Ss1.1-Lng1-LNG010070F08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGGGAGGAGCCGAGGGGTTTCAGAACGAGCTCCGCCGCTGGGTGGGTCGGGGCGTTCCG CGCGCCCTTCACTGAAGCGGCGGTGGCCGGGCTGGGCACTGGGAGTGGGAAGCGACGGCG CGGCTGGAAAATGCCAGTCCATTCTCGAGGGGATAAGAAGGAGACGAACCATCACGATGA GATGGAGGTGGACTACGCCGAAAACGAGGGGAGCAGCTCTGAGGACGAGGACACCGAGAG CTCGTCGGTCTCTGAGGATGGAGATAGCTCAGAAATGGATGATGAAGACTGTGAAAGAAG AAGAATGGAATGTTTAGATGAAATGTCCAATCTAGAAAAACAGTTTACCGATCTCAAGGA TCAACTTTATAAAGAACGATTAAGTCAGGTGGATGCAAAACTACAAGAAGTCATAGCTGG AAAAGCACCAGAATATTTGGAACCACTGGCAACTTTACAAGAAAATATAATGATGAGCTT AAAGGTAGCAGGAATCTATAGAGAGCTCTGCTTAGAATCTGTAAAGAACAAATATGAATG TGAAATTCAAGCTTCTCGCCAGCATTGTGAGAGTGAAAAGCTTTTGTTGTATGATACAGT GCAGAGTGAACTGGAGGAGAAGATAAGAAGACTTGAAGAGGACAGGCACAGCATTGATAT ACTCTGAGTTCACAAATCTTCTCTGTGGAGACTTGTTAAATCATCTACACACTAAAGAGC TCCTCCTTCAGTGGTTTCATTTTTTCAGTGGACACTGCACCCAGGATTATGAAGAATCCT TCTGGAGTCTTTGCCTCATGTAAAAGTTTCAAGATTTCTAAGTGGAATCTATTTCTTCTT TCAGTATTTTAGCTACATTACAATTGCCAAGGATGGATCAATAATTTAAAAAATGTTTAC TGTTTTTATGGGCTTAGTAATTGCAGAGGGGGAGGTTTGGAGTCTGTGGTTGACCTTCAG GGAGCCTGTGCATCTTCTGGAATTGTGGGCAGAATTTCTTCTGTGCTTGTGTTTTCTAGG TGAGAGATTAGCATGCTGGCAGTGGGATTCATCAAGAAAATTCATACACTACTAAGATTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGGGAGGAGCCGAGGGGTTTCAGAACGAGCTCCGCCGCTGGGTGGGTCGGGGCGTTCCG CGCGCCCTTCACTGAAGCGGCGGTGGCCGGGCTGGGCACTGGGAGTGGGAAGCGACGGCG CGGCTGGAAAATGCCAGTCCATTCTCGAGGGGATAAGAAGGAGACGAACCATCACGATGA GATGGAGGTGGACTACGCCGAAAACGAGGGGAGCAGCTCTGAGGACGAGGACACCGAGAG CTCGTCGGTCTCTGAGGATGGAGATAGCTCAGAAATGGATGATGAAGACTGTGAAAGAAG AAGAATGGAATGTTTAGATGAAATGTCCAATCTAGAAAAACAGTTTACCGATCTCAAGGA TCAACTTTATAAAGAACGATTAAGTCAGGTGGATGCAAAACTACAAGAAGTCATAGCTGG AAAAGCACCAGAATATTTGGAACCACTGGCAACTTTACAAGAAAATATAATGATGAGCTT AAAGGTAGCAGGAATCTATAGAGAGCTCTGCTTAGAATCTGTAAAGAACAAATATGAATG TGAAATTCAAGCTTCTCGCCAGCATTGTGAGAGTGAAAAGCTTTTGTTGTATGATACAGT GCAGAGTGAACTGGAGGAGAAGATAAGAAGACTTGAAGAGGACAGGCACAGCATTGATAT ACTCTGAGTTCACAAATCTTCTCTGTGGAGACTTGTTAAATCATCTACACACTAAAGAGC TCCTCCTTCAGTGGTTTCATTTTTTCAGTGGACACTGCACCCAGGATTATGAAGAATCCT TCTGGAGTCTTTGCCTCATGTAAAAGTTTCAAGATTTCTAAGTGGAATCTATTTCTTCTT TCAGTATTTTAGCTACATTACAATTGCCAAGGATGGATCAATAATTTAAAAAATGTTTAC TGTTTTTATGGGCTTAGTAATTGCAGAGGGGGAGGTTTGGAGTCTGTGGTTGACCTTCAG GGAGCCTGTGCATCTTCTGGAATTGTGGGCAGAATTTCTTCTGTGCTTGTGTTTTCTAGG TGAGAGATTAGCATGCTGGCAGTGGGATTCATCAAGAAAATTCATACACTACTAAGATTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 153-272, + strand, RNAz p=0.810229 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 153-272, + strand, RNAz p=0.810229 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 1-272, gnl|bosTau2|chr21 (30543828-30544099) | |
| 1-272, gnl|Hg17|chr14 (35365347-35365615) | |
| 1-272, gnl|Mm7|chr12 (53761959-53762229) | |
| 364-492, gnl|bosTau2|chr21 (30551659-30551787) | |
| 364-492, gnl|canFam2|chr8 (17499046-17499190) | |
| 364-492, gnl|danRer3|chr17 (6657798-6657935) | |
| 364-492, gnl|dasNov1|scaffold_91978 (7681-7797) | |
| 364-492, gnl|echTel1|scaffold_293139 (27706-27562) | |
| 364-492, gnl|fr1|chrUn (158003291-158003152) | |
| 364-492, gnl|galGal2|chr5 (33231310-33231454) | |
| 364-492, gnl|hg17|chr14 (35371927-35372071) | |
| 364-492, gnl|Hg17|chr14 (35371935-35372063) | |
| 364-492, gnl|loxAfr1|scaffold_42190 (11124-10980) | |
| 364-492, gnl|mm7|chr12 (53769972-53770113) | |
| 364-492, gnl|Mm7|chr12 (53769980-53770108) | |
| 364-492, gnl|monDom2|scaffold_73 (2289139-2288995) | |
| 364-492, gnl|oryCun1|scaffold_173292 (85121-85265) | |
| 364-492, gnl|panTro1|chr15_random (6650516-6650372) | |
| 364-492, gnl|rheMac2|chr7 (98794494-98794638) | |
| 364-492, gnl|rn3|chr6 (76190152-76190296) | |
| 364-492, gnl|tetNig1|chr10 (2430907-2431044) | |
| 364-492, gnl|xenTro1|scaffold_117 (1955278-1955134) | |
| 663-973, gnl|bosTau2|chr21 (30580124-30580431) | |
| 663-973, gnl|Hg17|chr14 (35404732-35405054) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-272, gnl|bosTau2|chr21 (30543828-30544099) | |
| 1-272, gnl|Hg17|chr14 (35365347-35365615) | |
| 1-272, gnl|Mm7|chr12 (53761959-53762229) | |
| 364-492, gnl|bosTau2|chr21 (30551659-30551787) | |
| 364-492, gnl|canFam2|chr8 (17499046-17499190) | |
| 364-492, gnl|danRer3|chr17 (6657798-6657935) | |
| 364-492, gnl|dasNov1|scaffold_91978 (7681-7797) | |
| 364-492, gnl|echTel1|scaffold_293139 (27706-27562) | |
| 364-492, gnl|fr1|chrUn (158003291-158003152) | |
| 364-492, gnl|galGal2|chr5 (33231310-33231454) | |
| 364-492, gnl|hg17|chr14 (35371927-35372071) | |
| 364-492, gnl|Hg17|chr14 (35371935-35372063) | |
| 364-492, gnl|loxAfr1|scaffold_42190 (11124-10980) | |
| 364-492, gnl|mm7|chr12 (53769972-53770113) | |
| 364-492, gnl|Mm7|chr12 (53769980-53770108) | |
| 364-492, gnl|monDom2|scaffold_73 (2289139-2288995) | |
| 364-492, gnl|oryCun1|scaffold_173292 (85121-85265) | |
| 364-492, gnl|panTro1|chr15_random (6650516-6650372) | |
| 364-492, gnl|rheMac2|chr7 (98794494-98794638) | |
| 364-492, gnl|rn3|chr6 (76190152-76190296) | |
| 364-492, gnl|tetNig1|chr10 (2430907-2431044) | |
| 364-492, gnl|xenTro1|scaffold_117 (1955278-1955134) | |
| 663-973, gnl|bosTau2|chr21 (30580124-30580431) | |
| 663-973, gnl|Hg17|chr14 (35404732-35405054) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hyp (0.142837) | |
| eru (0.120048) |