Non-Coding RNA Search

Ss1.1-Lng1-LNG010068H10.5

Sequence:


               
               GGCGAAGACCCTTATTACACGGAGAACGGTGGAGGCCAGGGCTATAGCTCAGGCCCTGGG
GCCTCCCCTGAGGCTCAGGGAAAAGCCAGTGTGACTCGAGGGGCTCAGGAGAACGGCACC
GGCCAGGCCACCTCCAGAAACGGCCATTCGGCGAGACAACCCATGGTGGCAGATACTGAA
CTGTGACTGGGCTGGGTGGGGCGAGGCTGGGGAAGGAGCCCTCCCAGCCTCTGAACGTGT
GCTGCCTCTCTTCCCTGCTCCCCTTTCCCGCTGCACACTCCCGTGGAGGCCATCCCTGGG
ACCCTGCACTGATCTCGGGGAGAGGCAGGCCACCCTGCCCTTTACACACGCGGCTCCTTG
CACCCAGCCTCTGAGCTGCTCAGAGTTGGGGGGGATGGGGAAGCCCATGTGCAAAGCAAC
TCCTGGGGAGTTGATGGCCTCGCAGCGTTCACACGGGGGCTCCCTGCCCTCCTCTCTGCC
TCACTGCAGGAACTCCCAGGGGAAAGCGCGGGCTTTTCTGAGCTGTAATTTCCTCCCAGG
AGGCTTTGCCTTCTACCGTCTTTGTTCCTTATTTTTCTTTCTCTACTTTAGGGAAACCAA
AGCAACCCCTGCACCTGCTCCTTTGTAATGATATAGCCAGGAAACCTTGTGTTAAACCAT
CTCCCTCATCTTCCCTCTGAGTCACTGTGGATTCGGTCACCAGCCCCCCTTTTGCTTTCC
ACGTTCCCAGAGCTGCACAGGTTCCCCCGCATCTGTGGACAGAGGCCTGCACAGATCTCT
GGCAGAGGCTGGAACTGGACTCCCAGTTTGAGAGCGATGCCCAGTGTCTGTGTGTTTGGG
GGACAGGGTAGGCACACATGGACATGCGTGTTCCCACTCATGGGGCAGGTGGGTGAGGGC
ACACAGCTCGGTCTCTGCAGGGAGCCTCTGCTTGGGCTGCTCTTTCTCCCTGTGGTTCCG
AGGGGGCTGGACGGTGGCAGCAGATCTCCAAGCCATGCCTCTTGACTGTGCCCTGAGGCT
AGGGTCCTGGCCTCATCCTCTGCCTCAGTGGCTTTCTCCCTCCTCTCCCTGACTCCTGGG
TCGGGCCATGGCCTCAGTTTCCCAGCAGATTCCATTCTGTCTCTGCCTCTGCCACTCTGA
CCCCGCTCACGGCTCTGCACCCCACGCGGTCAGGGCCCCAGGACATCTCCAGAGGACCCC
CTCTGAAAGCCACCTTCTCTGTAGGTGACCCAGGTCCTTGTTTTTTGTTTCTGTGTTTTT
GTTTTTGTTTTTTTTTTTGGGAGGGGTGACCCAAGAATCCTGACGATTGGAAATAGAACT
TTCCAGAGATAAAAAGATGGGTGAATTTTTTTTTCTGAATAAAGAAGGGGGTGTGTAAAT
ACTGTAATTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGAAGACCCTTATTACACGGAGAACGGTGGAGGCCAGGGCTATAGCTCAGGCCCTGGG
GCCTCCCCTGAGGCTCAGGGAAAAGCCAGTGTGACTCGAGGGGCTCAGGAGAACGGCACC
GGCCAGGCCACCTCCAGAAACGGCCATTCGGCGAGACAACCCATGGTGGCAGATACTGAA
CTGTGACTGGGCTGGGTGGGGCGAGGCTGGGGAAGGAGCCCTCCCAGCCTCTGAACGTGT
GCTGCCTCTCTTCCCTGCTCCCCTTTCCCGCTGCACACTCCCGTGGAGGCCATCCCTGGG
ACCCTGCACTGATCTCGGGGAGAGGCAGGCCACCCTGCCCTTTACACACGCGGCTCCTTG
CACCCAGCCTCTGAGCTGCTCAGAGTTGGGGGGGATGGGGAAGCCCATGTGCAAAGCAAC
TCCTGGGGAGTTGATGGCCTCGCAGCGTTCACACGGGGGCTCCCTGCCCTCCTCTCTGCC
TCACTGCAGGAACTCCCAGGGGAAAGCGCGGGCTTTTCTGAGCTGTAATTTCCTCCCAGG
AGGCTTTGCCTTCTACCGTCTTTGTTCCTTATTTTTCTTTCTCTACTTTAGGGAAACCAA
AGCAACCCCTGCACCTGCTCCTTTGTAATGATATAGCCAGGAAACCTTGTGTTAAACCAT
CTCCCTCATCTTCCCTCTGAGTCACTGTGGATTCGGTCACCAGCCCCCCTTTTGCTTTCC
ACGTTCCCAGAGCTGCACAGGTTCCCCCGCATCTGTGGACAGAGGCCTGCACAGATCTCT
GGCAGAGGCTGGAACTGGACTCCCAGTTTGAGAGCGATGCCCAGTGTCTGTGTGTTTGGG
GGACAGGGTAGGCACACATGGACATGCGTGTTCCCACTCATGGGGCAGGTGGGTGAGGGC
ACACAGCTCGGTCTCTGCAGGGAGCCTCTGCTTGGGCTGCTCTTTCTCCCTGTGGTTCCG
AGGGGGCTGGACGGTGGCAGCAGATCTCCAAGCCATGCCTCTTGACTGTGCCCTGAGGCT
AGGGTCCTGGCCTCATCCTCTGCCTCAGTGGCTTTCTCCCTCCTCTCCCTGACTCCTGGG
TCGGGCCATGGCCTCAGTTTCCCAGCAGATTCCATTCTGTCTCTGCCTCTGCCACTCTGA
CCCCGCTCACGGCTCTGCACCCCACGCGGTCAGGGCCCCAGGACATCTCCAGAGGACCCC
CTCTGAAAGCCACCTTCTCTGTAGGTGACCCAGGTCCTTGTTTTTTGTTTCTGTGTTTTT
GTTTTTGTTTTTTTTTTTGGGAGGGGTGACCCAAGAATCCTGACGATTGGAAATAGAACT
TTCCAGAGATAAAAAGATGGGTGAATTTTTTTTTCTGAATAAAGAAGGGGGTGTGTAAAT
ACTGTAATTAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|2137790|pir||I69199

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|2137790|pir||I69199

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               744-899, - strand, RNAz p=0.822289
               

               
               1006-1119, + strand, RNAz p=0.998908

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               744-899, - strand, RNAz p=0.822289
               

               
               1006-1119, + strand, RNAz p=0.998908

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

Help | Less info


               
               1-428, gnl|bosTau2|chr16 (55264956-55264500)
               

               
               1-428, gnl|canFam2|chr7 (9690453-9690991)
               

               
               1-428, gnl|echTel1|scaffold_252750 (10082-9605)
               

               
               1-428, gnl|hg17|chr1 (204449106-204449607)
               

               
               1-428, gnl|Hg17|chr1 (204449663-204449211)
               

               
               1-428, gnl|loxAfr1|scaffold_89717 (5794-6284)
               

               
               1-428, gnl|mm7|chr1 (194514752-194514290)
               

               
               1-428, gnl|Mm7|chr1 (194514232-194514628)
               

               
               1-428, gnl|monDom2|scaffold_13 (10081326-10081923)
               

               
               1-428, gnl|oryCun1|scaffold_149718 (8372-8816)
               

               
               1-428, gnl|panTro1|chr1 (188052246-188052747)
               

               
               1-428, gnl|rheMac2|chr1 (162491100-162490598)
               

               
               1-428, gnl|rn3|chr13 (111088362-111087899)
               


               
               744-1119, gnl|bosTau2|chr16 (55264308-55263894)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-428, gnl|bosTau2|chr16 (55264956-55264500)
               

               
               1-428, gnl|canFam2|chr7 (9690453-9690991)
               

               
               1-428, gnl|echTel1|scaffold_252750 (10082-9605)
               

               
               1-428, gnl|hg17|chr1 (204449106-204449607)
               

               
               1-428, gnl|Hg17|chr1 (204449663-204449211)
               

               
               1-428, gnl|loxAfr1|scaffold_89717 (5794-6284)
               

               
               1-428, gnl|mm7|chr1 (194514752-194514290)
               

               
               1-428, gnl|Mm7|chr1 (194514232-194514628)
               

               
               1-428, gnl|monDom2|scaffold_13 (10081326-10081923)
               

               
               1-428, gnl|oryCun1|scaffold_149718 (8372-8816)
               

               
               1-428, gnl|panTro1|chr1 (188052246-188052747)
               

               
               1-428, gnl|rheMac2|chr1 (162491100-162490598)
               

               
               1-428, gnl|rn3|chr13 (111088362-111087899)
               


               
               744-1119, gnl|bosTau2|chr16 (55264308-55263894)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               cga (0.837287)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               che (0.136314)
               

               
               cov (0.132153)
               

               
               cly (0.120642)
               

               
               jca (0.11396)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.837287)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               che (0.136314)
               

               
               cov (0.132153)
               

               
               cly (0.120642)
               

               
               jca (0.11396)

	744-899, - strand, RNAz p=0.822289
	1006-1119, + strand, RNAz p=0.998908

	1-428, gnl\|bosTau2\|chr16 (55264956-55264500)
	1-428, gnl\|canFam2\|chr7 (9690453-9690991)
	1-428, gnl\|echTel1\|scaffold_252750 (10082-9605)
	1-428, gnl\|hg17\|chr1 (204449106-204449607)
	1-428, gnl\|Hg17\|chr1 (204449663-204449211)
	1-428, gnl\|loxAfr1\|scaffold_89717 (5794-6284)
	1-428, gnl\|mm7\|chr1 (194514752-194514290)
	1-428, gnl\|Mm7\|chr1 (194514232-194514628)
	1-428, gnl\|monDom2\|scaffold_13 (10081326-10081923)
	1-428, gnl\|oryCun1\|scaffold_149718 (8372-8816)
	1-428, gnl\|panTro1\|chr1 (188052246-188052747)
	1-428, gnl\|rheMac2\|chr1 (162491100-162490598)
	1-428, gnl\|rn3\|chr13 (111088362-111087899)

	744-1119, gnl\|bosTau2\|chr16 (55264308-55263894)

	cga (0.837287)
	mcp (0.170648)
	nje (0.16592)
	che (0.136314)
	cov (0.132153)
	cly (0.120642)
	jca (0.11396)