Non-Coding RNA Search

Ss1.1-Lng1-LNG010072B11.5

Sequence:


               
               CTTTTGTGGAGCCCTACTTTGATGAGTATGAGATGAAAGACAGGCTAACCTACTTTGAGA
AGAACTTCAATCTGCGGAGGTTCATGTACACCACCCCCTTCACGCTGGAGGGGCGGCCTC
GGGGAGAGCTGCACGAGCAGTACCGGCGCAACACCGTCCTGACCACCATGCACGCCTTCC
CCTACATCAAGACCAGGATCAGTGTCATCCAGAAGGAGGAGTTTGTTTTGACACCAATCG
AAGTTGCCATTGAAGAAATGAAGAAGAAGACCCTGCAGTTAGCTGTCGCCATTAACCAGG
AGCCCCCTGATGCCAAGATGCTTCAGATGGTGCTGCAGGGCTCTGTCGGAGCTACTGTCA
ATCAAGGACCACTGGAAGTAGCCCAAGTATTTTTGGCCGAAATTCCAGCTGACCCAAAAC
TCTATCGACATCACAACAAGTTGAGATTATGCTTTAAGGAATTCATAATGCGATGCGGTG
AAGCCGTGGAGAAAAACAAGCGTCTCATCACGGCCGACCAAAAGGAGTATCAGCTGGAAC
TCAAAAAGAACTACCACAAGCTGAGAGAGAGCCTCCGGCCAATGATTGAACGGAAAATTC
CAGAACTCTACAAGCCGATATTCAGAGTCGAGAGTCAAAAGAGAGACTCCTTCCACAGAT
CCAGTTTCAGGAAATGTGAAACCCAGTTGTCCCAGGGCAGCTAAGAAAACCTATCTCCAC
CCATGAAGACTGGAGGCCCTGTGACCCTGGAGGAGAATCCGCTGGTACTTACAACAGAGG
ACGTTTGCCACGAAGGACAGACTACATGCTCCCTGACCAGATGGCACCCTGGAAGCTTTG
GGATCCAAGTGACCATGACAATGACACCCAAATGGGGTCTGTCTGACCAGATTTTAGCCA
TTCAGGGGGATGAAGGTGGCAGAGGATGGTTCATCAGTGGCACCTGTGTATTAAAGCATA
TTTTTTTTTCACATTATTGTACAAAACAAGGCATAAACAGCATTTTCTGCGGAGTGGTCA
TGCAGTGTCTAGCCAAGGGATGACTTCCTGTCACCTGTCTCTGAATCTAACCTATGTTTA
GATAGACCCCAGTTGCCCAAGGGAAAATGGAAAAAATTGTCCACCTACCTATTGAAAGTG
AATTTCACTCCTTCCTCTTTAGGGGAGAGGACAGTGAGCTTGCTGGCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTTGTGGAGCCCTACTTTGATGAGTATGAGATGAAAGACAGGCTAACCTACTTTGAGA
AGAACTTCAATCTGCGGAGGTTCATGTACACCACCCCCTTCACGCTGGAGGGGCGGCCTC
GGGGAGAGCTGCACGAGCAGTACCGGCGCAACACCGTCCTGACCACCATGCACGCCTTCC
CCTACATCAAGACCAGGATCAGTGTCATCCAGAAGGAGGAGTTTGTTTTGACACCAATCG
AAGTTGCCATTGAAGAAATGAAGAAGAAGACCCTGCAGTTAGCTGTCGCCATTAACCAGG
AGCCCCCTGATGCCAAGATGCTTCAGATGGTGCTGCAGGGCTCTGTCGGAGCTACTGTCA
ATCAAGGACCACTGGAAGTAGCCCAAGTATTTTTGGCCGAAATTCCAGCTGACCCAAAAC
TCTATCGACATCACAACAAGTTGAGATTATGCTTTAAGGAATTCATAATGCGATGCGGTG
AAGCCGTGGAGAAAAACAAGCGTCTCATCACGGCCGACCAAAAGGAGTATCAGCTGGAAC
TCAAAAAGAACTACCACAAGCTGAGAGAGAGCCTCCGGCCAATGATTGAACGGAAAATTC
CAGAACTCTACAAGCCGATATTCAGAGTCGAGAGTCAAAAGAGAGACTCCTTCCACAGAT
CCAGTTTCAGGAAATGTGAAACCCAGTTGTCCCAGGGCAGCTAAGAAAACCTATCTCCAC
CCATGAAGACTGGAGGCCCTGTGACCCTGGAGGAGAATCCGCTGGTACTTACAACAGAGG
ACGTTTGCCACGAAGGACAGACTACATGCTCCCTGACCAGATGGCACCCTGGAAGCTTTG
GGATCCAAGTGACCATGACAATGACACCCAAATGGGGTCTGTCTGACCAGATTTTAGCCA
TTCAGGGGGATGAAGGTGGCAGAGGATGGTTCATCAGTGGCACCTGTGTATTAAAGCATA
TTTTTTTTTCACATTATTGTACAAAACAAGGCATAAACAGCATTTTCTGCGGAGTGGTCA
TGCAGTGTCTAGCCAAGGGATGACTTCCTGTCACCTGTCTCTGAATCTAACCTATGTTTA
GATAGACCCCAGTTGCCCAAGGGAAAATGGAAAAAATTGTCCACCTACCTATTGAAAGTG
AATTTCACTCCTTCCTCTTTAGGGGAGAGGACAGTGAGCTTGCTGGCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|13093779|emb|CAC29497.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13093779|emb|CAC29497.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               642-760, - strand, RNAz p=0.994069

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               642-760, - strand, RNAz p=0.994069

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               220-364, gnl|bosTau2|chr8 (22009781-22009925)
               

               
               220-364, gnl|Hg17|chr9 (439782-439926)
               

               
               220-364, gnl|Mm7|chr19 (24892174-24892318)
               


               
               642-1186, gnl|bosTau2|chr8 (22021269-22021804)
               

               
               642-1186, gnl|Hg17|chr9 (454157-454676)
               

               
               642-1186, gnl|Mm7|chr19 (24900974-24901481)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               220-364, gnl|bosTau2|chr8 (22009781-22009925)
               

               
               220-364, gnl|Hg17|chr9 (439782-439926)
               

               
               220-364, gnl|Mm7|chr19 (24892174-24892318)
               


               
               642-1186, gnl|bosTau2|chr8 (22021269-22021804)
               

               
               642-1186, gnl|Hg17|chr9 (454157-454676)
               

               
               642-1186, gnl|Mm7|chr19 (24900974-24901481)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               fty (0.17584)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               clu (0.119646)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               clu (0.119646)

	220-364, gnl\|bosTau2\|chr8 (22009781-22009925)
	220-364, gnl\|Hg17\|chr9 (439782-439926)
	220-364, gnl\|Mm7\|chr19 (24892174-24892318)

	642-1186, gnl\|bosTau2\|chr8 (22021269-22021804)
	642-1186, gnl\|Hg17\|chr9 (454157-454676)
	642-1186, gnl\|Mm7\|chr19 (24900974-24901481)

	fty (0.17584)
	cje (0.165235)
	cki (0.165235)
	spl (0.143184)
	ste (0.135208)
	clu (0.119646)