGGCCCGTGCGAGCCAAGTGCACA
GAGCTGCTGTACGAAGCTCTAGCTGCTTTTTCCACCGAGCAGCCTCGAGCCGATTTGTGG
CACCGGTTTGCACAAGAAATCGAAGAGTGCATTTTTACCCTTCACGCCAAGAACCTCAAA
AAATATAAAACTTGTATCCGAAGCAAAATTGCCAATCTCAAGAATCCCCGCAATTCTCAC
TTACGAGAAAACTTGCTCTCCGGGATCATGTCTCCAAGGGCATTTGCCGAAATGACCGTC
ATGGACATGGCAAGCAAGGAACTGAAGCAGTTGAGAGCCTCCTACACGGAGTCCTGCATT
CAGGAACATTCCCTTCCCCAGGGGGTGGAGGGCACTCCGACCAAGAAGGTGAGATGCCGG
CGCTGCGAGAAATTCAATTGCCAGGTCACCGTAATCGCCAGAGGGGCCCTCTTCCTTCCA
AGCTGGGTGCGGAATGCAAAGCCGGATGAAGAGTTGATGACCTACGTCATCTGCAAGGAA
TGTGGGGAGCAG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|57111627|ref|XP_537955.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57111627|ref|XP_537955.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               829-948, - strand, RNAz p=0.566171

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               829-948, - strand, RNAz p=0.566171

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               294-1332, gnl|bosTau2|chrX (41783399-41784440)
               

               
               294-1332, gnl|Hg17|chrX (13440275-13441310)
               

               
               294-1332, gnl|Mm7|chrX (161277769-161276710)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               294-1332, gnl|bosTau2|chrX (41783399-41784440)
               

               
               294-1332, gnl|Hg17|chrX (13440275-13441310)
               

               
               294-1332, gnl|Mm7|chrX (161277769-161276710)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               sug (0.127291)
               

               
               jej (0.0989218)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               sug (0.127291)
               

               
               jej (0.0989218)

	294-1332, gnl\|bosTau2\|chrX (41783399-41784440)
	294-1332, gnl\|Hg17\|chrX (13440275-13441310)
	294-1332, gnl\|Mm7\|chrX (161277769-161276710)

	hyp (0.142837)
	nca (0.136874)
	ute (0.132784)
	sug (0.127291)
	jej (0.0989218)