Non-Coding RNA Search

Ss1.1-Lng1-LNG010069A11.5

Sequence:


               
               AGCAATCCTGGAGAGTCATGGGATAGATGTACAGAGTCCAGGAGGCCATTCCAACAGTGA
TGACGTCGACGGAAATGACTACTCAGAGCAGGATACTTGGCAAGTACGCAATGGGGAGGA
GGAGGAGGGAAGTGACGTCGACGGAAATGACTACTCAGAGCAGGATGACAGCACTAGCCA
TAGTGACCACCAGGACCCCATCTCATTAGCTGTGGAAATGGCAGCAGTCAACCACACTAT
CTTGGCATTGGCCCGACAAGGAGCCAACGAAATCAAGACAGAGGCTCTGGATGACGACTG
ATCAGAGAGGGTGAACACGAGAAGTTAACTTAGTTTAGACGTAGCACCTTAGCAGACTTT
CCTCGGTCCTTAACATGTGTTCTTACAGTATAACTTGCAGTTTCTTGTATGTCAGTTAGC
CGTTAGGGTCTTGTTCTGTGAAGATGGCATGGTGCCCTCAGCCTTTGCATATACTCTCAG
TATTAATTCCAGTAAATAATAACCAACCAACCAACCAAACTTCCCTCTCCCAGCCCCTGA
GGCTAGAAAAATCTTGCTGCTCTGTCTTAGCATTCCAGGAAAGTGCTTCCAGGTATTTAG
ATAGCCCTCAGTTTTCAAATATTAGGCTACGTGTAAAACCTTGGGTACCTTTAGATTCCT
GTAACACTAGTTTGTACCCCTTTTCCTTCCCCAAGACTGGTAGGATGCAAGCTGAGGTAG
TGTGGCCCAGGATTGACAGACACCATTTGGGGAGTATCCGCAGAGTAAAAGGAACACTAG
AATCCCTCCTCAGCGTGGGAGTAATTGATTTCCAGCTGCAATAAGCCGTGCCTCATAATA
GTCACACTGTGGCTAGATTATACTTCTTTGGGTGCTGTGCTAAGAATGTCAGTGGAAAAA
CTCGATCTCAGATTTTGGTTGATGTTAACATGCCTGACACAGACATCCTTTCCTCTCACA
AGCTGTGTGACTTAGATAAAATACTGCCTTCTCCTTTGGGACCATGATTAAAACAAACAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCAATCCTGGAGAGTCATGGGATAGATGTACAGAGTCCAGGAGGCCATTCCAACAGTGA
TGACGTCGACGGAAATGACTACTCAGAGCAGGATACTTGGCAAGTACGCAATGGGGAGGA
GGAGGAGGGAAGTGACGTCGACGGAAATGACTACTCAGAGCAGGATGACAGCACTAGCCA
TAGTGACCACCAGGACCCCATCTCATTAGCTGTGGAAATGGCAGCAGTCAACCACACTAT
CTTGGCATTGGCCCGACAAGGAGCCAACGAAATCAAGACAGAGGCTCTGGATGACGACTG
ATCAGAGAGGGTGAACACGAGAAGTTAACTTAGTTTAGACGTAGCACCTTAGCAGACTTT
CCTCGGTCCTTAACATGTGTTCTTACAGTATAACTTGCAGTTTCTTGTATGTCAGTTAGC
CGTTAGGGTCTTGTTCTGTGAAGATGGCATGGTGCCCTCAGCCTTTGCATATACTCTCAG
TATTAATTCCAGTAAATAATAACCAACCAACCAACCAAACTTCCCTCTCCCAGCCCCTGA
GGCTAGAAAAATCTTGCTGCTCTGTCTTAGCATTCCAGGAAAGTGCTTCCAGGTATTTAG
ATAGCCCTCAGTTTTCAAATATTAGGCTACGTGTAAAACCTTGGGTACCTTTAGATTCCT
GTAACACTAGTTTGTACCCCTTTTCCTTCCCCAAGACTGGTAGGATGCAAGCTGAGGTAG
TGTGGCCCAGGATTGACAGACACCATTTGGGGAGTATCCGCAGAGTAAAAGGAACACTAG
AATCCCTCCTCAGCGTGGGAGTAATTGATTTCCAGCTGCAATAAGCCGTGCCTCATAATA
GTCACACTGTGGCTAGATTATACTTCTTTGGGTGCTGTGCTAAGAATGTCAGTGGAAAAA
CTCGATCTCAGATTTTGGTTGATGTTAACATGCCTGACACAGACATCCTTTCCTCTCACA
AGCTGTGTGACTTAGATAAAATACTGCCTTCTCCTTTGGGACCATGATTAAAACAAACAG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61880233|ref|XP_584836.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61880233|ref|XP_584836.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               162-280, - strand, RNAz p=0.750545

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               162-280, - strand, RNAz p=0.750545

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               162-1012, gnl|bosTau2|chr18 (6135737-6136591)
               

               
               162-1012, gnl|Hg17|chr8 (28964452-28965308)
               

               
               162-1012, gnl|Mm7|chr14 (59685022-59684172)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               162-1012, gnl|bosTau2|chr18 (6135737-6136591)
               

               
               162-1012, gnl|Hg17|chr8 (28964452-28965308)
               

               
               162-1012, gnl|Mm7|chr14 (59685022-59684172)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               spl (0.143184)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)

	162-1012, gnl\|bosTau2\|chr18 (6135737-6136591)
	162-1012, gnl\|Hg17\|chr8 (28964452-28965308)
	162-1012, gnl\|Mm7\|chr14 (59685022-59684172)