Non-Coding RNA Search

Ss1.1-Lng1-LNG010069H12.5

Sequence:


               
               TCCCCATAGCTGTCTTGTGGCTTCACCTGAGAAAAATCACCTGTTATCCCATCCCTCCAG
CTCTGGAGTTTGCAAAAGGAGCCTGGCCCCGTTAGCTCGGAAGCTGTGTCCACTCTCTGA
AATGGGCTCCCGAGACCTAATGCAAGGGCTTTGCTGGGAGGTCAGACAGAGAAACCTGCC
CTTTAAAACACTTCAGGAAGATGCTACTAAGGCTACTGGCAAGCGTATAATTGTGGATCA
CCAAACTATGACAAATAAGCCACACAGGCATTTCCAGCTTGGATTAGTGGGAGGAAAGAC
TCATCAAACAGAATTCTTCACCACCTTTGTCAGCAACTGAGTTGCTTCTGGGGAAGGCAG
TGTTTCCTTTTTCACAACCCTCCCCCCCCCAAAAAAAATATTGTACCACAGCTTGGAAAC
CGTGGGGAAGAAAACATGCACTCAGACGTGCAGGCTCCCTCAAAGCTGGAGAGGCCAGGC
TGCATGTGGGCTCTGCAGAAGCCTCCTGAGCCTCGTCCTGAGGGCTTAGACAGTCGGTCC
AGGGCCTTAGCTTGAGGCTCAGAGATGAGGGCTGCCACCCAGAGCCTCGATAGCCATGGG
GAGGCAGGGAGCCATGGGAATAAGACCCCAAGTGCCATCCCTCCCGCTCGGGACTTTATT
AGAAAAGAGCAAGAAGAGTCACTCTCATCCTATTGCTTAAGAAGGGACCCGAACACCCTC
TTGCACTGGACCGCAGTTGGAACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCCATAGCTGTCTTGTGGCTTCACCTGAGAAAAATCACCTGTTATCCCATCCCTCCAG
CTCTGGAGTTTGCAAAAGGAGCCTGGCCCCGTTAGCTCGGAAGCTGTGTCCACTCTCTGA
AATGGGCTCCCGAGACCTAATGCAAGGGCTTTGCTGGGAGGTCAGACAGAGAAACCTGCC
CTTTAAAACACTTCAGGAAGATGCTACTAAGGCTACTGGCAAGCGTATAATTGTGGATCA
CCAAACTATGACAAATAAGCCACACAGGCATTTCCAGCTTGGATTAGTGGGAGGAAAGAC
TCATCAAACAGAATTCTTCACCACCTTTGTCAGCAACTGAGTTGCTTCTGGGGAAGGCAG
TGTTTCCTTTTTCACAACCCTCCCCCCCCCAAAAAAAATATTGTACCACAGCTTGGAAAC
CGTGGGGAAGAAAACATGCACTCAGACGTGCAGGCTCCCTCAAAGCTGGAGAGGCCAGGC
TGCATGTGGGCTCTGCAGAAGCCTCCTGAGCCTCGTCCTGAGGGCTTAGACAGTCGGTCC
AGGGCCTTAGCTTGAGGCTCAGAGATGAGGGCTGCCACCCAGAGCCTCGATAGCCATGGG
GAGGCAGGGAGCCATGGGAATAAGACCCCAAGTGCCATCCCTCCCGCTCGGGACTTTATT
AGAAAAGAGCAAGAAGAGTCACTCTCATCCTATTGCTTAAGAAGGGACCCGAACACCCTC
TTGCACTGGACCGCAGTTGGAACA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               345-486, - strand, RNAz p=0.796048

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               345-486, - strand, RNAz p=0.796048

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-732, gnl|bosTau2|chr11 (11187490-11186773)
               

               
               1-732, gnl|Hg17|chr2 (72316881-72316161)
               

               
               1-732, gnl|Mm7|chr6 (84649634-84648968)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-732, gnl|bosTau2|chr11 (11187490-11186773)
               

               
               1-732, gnl|Hg17|chr2 (72316881-72316161)
               

               
               1-732, gnl|Mm7|chr6 (84649634-84648968)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nlu (0.191681)
               

               
               nep (0.183925)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               nep (0.183925)

	1-732, gnl\|bosTau2\|chr11 (11187490-11186773)
	1-732, gnl\|Hg17\|chr2 (72316881-72316161)
	1-732, gnl\|Mm7\|chr6 (84649634-84648968)