Ss1.1-Lng1-LNG010071B02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGCAGCCGGCAGCCTAGCCGGTAGCTCGCTCGGCCCCGCTCGGCCTGGCCCGCAGGTAG GAGCCGCCGAGGGACGCGGCCCCGGCTGCCCGGCCCTCCCTGCTCGAGCGCCGCGCCTCG CTCCCGCCGCCCGCTTCGAGGGCTCCATCACAGCCACCATGAGCGAGACCTTTGACTGTG CAAAATGCAGCGAGTCCCTGTACGGGCGCAAATACATTCAGACGGACAACGGCCCCTACT GTGTGCCCTGCTATGACAACACCTTTGCCAACACGTGCGCTGAGTGCCAGCAGCTTATCG GGCATGACTCAAGGGAGCTGTTTTACGAGGATCGCCACTTCCACGAGGGCTGTTTCCGCT GCTGCCGCTGCCAGCGCTCCCTCGCCGACGAGCCCTTCACCTGCCAGGATAGCGAGCTGC TCTGTAACGACTGCTACTGCAGCGCCTTCTCCTCTCAGTGCTCCGCCTGCGGAGAGACCG TCATGCCTGGGTCCCGGAAGCTGGAGTACGGAGGCCAGACGTGGCATGAGCACTGCTTCC TGTGCAGCGGCTGTGAGCAGCCGCTGGGCTCCTGTTCCTTTGTGCCCGACAAGGGTGCTC ACTACTGCGTGCCCTGCTATGAGAACAAGTTCGCGCCTCGCTGCGCCCGCTGCAGCAAGA CGCTGACACAGGGTGGCGTGACGTACCGTGACCAACCCTGGCATCGAGAATGCCTGGTCT GCACAGGGTGCCAGACGCCCCTGGCAGGGCAGCAGTTCACCTCCCGGGACGATGATCCTT ATTGTGTGGCCTGTTTTGGAGAACTCTTTGCACCCAAGTGCAGCAGCTGCAAGCGCCCCA TCACAGGACTCGGCGGAGGCAAGTATGTGTCCTTTGAAGACCGCCACTGGCACCACAGCT GCTTCTCCTGTGCCCGCTGCTCCACCTCCCTGGTGGGTCAAGGCTTCGTGCCGGATGGAG ACCAAGTGCTGTGCCAGGGTTGCAGCCAGGCAGGGCCCTGAGCCAGGGCTCCTGGGCCCA GGCCCTCCCATACCAGGGCTCCAGGACTAAGGCTCCTCTTCCAGACCACCTCTGGGTCCC AGCCCCGCCCCAAATGGGGTTCCCCCTAGGCTCCAGGATTCAGCCTCCCCACTCCAACAT CCCCAATCTGGTACTCCAGGCTTAATGGAGCCTCCATCATTTAAATCCCCCCCAAACCAG GACCCCAGAACTCAGTCTATATGGGTGACTGAAAAGTCCTCAGAAGTGGACCCTCCCCAC CCTCATCCCACCTCTCTCCACAGGGATGGGGCTTTCTGGGCAACAGATGAGAGGTTCAGT GCTTAGGGGGGGTCCTAGGGTACAGTTTTGCCCAGCCCGTGTTGTCAAGTGTTTTCTCGT TTCAGTTCAGCTCTGTTTTGCCCAGAGATGGGCAGAGGGGTGGGATTGGCTCACCCCACC ATTCAGATTCTGCAATAAAGCAGTATGAAGAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGCAGCCGGCAGCCTAGCCGGTAGCTCGCTCGGCCCCGCTCGGCCTGGCCCGCAGGTAG GAGCCGCCGAGGGACGCGGCCCCGGCTGCCCGGCCCTCCCTGCTCGAGCGCCGCGCCTCG CTCCCGCCGCCCGCTTCGAGGGCTCCATCACAGCCACCATGAGCGAGACCTTTGACTGTG CAAAATGCAGCGAGTCCCTGTACGGGCGCAAATACATTCAGACGGACAACGGCCCCTACT GTGTGCCCTGCTATGACAACACCTTTGCCAACACGTGCGCTGAGTGCCAGCAGCTTATCG GGCATGACTCAAGGGAGCTGTTTTACGAGGATCGCCACTTCCACGAGGGCTGTTTCCGCT GCTGCCGCTGCCAGCGCTCCCTCGCCGACGAGCCCTTCACCTGCCAGGATAGCGAGCTGC TCTGTAACGACTGCTACTGCAGCGCCTTCTCCTCTCAGTGCTCCGCCTGCGGAGAGACCG TCATGCCTGGGTCCCGGAAGCTGGAGTACGGAGGCCAGACGTGGCATGAGCACTGCTTCC TGTGCAGCGGCTGTGAGCAGCCGCTGGGCTCCTGTTCCTTTGTGCCCGACAAGGGTGCTC ACTACTGCGTGCCCTGCTATGAGAACAAGTTCGCGCCTCGCTGCGCCCGCTGCAGCAAGA CGCTGACACAGGGTGGCGTGACGTACCGTGACCAACCCTGGCATCGAGAATGCCTGGTCT GCACAGGGTGCCAGACGCCCCTGGCAGGGCAGCAGTTCACCTCCCGGGACGATGATCCTT ATTGTGTGGCCTGTTTTGGAGAACTCTTTGCACCCAAGTGCAGCAGCTGCAAGCGCCCCA TCACAGGACTCGGCGGAGGCAAGTATGTGTCCTTTGAAGACCGCCACTGGCACCACAGCT GCTTCTCCTGTGCCCGCTGCTCCACCTCCCTGGTGGGTCAAGGCTTCGTGCCGGATGGAG ACCAAGTGCTGTGCCAGGGTTGCAGCCAGGCAGGGCCCTGAGCCAGGGCTCCTGGGCCCA GGCCCTCCCATACCAGGGCTCCAGGACTAAGGCTCCTCTTCCAGACCACCTCTGGGTCCC AGCCCCGCCCCAAATGGGGTTCCCCCTAGGCTCCAGGATTCAGCCTCCCCACTCCAACAT CCCCAATCTGGTACTCCAGGCTTAATGGAGCCTCCATCATTTAAATCCCCCCCAAACCAG GACCCCAGAACTCAGTCTATATGGGTGACTGAAAAGTCCTCAGAAGTGGACCCTCCCCAC CCTCATCCCACCTCTCTCCACAGGGATGGGGCTTTCTGGGCAACAGATGAGAGGTTCAGT GCTTAGGGGGGGTCCTAGGGTACAGTTTTGCCCAGCCCGTGTTGTCAAGTGTTTTCTCGT TTCAGTTCAGCTCTGTTTTGCCCAGAGATGGGCAGAGGGGTGGGATTGGCTCACCCCACC ATTCAGATTCTGCAATAAAGCAGTATGAAGAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 489-1473, + strand, RNAz p=0.995198 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 489-1473, + strand, RNAz p=0.995198 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 139-315, gnl|bosTau2|chr3 (74675744-74675920) | |
| 139-315, gnl|Hg17|chr1 (38134199-38134021) | |
| 139-315, gnl|Mm7|chr4 (124150258-124150437) | |
| 489-659, gnl|bosTau2|chr3 (74677004-74677174) | |
| 489-659, gnl|canFam2|chr15 (7594060-7593872) | |
| 489-659, gnl|danRer3|chrNA (200347275-200347087) | |
| 489-659, gnl|dasNov1|scaffold_106824 (4682-4494) | |
| 489-659, gnl|echTel1|scaffold_312489 (10264-10452) | |
| 489-659, gnl|fr1|chrUn (155990693-155990884) | |
| 489-659, gnl|galGal2|chr23 (3071438-3071258) | |
| 489-659, gnl|hg17|chr1 (38132727-38132915) | |
| 489-659, gnl|Hg17|chr1 (38132898-38132728) | |
| 489-659, gnl|loxAfr1|scaffold_90310 (8111-7923) | |
| 489-659, gnl|mm7|chr4 (124152073-124151885) | |
| 489-659, gnl|Mm7|chr4 (124151900-124152070) | |
| 489-659, gnl|monDom2|scaffold_43 (11510206-11510013) | |
| 489-659, gnl|oryCun1|scaffold_133692 (4325-4137) | |
| 489-659, gnl|panTro1|chr1 (38980453-38980641) | |
| 489-659, gnl|rheMac2|chr1 (40874337-40874525) | |
| 489-659, gnl|rn3|chr5 (144042525-144042337) | |
| 489-659, gnl|tetNig1|chrUn_random (131182799-131182634) | |
| 489-659, gnl|xenTro1|scaffold_970 (305006-304822) | |
| 844-1055, gnl|bosTau2|chr3 (74677597-74677809) | |
| 844-1055, gnl|Hg17|chr1 (38132327-38132086) | |
| 844-1055, gnl|Mm7|chr4 (124152460-124152702) | |
| 1222-1473, gnl|bosTau2|chr3 (74678083-74678337) | |
| 1222-1473, gnl|Hg17|chr1 (38131788-38131535) | |
| 1222-1473, gnl|Mm7|chr4 (124153010-124153257) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 139-315, gnl|bosTau2|chr3 (74675744-74675920) | |
| 139-315, gnl|Hg17|chr1 (38134199-38134021) | |
| 139-315, gnl|Mm7|chr4 (124150258-124150437) | |
| 489-659, gnl|bosTau2|chr3 (74677004-74677174) | |
| 489-659, gnl|canFam2|chr15 (7594060-7593872) | |
| 489-659, gnl|danRer3|chrNA (200347275-200347087) | |
| 489-659, gnl|dasNov1|scaffold_106824 (4682-4494) | |
| 489-659, gnl|echTel1|scaffold_312489 (10264-10452) | |
| 489-659, gnl|fr1|chrUn (155990693-155990884) | |
| 489-659, gnl|galGal2|chr23 (3071438-3071258) | |
| 489-659, gnl|hg17|chr1 (38132727-38132915) | |
| 489-659, gnl|Hg17|chr1 (38132898-38132728) | |
| 489-659, gnl|loxAfr1|scaffold_90310 (8111-7923) | |
| 489-659, gnl|mm7|chr4 (124152073-124151885) | |
| 489-659, gnl|Mm7|chr4 (124151900-124152070) | |
| 489-659, gnl|monDom2|scaffold_43 (11510206-11510013) | |
| 489-659, gnl|oryCun1|scaffold_133692 (4325-4137) | |
| 489-659, gnl|panTro1|chr1 (38980453-38980641) | |
| 489-659, gnl|rheMac2|chr1 (40874337-40874525) | |
| 489-659, gnl|rn3|chr5 (144042525-144042337) | |
| 489-659, gnl|tetNig1|chrUn_random (131182799-131182634) | |
| 489-659, gnl|xenTro1|scaffold_970 (305006-304822) | |
| 844-1055, gnl|bosTau2|chr3 (74677597-74677809) | |
| 844-1055, gnl|Hg17|chr1 (38132327-38132086) | |
| 844-1055, gnl|Mm7|chr4 (124152460-124152702) | |
| 1222-1473, gnl|bosTau2|chr3 (74678083-74678337) | |
| 1222-1473, gnl|Hg17|chr1 (38131788-38131535) | |
| 1222-1473, gnl|Mm7|chr4 (124153010-124153257) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| mas (1.89274) | |
| ton (0.877501) | |
| amn (0.835422) | |
| nep (0.551775) | |
| cga (0.279096) | |
| eru (0.240096) | |
| nms (0.213858) | |
| nlu (0.191681) | |
| pty (0.142714) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| jej (0.0989218) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (1.89274) | |
| ton (0.877501) | |
| amn (0.835422) | |
| nep (0.551775) | |
| cga (0.279096) | |
| eru (0.240096) | |
| nms (0.213858) | |
| nlu (0.191681) | |
| pty (0.142714) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| jej (0.0989218) |