Non-Coding RNA Search

Ss1.1-Lng1-LNG010069H09.5

Sequence:


               
               TGTCACCCAAGCCAGAGGCGCACCGGCCCCCTGGGTTTTTCCTCCTTGGGCTCTGCTTCT
CTTTCCTCTTCCTCTTCTCCCTCCTCTTTCTCCCTCCGCACTCGTCTGTCTCTCTCCCTC
CCTCCCCTCTGGTCCTACCAGTTGGCTCTCCGCTCCTCTCCCACCCACTTTCTCCCTCCT
CCTCGGCCTTGCGCAGCCCCGGCCCAGCAGCTGCAGTTCCCTCAAAAGCCTTCAGAGGGC
GCGGCCGCTCCACTCGCTGGCCGTGCTGCTGCGGCGCGCGCTTCCTGTGAGGTCAGGTGG
GAGGAAGCGGCTTGGGAGCCACCGGGAGTGGACGCAGCCGAGCCCTGGGAGCCGTGCTCG
CAGGCGTTTTGCTGTCTGAGGAAAGGCGCAGCCCACCAGGGACCCATAGCTCCTGGAAGG
ATGGTTCGCATCTTGGCCAATGGGGAAATTGTGCAGGACGACGACCCCCGTGTGAGGAAC
ACAGCCCAACCACGCAGTAGCACCCCTCGACAGAGCTTTCTCAATAGGGGCCACGGTGCC
CCCCTGGGGGGTCCCAGCCCTCGCCAGCAGCAGGCAGGTGCCAGGCTAGGTGCTGCTCAG
TCCCCCTTCAATGATCTCAACCGGCAGCTGGTGAACATGGGCTTCCCCCAGTGGCATCTG
GGCAACCACGCCGTGGAGCCGGTGACCTCCATCCTGCTCCTCTTCCTGCTCATGATGCTC
GGCGTGCGTGGACTCCTGCTGGTGGGCCTCGTCTACCTGGTGTCCCACCTGAGTCAGCGG
TGACCTCCGGGGGCTGCCGGGGCAGGTGTGTGGGAGAGGGAGCTGCTGGGCCTTGGTGTG
AGACAGCACATGTGGGGAGGGGCTCCCGGGGTGCCTGGAAGGTGTGCTCAGAGTGTCCGT
TTTTGCGTTGTGTTAAGCATGCGGCCGAGGAAGCCTGTAGTCCGACATTCCCAAAGGACC
GGATGCTCCTTCATCCCCTGAGATGTGTTTAGGTTGTACGGGGTGTTAAGCACAAAGTCA
GAGCGAGAAAGGGATTCCCTGTCCAATTCTCTTCCAGTCCTTTTATGCCAGGGAGAAAGG
CTCCACTAGATGCCAAAATGTTCTCATGCCTCTGGAACACGGGCTGGCGTCCCCATCCCT
TGGGAGCAGGCCTGGGCTGAGGGCAGGTGGGGAAAGTTGCCAGACTTTTATAGCTCCGTT
TTGTTTTAATGGTATATTTTTATTGGCTACCTTTTATTTATGACAAGTGGTACCGGCATT
CTACTTACCGTGGTGGCGTTTTCAATAAAGACATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTCACCCAAGCCAGAGGCGCACCGGCCCCCTGGGTTTTTCCTCCTTGGGCTCTGCTTCT
CTTTCCTCTTCCTCTTCTCCCTCCTCTTTCTCCCTCCGCACTCGTCTGTCTCTCTCCCTC
CCTCCCCTCTGGTCCTACCAGTTGGCTCTCCGCTCCTCTCCCACCCACTTTCTCCCTCCT
CCTCGGCCTTGCGCAGCCCCGGCCCAGCAGCTGCAGTTCCCTCAAAAGCCTTCAGAGGGC
GCGGCCGCTCCACTCGCTGGCCGTGCTGCTGCGGCGCGCGCTTCCTGTGAGGTCAGGTGG
GAGGAAGCGGCTTGGGAGCCACCGGGAGTGGACGCAGCCGAGCCCTGGGAGCCGTGCTCG
CAGGCGTTTTGCTGTCTGAGGAAAGGCGCAGCCCACCAGGGACCCATAGCTCCTGGAAGG
ATGGTTCGCATCTTGGCCAATGGGGAAATTGTGCAGGACGACGACCCCCGTGTGAGGAAC
ACAGCCCAACCACGCAGTAGCACCCCTCGACAGAGCTTTCTCAATAGGGGCCACGGTGCC
CCCCTGGGGGGTCCCAGCCCTCGCCAGCAGCAGGCAGGTGCCAGGCTAGGTGCTGCTCAG
TCCCCCTTCAATGATCTCAACCGGCAGCTGGTGAACATGGGCTTCCCCCAGTGGCATCTG
GGCAACCACGCCGTGGAGCCGGTGACCTCCATCCTGCTCCTCTTCCTGCTCATGATGCTC
GGCGTGCGTGGACTCCTGCTGGTGGGCCTCGTCTACCTGGTGTCCCACCTGAGTCAGCGG
TGACCTCCGGGGGCTGCCGGGGCAGGTGTGTGGGAGAGGGAGCTGCTGGGCCTTGGTGTG
AGACAGCACATGTGGGGAGGGGCTCCCGGGGTGCCTGGAAGGTGTGCTCAGAGTGTCCGT
TTTTGCGTTGTGTTAAGCATGCGGCCGAGGAAGCCTGTAGTCCGACATTCCCAAAGGACC
GGATGCTCCTTCATCCCCTGAGATGTGTTTAGGTTGTACGGGGTGTTAAGCACAAAGTCA
GAGCGAGAAAGGGATTCCCTGTCCAATTCTCTTCCAGTCCTTTTATGCCAGGGAGAAAGG
CTCCACTAGATGCCAAAATGTTCTCATGCCTCTGGAACACGGGCTGGCGTCCCCATCCCT
TGGGAGCAGGCCTGGGCTGAGGGCAGGTGGGGAAAGTTGCCAGACTTTTATAGCTCCGTT
TTGTTTTAATGGTATATTTTTATTGGCTACCTTTTATTTATGACAAGTGGTACCGGCATT
CTACTTACCGTGGTGGCGTTTTCAATAAAGACATTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q96D05_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q96D05_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               226-344, + strand, RNAz p=0.797875

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               226-344, + strand, RNAz p=0.797875

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               62-364, gnl|bosTau2|chr28 (19936017-19935711)
               

               
               62-364, gnl|Hg17|chr10 (71059746-71060076)
               

               
               62-364, gnl|Mm7|chr10 (61629981-61629696)
               


               
               505-1296, gnl|bosTau2|chr28 (19933677-19932885)
               

               
               505-1296, gnl|Hg17|chr10 (71062544-71063349)
               

               
               505-1296, gnl|Mm7|chr10 (61627869-61627151)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               62-364, gnl|bosTau2|chr28 (19936017-19935711)
               

               
               62-364, gnl|Hg17|chr10 (71059746-71060076)
               

               
               62-364, gnl|Mm7|chr10 (61629981-61629696)
               


               
               505-1296, gnl|bosTau2|chr28 (19933677-19932885)
               

               
               505-1296, gnl|Hg17|chr10 (71062544-71063349)
               

               
               505-1296, gnl|Mm7|chr10 (61627869-61627151)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ebs (0.236602)
               

               
               fhi (0.169578)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.236602)
               

               
               fhi (0.169578)

	62-364, gnl\|bosTau2\|chr28 (19936017-19935711)
	62-364, gnl\|Hg17\|chr10 (71059746-71060076)
	62-364, gnl\|Mm7\|chr10 (61629981-61629696)

	505-1296, gnl\|bosTau2\|chr28 (19933677-19932885)
	505-1296, gnl\|Hg17\|chr10 (71062544-71063349)
	505-1296, gnl\|Mm7\|chr10 (61627869-61627151)