Non-Coding RNA Search

Ss1.1-Lng1-LNG010068H07.5

Sequence:


               
               GCCCGCTCCGCCCGCCGCGCTGAGCCGAGCCGAGTGGAGCGGCCCGGGCTGGGCGCGACC
CCGGCCAGCGGCGACGCAGAAAGCCGGCGGAGGCGCGGGCCATGATGCGGCTAGCGCTCG
CCGGGGCCAGAGCCATCGTGGACATGTCCTACGCCCGCCACTTCCTGGACTTCCAGGGTT
CGGCCATCCCACGCGCCATGCAGAAGCTAGTGGTGACCCGGCTGAGCCCCAACTTCCGCG
AGGCCGTCACCTTGCGCCGCGACTGCCCGGTGCCACTCCCCGGGGACGGAGACCTCCTCG
TCCGGAACCGATTTGTTGGTATTAATGCATCTGACATCAACTATTCAGCTGGCCGATATG
ACCCTTCAGTCAAGATCCCCTTTGACGTGGGTTTCGAAGGTGTTGGAGAGGTGGTGGCCT
TAGGCCTCTCGGCCAGCGCCAAATACTCAGTTGGCCAAGCTGTGGCTTACATGGCACCTG
GCTCTTTTGCCGAGTACACAGTGGTGCCTGCCAGGATGGCCATTCCAGTGCCGTCTGTGA
AACCCGAGTATCTCACCCTCCTGGTAAGTGGTACCACTGCCTACATCAGCCTGAAAGAGC
TGGGAGGACTGTCAGAAGGGAGAAAAGTTCTGGTGACGGCAGCAGCTGGGGGGACTGGCC
AATTTGCCGTCCAGCTGGCAAAGAAGGCCAAGTGCCACGTGATCGGAACTTGCTCTTCGG
ATGAAAAGGCTGCTTTTCTGAAATCCCTTGGCTGTGATCGTCCCATCAACTATAATGCTG
AGCAGGTGGGCGCCATCCTCCAGCAGGAGTACCCCCGAGGTGTGGATGTGGTGTACGAAT
CCGTCGGGGGAGCCATGTTTGACGTGGCTGTAAAGGCTCTGGCTATCAAAGGGCGCTTGA
TAGTGATCGGCTTCCTCTCCGGCTACCAGACTCCTACTGGCCTTTTACCTGTGAAAGCGG
AAACGTTGCCAGCCACATTGCTGAAGAAATCTGCCAGCATCCAGGGCTTCTTCTTGAACC
ATTACCTTCCTGAGTATCAAGCCGCCATGGACCACTTGCTTAAGATGTACTCGGGTGGAG
AGCTGGTTTGTGAGGTTGATCTCGGACACCTGTCTGCAGAGGGCAGGTTTATCGGCCTGG
AGTCTGTATTCCGGGCTGTCGATTACATGTACACGAGAAAAAACACTGGAAAAATTGTAG
TCGAATTACCTCACTCTGTCAACAGTAAGCTGTAAAAACAGAACACTGGCATAAATAAAA
GGAGAAAAAAATGGGCATTTTATGCCCCAGACTTACTCAAATCTATTTTTAGTTGGTAAT
GGAGATGGTATTTCTTAAAACAAAAGTAAGGTTTAGGAATTGGTTTCTCCTTCTCTTTTC
TTTACTTCCTCTATTTATTTAAATTTTTTTGCTCCTCCCTTGCCAAAAAATAAATAAATA
AAATTTCTTTCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCGCTCCGCCCGCCGCGCTGAGCCGAGCCGAGTGGAGCGGCCCGGGCTGGGCGCGACC
CCGGCCAGCGGCGACGCAGAAAGCCGGCGGAGGCGCGGGCCATGATGCGGCTAGCGCTCG
CCGGGGCCAGAGCCATCGTGGACATGTCCTACGCCCGCCACTTCCTGGACTTCCAGGGTT
CGGCCATCCCACGCGCCATGCAGAAGCTAGTGGTGACCCGGCTGAGCCCCAACTTCCGCG
AGGCCGTCACCTTGCGCCGCGACTGCCCGGTGCCACTCCCCGGGGACGGAGACCTCCTCG
TCCGGAACCGATTTGTTGGTATTAATGCATCTGACATCAACTATTCAGCTGGCCGATATG
ACCCTTCAGTCAAGATCCCCTTTGACGTGGGTTTCGAAGGTGTTGGAGAGGTGGTGGCCT
TAGGCCTCTCGGCCAGCGCCAAATACTCAGTTGGCCAAGCTGTGGCTTACATGGCACCTG
GCTCTTTTGCCGAGTACACAGTGGTGCCTGCCAGGATGGCCATTCCAGTGCCGTCTGTGA
AACCCGAGTATCTCACCCTCCTGGTAAGTGGTACCACTGCCTACATCAGCCTGAAAGAGC
TGGGAGGACTGTCAGAAGGGAGAAAAGTTCTGGTGACGGCAGCAGCTGGGGGGACTGGCC
AATTTGCCGTCCAGCTGGCAAAGAAGGCCAAGTGCCACGTGATCGGAACTTGCTCTTCGG
ATGAAAAGGCTGCTTTTCTGAAATCCCTTGGCTGTGATCGTCCCATCAACTATAATGCTG
AGCAGGTGGGCGCCATCCTCCAGCAGGAGTACCCCCGAGGTGTGGATGTGGTGTACGAAT
CCGTCGGGGGAGCCATGTTTGACGTGGCTGTAAAGGCTCTGGCTATCAAAGGGCGCTTGA
TAGTGATCGGCTTCCTCTCCGGCTACCAGACTCCTACTGGCCTTTTACCTGTGAAAGCGG
AAACGTTGCCAGCCACATTGCTGAAGAAATCTGCCAGCATCCAGGGCTTCTTCTTGAACC
ATTACCTTCCTGAGTATCAAGCCGCCATGGACCACTTGCTTAAGATGTACTCGGGTGGAG
AGCTGGTTTGTGAGGTTGATCTCGGACACCTGTCTGCAGAGGGCAGGTTTATCGGCCTGG
AGTCTGTATTCCGGGCTGTCGATTACATGTACACGAGAAAAAACACTGGAAAAATTGTAG
TCGAATTACCTCACTCTGTCAACAGTAAGCTGTAAAAACAGAACACTGGCATAAATAAAA
GGAGAAAAAAATGGGCATTTTATGCCCCAGACTTACTCAAATCTATTTTTAGTTGGTAAT
GGAGATGGTATTTCTTAAAACAAAAGTAAGGTTTAGGAATTGGTTTCTCCTTCTCTTTTC
TTTACTTCCTCTATTTATTTAAATTTTTTTGCTCCTCCCTTGCCAAAAAATAAATAAATA
AAATTTCTTTCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61847935|ref|XP_611033.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61847935|ref|XP_611033.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               310-428, - strand, RNAz p=0.890376
               

               
               469-588, - strand, RNAz p=0.891033
               

               
               1109-1228, + strand, RNAz p=0.966184

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               310-428, - strand, RNAz p=0.890376
               

               
               469-588, - strand, RNAz p=0.891033
               

               
               1109-1228, + strand, RNAz p=0.966184

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               310-1447, gnl|bosTau2|chr24 (3621889-3623015)
               

               
               310-1447, gnl|Hg17|chr18 (71043284-71042157)
               

               
               310-1447, gnl|Mm7|chr18 (84443542-84444615)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               310-1447, gnl|bosTau2|chr24 (3621889-3623015)
               

               
               310-1447, gnl|Hg17|chr18 (71043284-71042157)
               

               
               310-1447, gnl|Mm7|chr18 (84443542-84444615)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               hlv (0.417769)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.417769)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	310-428, - strand, RNAz p=0.890376
	469-588, - strand, RNAz p=0.891033
	1109-1228, + strand, RNAz p=0.966184

	310-1447, gnl\|bosTau2\|chr24 (3621889-3623015)
	310-1447, gnl\|Hg17\|chr18 (71043284-71042157)
	310-1447, gnl\|Mm7\|chr18 (84443542-84444615)

	hlv (0.417769)
	fty (0.17584)
	ton (0.1755)
	eye (0.170503)
	nje (0.16592)
	cki (0.165235)
	nco (0.161734)
	lnt (0.142308)
	ssp (0.13552)
	ste (0.135208)
	cov (0.132153)
	ese (0.126502)
	eru (0.120048)
	cty (0.10408)
	jej (0.0989218)
	eje (0.0988338)